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Iqbal, M and Balaram, P (1981) The 310 Helical Conformation of the Amino Terminal Decapeptide of Suzukacillin. 270 MHz 'H NMR Evidence for Eight Intramolecular Hydrogen Bonds. In: Journal Of The American Chemical Society, 103 (8). pp. 5548-5552.

Mandal, Amit Kumar and Bisht, Shveta and Bhat, Vijay S and Krishnaswamy, Patnam Rajagopalan and Balaram, Padmanabhan (2008) Electrospray mass spectrometric characterization of hemoglobin Q (Hb Q-India) and a double mutant hemoglobin S/D in clinical samples. In: Clinical Biochemistry, 41 (1-2). pp. 75-81.

Mohanty, Debasisa and Bansal, Manju (1994) Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Ppairing in $d(G_4T_nG_4)$. In: Biopolymers, 34 (9). pp. 1187-1211.

Nagaich, Akhilesh K. and Bhattacharyya, Dhanaqjay and Brahmachari, Samir K and Bansal, Manju (1994) CA\TG Sequence at the 5'end of Oligo(A)-tracts Strongly Modulates DNA Curvature. In: Journal of Biological Chemistry , 269 (10). 7824-7833. .

Paul, Ranajit and Balaram, P (1978) A fluorescent probe study of the solubilisation of cholesterol by biie salt-phospholipid micelles. In: Biochemical and Biophysical Research Communications, 81 (3). pp. 850-857.

Sathyapriya, R and Vijayabaskar, MS and Vishveshwara, Saraswathi (2008) Insights into Protein-DNA Interactions through Structure Network Analysis. In: PLoS Computational Biology, 4 (9). pp. 1-15.

Sekharudu, Y.Chandra and Rao, VSR (1985) Theoretical-Studies on the Modes of Binding of Some of the Beta-Glycosidically Linked Glucobioses to Concanavalin-A. In: International Journal of Biological Macromolecules, 7 (6). pp. 349-356.

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*, Madhusudan and Vijayan, M (1992) Additional binding sites in lysozyme. X-ray analysis of lysozyme complexes with bromophenol red and bromophenol blue. In: Protein Engineering, 5 (5). pp. 399-404.

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Abbott, KL and Chaudhury, CS and Chandran, A and Vishveshwara, S and Dvorak, Z and Jiskrova, E and Poulikova, K and Vyhlidalova, B and Mani, S and Pondugula, SR (2019) Belinostat, at its clinically relevant concentrations, inhibits rifampicin-induced CYP3A4 and MDR1 gene expressions. In: Molecular Pharmacology, 95 (3). pp. 324-334.

Abhilash, Joseph and Geethanandan, K and Bharath, SR and Sabu, A and Sadasivan, C and Haridas, M (2015) The crystal structure of a lectin from Butea monosperma: Insight into its glycosylation and binding of ligands. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 72 . pp. 1376-1383.

Abhilash, Joseph and Geethanandan, K and Bharath, SR and Sadasivan, C and Haridas, M (2011) Crystallization and preliminary X-ray diffraction analysis of a galactose-specific lectin from the seeds of Butea monosperma. In: Acta Crystallographica Section F, 67 (Part 4). pp. 524-526.

Abhilash, Joseph and Geethanandan, K and Bharath, SR and Sadasivan, C and Haridas, M (2011) Crystallization and preliminary X-ray diffraction analysis of a galactose-specific lectin from the seeds of Butea monosperma. In: Acta Crystallographica Section F, 67 (Part 4). pp. 524-526.

Abhinav, KV and Samuel, Ebenezer and Vijayan, M (2016) Archeal lectins: An identification through a genomic search. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (1). pp. 21-30.

Abhinav, KV and Sharma, Alok and Vijayan, M (2013) Identification of mycobacterial lectins from genomic data. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 81 (4). pp. 644-657.

Abhinav, KV and Sharma, Kaushal and Surolia, A and Vijayan, Mamannamana (2017) Distortion of the Ligand Molecule as a Strategy for Modulating Binding Affinity: Further Studies Involving Complexes of Jacalin with beta-Substituted Disaccharides. In: IUBMB LIFE, 69 (2). pp. 72-78.

Abhinav, KV and Sharma, Kaushal and Surolia, Avadhesha and Vijayan, Mamannamana (2016) Effect of Linkage on the Location of Reducing and Nonreducing Sugars Bound to Jacalin. In: IUBMB LIFE, 68 (12). pp. 971-979.

Abhinav, KV and Sharma, Kaushal and Swaminathan, CP and Surolia, A and Vijayan, M (2015) Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (2). pp. 324-331.

Abhinav, KV and Vijayan, Mamannamana (2014) Structural diversity and ligand specificity of lectins. The Bangalore effort. In: PURE AND APPLIED CHEMISTRY, 86 (9). pp. 1335-1355.

Abraham, Ambily and Natraj, Usha and Karande, Anjali A and Gulati, Ashutosh and Murthy, Mathur RN and Murugesan, Sathyabalan and Mukunda, Pavithra and Savithri, Handanahal S (2016) Intracellular delivery of antibodies by chimeric Sesbania mosaic virus (SeMV) virus like particles. In: SCIENTIFIC REPORTS, 6 .

Acharya, Narottam and Talawar, Ramappa K and Saikrishnan, K and Vijayan, M and Varshney, Umesh (2003) Substitutions at tyrosine 66 of Escherichia coli uracil DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition. In: Nucleic Acids Research, 31 (24). pp. 7216-7226.

Acharya, S and Patanjali, SR and Sajjan, SU and Gopalakrishnan, B and Surolia, A (1990) Thermodynamic analysis of ligand binding to winged bean (Psophocarpus tetragonolobus) acidic agglutinin reveals its specificity for terminally monofucosylated H-reactive sugars. In: Journal of Biological Chemistry, 265 (20). pp. 11586-11594.

Adhada, ST and Sarma, SP (2024) Slow Conformational Exchange between Partially Folded and Near-Native States of Ubiquitin: Evidence for a Multistate Folding Model. In: Biochemistry, 63 (20). pp. 2565-2579.

Adhikari, Pratima and Sikder, Bachhawat K and Thomas, Celestine J and Ravishankar, R and Jeyaprakash, Arockia A and Sharma, Vivek and Vijayan, Mamanamana and Surolia, Avadhesha (2001) Mutational Analysis at Asn-41 in Peanut Agglutinin - A Residue Critical For The Binding Of The Tumor-Associated Thomsen-Friedenreich Antigen. In: The Journal of Biological Chemistry, 276 (44). pp. 40724-40729.

Adkar, Bharat V and Tripathi, Arti and Sahoo, Anusmita and Bajaj, Kanika and Goswami, Devrishi and Chakrabarti, Purbani and Swarnkar, Mohit K and Gokhale, Rajesh S and Varadarajan, Raghavan (2012) Protein Model Discrimination Using Mutational Sensitivity Derived from Deep Sequencing. In: Structure, 20 (2). pp. 371-381.

Agarwal, Garima and Mahajan, Swapnil and Srinivasan, Narayanaswamy and De Brevern, Alexandre G (2011) Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks. In: PLos One, 6 (3).

Agarwal, Garima and Rajavel, Malligarjunan and Gopal, Balasubramanian and Srinivasan, Narayanaswamy (2009) Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold. In: PLoS ONE, 4 (5).

Agarwal, S and Sharma, A and Bouzeyen, R and Deep, A and Sharma, H and Mangalaparthi, KK and Datta, KK and Kidwai, S and Gowda, H and Gowda, H and Varadarajan, R and Sharma, RD and Thakur, KG and Singh, R (2020) VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response. In: Science Advances, 6 (23).

Agarwalla, S and Gokhale, RS and Santi, DV and Balaram, P (1996) Covalent tethering of the dimer interface annuls aggregation in thymidylate synthase. In: Protein Science, 5 (2). pp. 270-277.

Agarwalla, S and Mellor, IR and Sansom, MSP and Karle, IL and Flippen-Anderson, JL and Uma, K and Krishna, K and Sukumar, M and Balaram, P (1992) Zervamicins, a structurally characterised peptide model for membrane ion channels. In: Biochemical and Biophysical Research Communications, 186 (1). pp. 8-15.

Agarwalla, Sanjay and Gokhale, Rajesh S and Santi, Daniel V and Balaram, P (1996) Covalent tethering of the dimer interface annuls aggregation in thymidylate synthase. In: Protein Science, 5 (2). pp. 270-277.

Aggarwal, P and Dasgupta, M and Joseph, AP and Chatterjee, N and Srinivasan, N and Nath, U (2010) Identification of Specific DNA Binding Residues in the TCP Family of Transcription Factors in Arabidopsis. In: Plant Cell Online, The, 22 (4). pp. 1174-1189.

Aggarwal, Vasudha and Kulothungan, Rajendra S and Balamurali, MM and Saranya, SR and Varadarajan, Raghavan and Ainavarapu, Sri Rama Koti (2011) Ligand-modulated Parallel Mechanical Unfolding Pathways of Maltose-binding Proteins. In: Journal of Biological Chemistry, 286 (32). pp. 28056-28065.

Aghera, NK and Prabha, J and Tandon, H and Chattopadhyay, G and Vishwanath, S and Srinivasan, N and Varadarajan, R (2020) Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase. In: Structure, 28 (5). 562-572.e4.

Aghera, Nilesh and Udgaonkar, Jayant B (2017) Stepwise Assembly of beta-Sheet Structure during the Folding of an SH3 Domain Revealed by a Pulsed Hydrogen Exchange Mass Spectrometry Study. In: BIOCHEMISTRY, 56 (29). pp. 3754-3769.

Ahmed, S and Bhasin, M and Manjunath, K and Varadarajan, R (2022) Prediction of Residue-specific Contributions to Binding and Thermal Stability Using Yeast Surface Display. In: Frontiers in Molecular Biosciences, 8 .

Ahmed, S and Chattopadhyay, G and Manjunath, K and Bhasin, M and Singh, N and Rasool, M and Das, S and Rana, V and Khan, N and Mitra, D and Asok, A and Singh, R and Varadarajan, R (2022) Combining cysteine scanning with chemical labeling to map protein-protein interactions and infer bound structure in an intrinsically disordered region. In: Frontiers in Molecular Biosciences, 9 .

Ahmed, S and Khan, MS and Gayathri, S and Singh, R and Kumar, S and Patel, UR and Malladi, SK and Rajmani, RS and van Vuren, PJ and Riddell, S and Goldie, S and Girish, N and Reddy, P and Upadhyaya, A and Pandey, S and Siddiqui, S and Tyagi, A and Jha, S and Pandey, R and Khatun, O and Narayan, R and Tripathi, S and McAuley, AJ and Singanallur, NB and Vasan, SS and Ringe, RP and Varadarajan, R (2021) A Stabilized, Monomeric, Receptor Binding Domain Elicits High-Titer Neutralizing Antibodies Against All SARS-CoV-2 Variants of Concern. In: Frontiers in Immunology, 12 .

Ahmed, S and Manjunath, K and Chattopadhyay, G and Varadarajan, R (2022) Identification of stabilizing point mutations through mutagenesis of destabilized protein libraries. In: Journal of Biological Chemistry, 298 (4).

Ahsan, N and Shariq, M and Surolia, A and Raj, R and Khan, MF and Kumar, P (2024) Multipronged regulation of autophagy and apoptosis: emerging role of TRIM proteins. In: Cellular and Molecular Biology Letters, 29 (1).

Ahsan, Nuzhat and Mishra, Satyendra and Jain, Manish Kumar and Surolia, Avadhesha and Gupta, Sarika (2015) Curcumin Pyrazole and its derivative (N-(3-Nitrophenylpyrazole) Curcumin inhibit aggregation, disrupt fibrils and modulate toxicity of Wild type and Mutant alpha-Synuclein. In: SCIENTIFIC REPORTS, 5 .

Ahsan, Nuzhat and Siddique, Ibrar Ahmed and Gupta, Sarika and Surolia, Avadhesha (2018) A routinely used protein staining dye acts as an inhibitor of wild type and mutant alpha-synuclein aggregation and modulator of neurotoxicity. In: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 143 . pp. 1174-1184.

Ahuja, Lalima Gagan and Gopal, Balasubramanian (2014) Bi-Domain Protein Tyrosine Phosphatases Reveal an Evolutionary Adaptation to Optimize Signal Transduction. In: ANTIOXIDANTS & REDOX SIGNALING, 20 (14). pp. 2141-2159.

Ajay Kumar, R and Vaze, Moreshwar B and Chandra, Nagasum and Vijayan, M and Muniyappa, K (1996) Functional characterization of the precursor and spliced forms of RecA protein of Mycobacterium tuberculosis. In: Biochemistry, 35 (6). 1793 -1802.

Akhade, Vijay Suresh and Arun, Gayatri and Donakonda, Sainitin and Rao, Manchanahalli R. Satyanarayana (2014) Genome wide chromatin occupancy of mrhl RNA and its role in gene regulation in mouse spermatogonial cells. In: RNA BIOLOGY, 11 (10). pp. 1262-1279.

Akkaya, Munir and Rawat, Mukul and Akkaya, Billur and Chaturvedi, Akanksha and Pena, Mirna and Miozzo, Pietro and Kim, Ann S and Pierce, Susan K (2016) B cells have bifurcated Toll-like receptor signaling allowing both inflammatory cytokine and type 1 interferon responses. In: JOURNAL OF IMMUNOLOGY, 196 (1).

Alam, MK and Bhuvaneshwari, RA and Sengupta, I (2024) 19F NMR relaxation of buried tryptophan side chains suggest anisotropic rotational diffusion of the protein RfaH. In: Journal of Biomolecular NMR .

Ali, Asfa and Bansal, Manju and Bhattacharya, Santanu (2015) Ligand 5,10,15,20-Tetra(N-methyl-4-pyridyl)porphine (TMPyP4) Prefers the Parallel Propeller-Type Human Telomeric G-Quadruplex DNA over Its Other Polymorphs. In: JOURNAL OF PHYSICAL CHEMISTRY B, 119 (1). pp. 5-14.

Ali, Rustam and Kumar, Sanjeev and Balaram, Hemalatha and Sarma, Siddhartha P (2012) H-1, C-13, N-15 assignment and secondary structure determination of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii. In: BIOMOLECULAR NMR ASSIGNMENTS, 6 (2). pp. 193-196.

Ali, Rustam and Kumar, Sanjeev and Balaram, Hemalatha and Sarma, Siddhartha P (2013) Solution nuclear magnetic resonance structure of the GATase subunit and structural Basis of the interaction between GATase and ATPPase subunits in a two-subunit-type GMPS from methanocaldococcus jannaschii. In: Biochemistry, 52 (25). pp. 4308-4323.

Alok, Sharma and Chandran, Divya and Singh, Desh D and Vijayan, M (2007) Multiplicity of carbohydrate-binding sites in \beta-prism fold lectins: occurrence and possible evolutionary implications. In: Journal of Biosciences, 32 (6). pp. 1089-1110.

Alurappa, Ramesha and Bojegowda, Madhusudhan Reddy Muthukurpalya and Kumar, Vijith and Mallesh, Naveen Kumar and Chowdappa, Srinivas (2014) Characterisation and bioactivity of oosporein produced by endophytic fungus Cochliobolus kusanoi isolated from Nerium oleander L. In: NATURAL PRODUCT RESEARCH, 28 (23). pp. 2217-2220.

Amarnath, S and Kawli, Trupti and Mohanty, Smita and Srinivasan, Narayanaswamy and Nanjundiah, Vidyanand (2012) Pleiotropic Roles of a Ribosomal Protein in Dictyostelium discoideum. In: PLOS ONE, 7 (2).

Amarnath Reddy, KK and Moi, S and Dolle, A and Hosamani, B and Krishnamurthy, K and Prakash, S and Raghothama, S and Gowd, KH (2020) Synthesis of Peptide Cysteine Dimedone Using Fmoc-Cys(Dmd)-OH: Glutathione Cysteine Dimedone as a Probe in Investigating the Sulfenic Acid Mediated Oxidation of Glutathione. In: Helvetica Chimica Acta, 103 (7).

Amaro, Rommie E and Bansal, Manju (2014) Theory and simulation: Tools for solving the insolvable. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 25 . IV-V.

Anachi, RB and Bansal, Manju and Easwaran, KRK and Namboodri, K and Gaber, BP (1995) Molecular Modeling Studies on Amphotericin B and its Complex with Phospholipid,. In: Journal of Biomolecular Structure & Dynamics, 12 (5). pp. 957-970.

Anachi, RB and Easwaran, KRK and Gaber, BP (1996) Structure and molecular basis of filipin sterol interaction. In: Biophysical Journal, 70 (2). TU192-TU192 .

Anamika, K and Srinivasan, N (2007) Comparative Kinomics of Plasmodium Organisms: Unity in Diversity. In: Protein and Peptide Letters, 14 (6). pp. 509-517.

Anamika, * and Srinivasan, N and Krupa, A (2005) A Genomic Perspective of Protein Kinases in Plasmodium falciparum. In: Proteins, 58 (1). pp. 180-189.

Anamika, K and Abhinandan, KR and Deshmukh, K and Srinivasan, N (2009) Classification of Nonenzymatic Homologues of Protein Kinases. In: Comparative and Functional Genomics, 2009 . pp. 1-7.

Anamika, K and Bhattacharya, A and Srinivasan, N (2008) Analysis of the protein kinome of Entamoeba histalytica. In: Proteins: Structure, Function, and Bioinformatics, 71 (2). pp. 995-1006.

Anamika, Krishanpal and Garnier, Nicolas and Srinivasan, Narayanaswamy (2009) Functional diversity of human protein kinase splice variants marks significant expansion of human kinome. In: BMC Genomics, 10 .

Anamika, Krishanpal and Martin, Juliette and Srinivasan, Narayanaswamy (2008) Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations. In: BMC Genomics, 9 . 625-1-625-16.

Anand, B and Gowri, VS and Srinivasan, N (2005) Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. In: Bioinformatics, 21 (12). pp. 2821-2826.

Anand, B and Namboori, S and Sandhya, S and Srinivasan, N (2004) Influence of protein structural similarities in adding value to genome data. In: Indian Journal of Biotechnology, 3 (4). pp. 473-485.

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe�4S cluster and regulates Fe�S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe–4S cluster and regulates Fe–S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, Prem T and Bhat, Abdul Wajid and Shouche, Yogesh S and Roy, Upal and Siddharth, Jay and Sarma, Siddhartha P (2006) Antimicrobial activity of marine bacteria associated with sponges from the waters off the coast of South East India. In: Microbiological Research, 161 (3). pp. 252-262.

Anand, TP (2005) Shed cloak of prejudice vis-a-vis women. In: Current Science (Bangalore), 89 (1). p. 8.

Ananda, K and Aravinda, S and Vasudev, Prema G and Raja, Muruga Poopathi K and Sivaramakrishnan, H and Nagarajan, K and Shamala, N and Balaram, P (2003) Stereochemistry of gabapentin and several derivatives: Solid state conformations and solution equilibria. In: Current Science, 85 (7). pp. 1002-1011.

Ananda, Kuppanna and Vasudev, Prema G and Sengupta, Anindita and Poopathi Raja, K Muruga and Shamala, Narayanaswamy and Balaram, Padmanabhan (2005) Polypeptide Helices in Hybrid Peptide Sequences. In: Journal of the American Chemical Society, 127 (47). pp. 16668-16674.

Ananthan, VS (1973) Thermal Denaturation Of Beta-Lactoglobulin-Alpha In Water. In: Current Science (Bangalore), 42 (24). pp. 845-846.

Ananthanarayanan, VS and Bandeker, J (1975) Prediction of beta-regions in globular proteins. In: Current Science, 44 (17). pp. 609-611.

Ananthanarayanan, VS and Hew, CL (1977) Synthetic polypeptide with antifreeze activity. In: Nature, 268 (5620). 560 -561.

Ananthanarayanan, SV and Soman, KV and Ramakrishnan, C (1987) A novel supersecondary structure in globular proteins comprising the collagen-like helix and ?-turn. In: Journal of Molecular Biology, 198 (4). pp. 705-709.

Ananthanarayanan, VS and Ahmad, F and Bigelow, CC (1977) The denaturation of β-lactoglobulin-A at pH 2. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 492 (1). pp. 194-203.

Ananthanarayanan, VS and Brahmachari, SK and Vijayan, M (1980) Beta-Turn Conformation of N-Acetyl-Pro-Gly-Phe-Oh in crystal and its relevance to collagen. In: Federation Proceedings, 39 (6). p. 1788.

Ananthanarayanan, VS and Brahmachari, Samir K and Pattabiramanc, N (1984) Proline-containing β-turns in peptides and proteins: Analysis of structural data on globular proteins. In: Archives of Biochemistry and Biophysics, 232, I (2). pp. 482-495.

Ananthanarayanan, VS and Brahmachari, Samir K and Rao, Rapaka S and Bhatnagar, Rajendra S (1976) Polypeptide Models of Collagen. Solution Properties of $(Gly-Pro-Sar)_n$, and $(Gly-Sar-Pro)_n$,. In: Biopolymers, 15 (4). pp. 707-716.

Ananthanarayanan, VS and Eswaran, KRK (1974) NMR Studies on Poly(S-Benzyl-L-Cysteine) in solution. In: Current Science, 43 (8). pp. 241-242.

Anantharam, Vellareddy and Patanjali, Sankhavaram R and Surolia, Avadesha (1985) A chitotetrose specific lectin from Luffa acutangula :Physico-chemical properties and the assignment of orientation of sugars in the lectin binding site. In: Journal of Biosciences, 8 (1-2). pp. 403-411.

Anbazhagan, Padmanabhan and Harijan, Rajesh K and Kiema, Tiila R and Janardan, Neelanjana and Murthy, MRN and Michels, Paul AM and Juffer, Andre H and Wierenga, Rik K (2014) Phylogenetic relationships and classification of thiolases and thiolase-like proteins of Mycobacterium tuberculosis and Mycobacterium smegmatis. In: TUBERCULOSIS, 94 (4). pp. 405-412.

Anirudhan, Arun and Narayanan, Rishikesh (2015) Analogous Synaptic Plasticity Profiles Emerge from Disparate Channel Combinations. In: JOURNAL OF NEUROSCIENCE, 35 (11). pp. 4691-4705.

Ankolekar, Shreya M and Sikdar, Sujit K (2015) Early postnatal exposure to lithium in vitro induces changes in AMPAR mEPSCs and vesicular recycling at hippocampal glutamatergic synapses. In: JOURNAL OF BIOSCIENCES, 40 (2). pp. 339-354.

Antony, Hiasindh Ashmi and Topno, Nishith Saurav and Gummadi, Sathyanarayana N and Sankar, Devanarayanan Siva and Krishna, Ramadas and Parija, Subhash Chandra (2019) In silico modeling of Plasmodium falciparum chloroquine resistance transporter protein and biochemical studies suggest its key contribution to chloroquine resistance. In: ACTA TROPICA, 189 . pp. 84-93.

Aparna, K and Balaram, P and Krishnamurthy, SS and Nethaji, M (1994) Peptide-lanthanide interactions. Crystal structure of a europium(III)-triglycine complex. In: International Journal of Peptide & Protein Research, 43 (1). pp. 19-22.

Aparna, K and Krishnamurthy, SS and Nethaji, M and Balaram, P (1994) Amino acid-lanthanide interactions. Crystal structures of lanthanide complexes of Alpha-amino isobutyric acid (Aib), [La2(Aib)4(H2O)8](ClO4)6 and [Pr2(Aib)4(H2O)8]Cl6·H2O. In: Polyhedron, 13 (21). pp. 2993-2997.

Aparna, K and Krishnamurthy, SS and Nethaji, M and Balaram, Padmanabhan (1997) Amino acid-lanthanide interactions, Part 2. The X-ray crystal structures of lanthanide and calcium complexes of 1-amino-cyclohexane-1-carboxylic acid (Acc6). In: Polyhedron, 16 (3). pp. 507-514.

Appadurai, R and Koneru, JK and Bonomi, M and Robustelli, P and Srivastava, A (2023) Clustering Heterogeneous Conformational Ensembles of Intrinsically Disordered Proteins with t-Distributed Stochastic Neighbor Embedding. In: Journal of Chemical Theory and Computation .

Appadurai, R and Nagesh, J and Srivastava, A (2021) High resolution ensemble description of metamorphic and intrinsically disordered proteins using an efficient hybrid parallel tempering scheme. In: Nature Communications, 12 (1).

Appadurai, Rajeswari and Uversky, Vladimir N and Srivastava, Anand (2019) The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins. In: JOURNAL OF MEMBRANE BIOLOGY, 252 (4-5, S). pp. 273-292.

Appukuttan, PS and Surolia, A and Bachawat, BK (1977) Isolation of two galactose-binding proteins from Ricinus communis by affinity chromatography. In: Indian J Biochem Biophys, 14 (4). pp. 382-384.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Aib Residues in Peptaibiotics and Synthetic Sequences: Analysis of Nonhelical Conformations. In: Chemistry & Biodiversity, 5 (7). pp. 1238-1262.

Aravinda, S and Shamala, N and Das, Chittaranjan and Balaram, P (2002) Structural Analysis of Peptide Helices Containing Centrally Positioned Lactic Acid Residues. In: Biopolymers, 64 (5). pp. 255-267.

Aravinda, S and Shamala, N and Pramanik, Animesh and Das, Chittaranjan and Balaram, P (2000) An Unusual C–H . . . O Hydrogen Bond Mediated Reversal of Polypeptide Chain Direction in a Synthetic Peptide Helix. In: Biochemical and Biophysical Research Communications, 273 (3). pp. 933-936.

Aravinda, S and Shamala, N and Pramanik, Animesh and Das, Chittaranjan and Balaram, P (2000) An unusual C-H center dot center dot center dot O hydrogen bond mediated reversal of polypeptide chain direction in a synthetic peptide helix. In: Biochemical and Biophysical Research Communications, 273 (3). pp. 933-936.

Aravinda, S and Shamala, N and Roy, Rituparna S and Balaram, P (2003) Non-protein amino acids in peptide design. In: Journal of Chemical Sciences, 115 (5 & 6). pp. 373-400.

Aravinda, Subrayashastry and Ananda, Kuppanna and Shamala, Narayanaswamy and Balaram, Padmanabhan (2003) \alpha-\gamma Hybrid Peptides that Contain the Conformationally Constrained Gabapentin Residue: Characterization of Mimetics of Chain Reversals. In: Chemistry - A European Journal, 9 (19). pp. 4789-4795.

Aravinda, Subrayashastry and Datta, Saumen and Shamala, Narayanaswamy and Balaram, Padmanabhan (2004) Hydrogen-Bond Lengths in Polypeptide Helices: No Evidence for Short Hydrogen Bonds. In: Angewandte Chemie International Edition, 43 (48). pp. 6728-6731.

Aravinda, Subrayashastry and Harini, Veldore Vidya and Shamala, Narayanaswamy and Das, Chittaranjan and Balaram, Padmanabhan (2004) Structure and Assembly of Designed ‚beta-Hairpin Peptides in Crystals as Models for beta-Sheet Aggregation. In: Biochemistry, 43 (7). pp. 1832-1846.

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Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2014) INDUCTION OF FOLDED STRUCTURES IN DESIGNED PEPTIDES USING CONFORMATIONALLY CONSTRAINED RESIDUES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 264-281.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Bandyopadhyay, Abhishek and Balaram, Padmanabhan (2003) Probing the Role of the C-H···O Hydrogen Bond Stabilized Polypeptide Chain Reversal at the C-terminus of Designed Peptide Helices. Structural Characterization of Three Decapeptides. In: Journal of the American Chemical Society, 125 (49). pp. 15065-15075.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Das, Chittaranjan and Sriranjini, Arumugam and Karle, Isabella L and Balaram, Padmanabhan (2003) Aromatic-Aromatic Interactions in Crystal Structures of Helical Peptide Scaffolds Containing Projecting Phenylalanine Residues. In: Journal of the American Chemical Society, 125 (18). pp. 5308-5315.

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Balaram, Hemalatha and Prasad, Venkataram BV and Balaram, P (1983) Multiple Conformational States of a Pro-Pro Peptide. Solid-State and Solution Conformations of Boc-Aib-Pro-Pro-NHMe. In: Journal of the American Chemical Society, 105 (12). pp. 4065-4071.

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Balaram, P (1993) The Design and Construction of Synthetic Protein Mimics. In: INTERNATIONAL SYMP ON ENZYMES IN ORGANIC SYNTHESIS, JAN 06-09, 1992 , NEW DELHI, INDIA.

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Banerjee, Mithu and Poddar, Asim and Mitra, Gopa and Surolia, Avadhesha and Owa, Takashi and Bhattacharyya, Bhabatarak (2005) Sulfonamide Drugs Binding to the Colchicine Site of Tubulin: Thermodynamic Analysis of the Drug-Tubulin Interactions by Isothermal Titration Calorimetry. In: Journal Of Medicinal Chemistry, 48 (2). pp. 547-555.

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Banerjee, Mousumi and Balaram, Hemalatha and Joshi, NV and Balaram, P (2011) Engineered dimer interface mutants of triosephosphate isomerase: the role of inter-subunit interactions in enzyme function and stability. In: Protein Engineering Design and Selection, 24 (5). pp. 463-472.

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Bardi, R and Piazzes, AM and Toniolo, C and Raj, Antony P and Raghothama, S and Balaram, P (1986) Conformations of the amino aterminal tetrapeptide of emerimicins and antiamoebins in solution and in the solid state. In: International Journal of Biological Macromolecules, 8 (4). pp. 201-206.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Balaram, P and Sukumar, M (1992) Crystal structure of (S)-pipecolic acid (2R,3R)-tartrate, C10H17NO8. In: Zeitschrift für Kristallographie, 202 (1-2). pp. 174-176.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sudhanand, * and Balaji Rao, Rao R and Balaram, Padmanabhan (1992) Crystal structure of tert-butyloxycarbonyl-a-aminoisobutyryl-C-a,a-di-n-butylglycyl-methyl ester, C20H38N2O5. In: Zeitschrift für Kristallographie, 202 (3-4). pp. 302-305.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sukumar, M and Balaram, P (1992) Structure of N-tert-Butyloxycarbonyl-alpha-aminoisobutyryl-DL-pipecolyl-alpha-aminoisobutyric Acid Methyl Ester. In: Acta Crystallographica Section C: Crystal Structure Communications, 48 (9). pp. 1645-1648.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sukumar, M and Balaram, P (1992) Structure of N-tert-butyloxycarbonyl-[alpha]-aminoisobutyryl-DL-pipecolyl-[alpha]-aminoisobutyric acid methyl ester. In: Acta Crystallographica Section C, 48 . pp. 1645-1648.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sukumar, M and Balaram, P (1992) Structure of N-tert-butyloxycarbonyl-[alpha]-aminoisobutyryl-DL-pipecolyl-[alpha]-aminoisobutyric acid methyl ester. In: Acta Crystallographica Section C, 48 . pp. 1645-1648.

Bardi, R and Piazzesi, AM and Toniolo, C and Antony Raj, P and Raghothama, Srinivasarao and Balaram, Padmanabhan (1986) Conformations of the amino terminal tetrapeptide of emerimicins and antiamoebin in solution and in the solid state. In: International Journal of Biological Macromolecules, 8 (4). pp. 201-206.

Bardi, R and Piazzesi, AM and Toniolo, C and Balaram, Padmanabhan and Sukumar, M (1986) Stereochemistry of peptides containing 1-aminocyclopentane carboxylic acid (Acc5). Solution and solid state conformations of Boc-Acc5-Acc5-NHMe. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sen, N and Balaram, H and Balaram, P (1988) Structures of Pivaloyl-L-prolyl-N-methyl-D- phenylalaninamide and Pivaloyl-L-prolyl-N-methyl-D-valinamide. In: Acta Crystallographica Section C: Crystal Structure Communications, 44 (11). pp. 1972-1976.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Balaram, P (1986) Stereochemistry of Peptides Containing 1-AminocyclopentanecarboxylicA cid ( Am5): Solution and Solid-state Conformations of Boc-Acc '-Acc'-NHMe. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Balaram, P (1986) Stereochemistry of Peptides Containing 1-Aminocyclopentanecarboxylic Acid $({Acc}^5)$ : Solution and Solid-state Conformations of $Boc-{Acc}^5-{Acc}^5-NHMe$. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Raj, PA and Balaram, P (1985) Conformations Of Peptides Containing 1-Aminocyclohexane-Carboxylic Acid (Acc6) - Crystal-Structures Of 2 Model Peptides. In: International Journal Of Peptide And Protein Research, 25 (6). pp. 628-639.

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Basuroy, Krishnayan and Dinesh, Bhimareddy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2013) Promotion of Folding in Hybrid Peptides through Unconstrained gamma Residues: Structural Characterization of Helices in (alpha gamma gamma)(n) and (alpha gamma alpha)(n) Sequences. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 52 (11). pp. 3136-3139.

Basuroy, Krishnayan and Dinesh, Bhimareddy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) Structural Characterization of Backbone-Expanded Helices in Hybrid Peptides: (alpha gamma)(n) and (alpha beta)(n) Sequences with Unconstrained beta and gamma Homologues of L-Val. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 51 (35). pp. 8736-8739.

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Basuroy, Krishnayan and Kantharaju, Kamanna and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2019) Pregabalin peptides: conformational comparison of gamma(3)- and gamma(4)-substituted gamma-amino acids in alpha gamma alpha alpha alpha pentapeptides. In: AMINO ACIDS, 51 (9). pp. 1297-1306.

Basuroy, Krishnayan and Karuppiah, Vasantham and Balaram, Padmanabhan (2014) C-11/C-9 Helices in Crystals of alpha beta Hybrid Peptides and Switching Structures between Helix Types by Variation in the alpha-Residue. In: ORGANIC LETTERS, 16 (17). pp. 4614-4617.

Basuroy, Krishnayan and Karuppiah, Vasantham and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) The Structural Characterization of Folded Peptides Containing the Conformationally Constrained beta-Amino Acid Residue beta(2,2)Ac(6)c. In: HELVETICA CHIMICA ACTA, 95 (12). pp. 2589-2603.

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D

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Das, Anindita and Chakrabarti, Abhijit and Das, Puspendu K (2017) Enzyme Adsorption on Nanoparticle Surface Probed by Highly Sensitive Second Harmonic Light Scattering. [Book Chapter]

Das, Anindita and Narayanan, Rishikesh (2015) Active dendrites mediate stratified gamma-range coincidence detection in hippocampal model neurons. In: JOURNAL OF PHYSIOLOGY-LONDON, 593 (16). pp. 3549-3576.

Das, Anindita and Narayanan, Rishikesh (2017) Theta-frequency selectivity in the somatic spike-triggered average of rat hippocampal pyramidal neurons is dependent on HCN channels. In: JOURNAL OF NEUROPHYSIOLOGY, 118 (4). pp. 2251-2266.

Das, Anindita and Narayanan, Rishikesh R (2014) Active Dendrites Regulate Spectral Selectivity in Location-Dependent Spike Initiation Dynamics of Hippocampal Model Neurons. In: JOURNAL OF NEUROSCIENCE, 34 (4). pp. 1195-1211.

Das, Anindita and Rathour, Rahul K and Narayanan, Rishikesh (2017) Strings on a Violin: Location Dependence of Frequency Tuning in Active Dendrites. In: FRONTIERS IN CELLULAR NEUROSCIENCE, 11 .

Das, Anindya and Sood, AK and Maiti, Prabal K and Das, Mili and Varadarajan, R and Rao, CNR (2008) Binding of nucleobases with single-walled carbon nanotubes: Theory and experiment. In: Chemical Physics Letters, 453 (4-6). pp. 266-273.

Das, C and Nayak, V and Balaram, P and Raghothama, S (2000) Synthetic protein design: construction of a four-stranded $\beta$-sheet structure and evaluation of its integrity in methanol-water systems. In: Journal of Peptide Research, 56 (5). pp. 307-317.

Das, Chittaranjan and Naganagowda, GA and Karle, Isabella L and Balaram, P (2001) Designed beta-Hairpin Peptides with Defined Tight Turn Stereochemistry. In: Biopolymers, 58 (3). pp. 335-346.

Das, Chittaranjan and Raghothama, S and Balaram, P (1998) A Designed Three Stranded beta-Sheet Peptide as a Multiple beta-Hairpin Model. In: Journal of the American Chemical Society, 120 (23). pp. 5812-5813.

Das, Chittaranjan and Raghothama, S and Balaram, P (1999) A four stranded beta-sheet structure in a designed, synthetic polypeptide. In: Chemical Communications (11). pp. 967-968.

Das, Chittaranjan and Shankaramma, Channaveerappa S and Balaram, Padmanabhan (2001) Molecular Carpentry: Piecing Together Helices and Hairpins in Designed Peptides. In: Chemistry - A European Journal, 7 (4). pp. 840-847.

Das, DR and Sarkar, M and Paul, A (2023) Tools and approaches for assessing stress-responsive secondary metabolites to design climate-smart crops. [Book Chapter]

Das, M and Sreedharan, S and Shee, S and Malhotra, N and Nandy, M and Banerjee, U and Kohli, S and Rajmani, RS and Chandra, N and Seshasayee, ASN and Laxman, S and Singh, A (2023) Cysteine desulfurase (IscS)�mediated fine-tuning of bioenergetics and SUF expression prevents Mycobacterium tuberculosis hypervirulence. In: Science Advances, 9 (50).

Das, MK and Basu, A and Balaram, P (1985) Effects of membrane channel-forming polypeptides on mitochondrial oxidative phosphorylation. A comparison of alamethicin, gramicidin A, melittin and tetraacetyl melittin. In: Biochemistry International, 11 (3). 357 -363.

Das, Manasmita and Bandyopadhyay, Debarati and Mishra, Debasish and Datir, Satyajit and Dhak, Prasanta and Jain, Sanyog and Maiti, Tapas Kumar and Basak, Amit and Pramanik, Panchanan (2011) ``Clickable'', Trifunctional Magnetite Nanoparticles and Their Chemoselective Biofunctionalization. In: Bioconjugate Chemistry, 22 (6). pp. 1181-1193.

Das, Manasmita and Bandyopadhyay, Debarati and Mishra, Debasish and Datir, Satyajit and Dhak, Prasanta and Jain, Sanyog and Maiti, Tapas Kumar and Basak, Amit and Pramanik, Panchanan (2015) ``Clickable'', Trifunctional Magnetite Nanoparticles and Their Chemoselective Biofunctionalization (vol 22, pg 1181, 2011). In: BIOCONJUGATE CHEMISTRY, 26 (9). p. 1981.

Das, Manasmita and Bandyopadhyay, Debarati and Singh, Raman Preet and Harde, Harshad and Kumar, Sunil and Jain, Sanyog (2012) Orthogonal biofunctionalization of magnetic nanoparticles via ``clickable'' poly(ethylene glycol) silanes: a ``universal ligand'' strategy to design stealth and target-specific nanocarriers. In: JOURNAL OF MATERIALS CHEMISTRY, 22 (47). pp. 24652-24667.

Das, Manoj K and Balaram, P (1984) Interactions of the channel forming peptide alamethicin with artificial and natural membranes. In: Journal of Biosciences, 6 (4). pp. 337-348.

Das, Manoj K and Vithayathil, Paul J and Balaram, P (1977) Stabilization of Enzyme Structures by Inhibitors: A Nuclear Magnetic Resonance Study of the Effect of Phosphate on the Acid Unfolding of Ribonuclease A. In: International Journal of Peptide and Protein Research, 10 . pp. 9-16.

Das, Mili and Kobayashi, Masanori and Yamada, Yusuke and Sreeramulu, Sridhar and Ramakrishnan, C and Wakatsuki, Soichi and Kato, Ryuichi and Varadarajan, Raghavan (2007) Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts. In: Journal of Molecular Biology, 372 (5). pp. 1278-1292.

Das, Mili and Rao, Bharathi Vasudeva and Ghosh, Sanjukta and Varadarajan, Raghavan (2005) Attempts to Delineate the Relative Contributions of Changes in Hydrophobicity and Packing to Changes in Stability of Ribonuclease S Mutants. In: Biochemistry, 44 (15). pp. 5923-5930.

Das, Mrinmoy and Bhosale, Manoj and Wadhwa, Nitin and Ahmed, Syed M and Bhaskarla, Chetana and Kumar, Anujith and Srinivasan, Narayanaswamy and Nandi, Dipankar (2016) Importance of Amino Acids, Gln-119 and Tyr-376, in the S1 Pocket of Escherichia coli Peptidase N in Determining Substrate Specificity. In: PROTEIN AND PEPTIDE LETTERS, 23 (6). pp. 548-561.

Das, R and Datta, R and Varadarajan, R (2020) Probing the Structure of the HIV-1 Envelope Trimer Using Aspartate Scanning Mutagenesis. In: Journal of Virology, 94 (21).

Das, S and Bansal, M (2019) Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters. In: PLoS ONE, 14 (3).

Das, S and Maras, J S and Hussain, S and Sudarshan, C and Shastry, S M and Sharma, S K and Balaram, P and Sarin, S K (2016) MOLECULAR ELLIPTICITY OF CIRCULATING ALBUMIN-BILIRUBIN COMPLEX IS A RELIABLE PROGNOSTIC MEASURE OF SEVERITY OF ACUTE ON CHRONIC LIVER FAILURE (ACLF). In: JOURNAL OF HEPATOLOGY, 64 (2). S242-S243.

Das, Satyabrata and Kumar, Parimal and Bhor, Vikrant and Surolia, A and Vijayan, M (2005) Expression, purification, crystallization and preliminary X-ray crystallographic analysis of pantothenate kinase from Mycobacterium tuberculosis. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (Part 1). pp. 65-67.

Das, Satyabrata and Kumar, Parimal and Bhor, Vikrant and Surolia, A and Vijayan, M (2006) Invariance and variability in bacterial PanK: a study based on the crystal structure of Mycobacterium tuberculosis PanK. In: Acta Crystallographica Section D-Biological Crystallography, 62 (6). pp. 628-638.

Das, Soma and Mullick, Ranajoy and Kumar, Anuj and Tandon, Himani and Bose, Mihika and Gouthamchandra, K and Chandra, Madhavi and Ravishankar, Bagepally and Khaja, M N and Srinivasan, Narayanaswamy and Das, Saumitra and Subbarao, Shaila Melkote and Karande, Anjali Anoop (2017) Identification of a novel epitope in the C terminus of hepatitis C virus-E2 protein that induces potent and cross-reactive neutralizing antibodies. In: JOURNAL OF GENERAL VIROLOGY, 98 (5). pp. 962-976.

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Dasgupta, Nandita and Ranjan, Shivendu and Patra, Dhabaleswar and Srivastava, Priyanka and Kumar, Ashutosh and Ramalingam, Chidambaram (2016) Bovine serum albumin interacts with silver nanoparticles with a ``side on'' or ``end on'' conformation. In: CHEMICO-BIOLOGICAL INTERACTIONS, 253 . pp. 100-111.

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Datta, Saumen and Rathore, RNS and Vijayalakshmi, S and Vasudev, Prema G and Rao, Balaji R and Balaram, P and Shamala, N (2004) Peptide helices with pendant cycloalkane rings. Characterization of conformations of 1-aminocyclooctane-1 carboxylic acid $(Ac_8c)$ residues in peptides. In: Journal of Peptide Science, 10 (3). pp. 160-172.

Datta, R and Chowdhury, RR and Manjunath, K and Hanna, LE and Varadarajan, R (2020) A facile method of mapping HIV-1 neutralizing epitopes using chemically masked cysteines and deep sequencing. In: Proceedings of the National Academy of Sciences of the United States of America, 117 (47). pp. 29584-29594.

Datta, S and Biswal, BK and Vijayan, M (2001) The effect of stabilizing additives on the structure and hydration of proteins: a study involving tetragonal lysozyme. In: Acta Crystallographica Section D, 57 . pp. 1614-1620.

Datta, S and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2003) Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition. In: Proteins: Structure, Function, and Genetics, 50 . pp. 474-485.

Datta, S and Krishna, R and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2003) Crystal Structures of Mycobacterium smegmatis RecA and Its Nucleotide Complexes. In: Journal of Bacteriology, 185 . pp. 4280-4284.

Datta, S and Prabu, MM and Vaze, MB and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2000) Crystal Structures of Mycobacterium tuberculosis RecA and its complex ADP-AIF-4: implications for decreased ATPase activity and molecular aggregation. In: Nucleic Acids Research, 28 (24). pp. 4964-4973.

Datta, Saumen and Kaul, Ramesh and Rao, Balaji R and Shamala, N and Balaram, P (1997) Stereochemistry of linking segments in the design of helix–helix motifs in peptides. Crystallographic comparison of a glycyl–dipropylglycyl–glycyl segment in a tripeptide and a 14-residue peptide. In: Journal of Chemical Society, Perkin Transactions 2 (9). pp. 1659-1664.

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Ghosh, Amit and Sakaguchi, Reiko and Liu, Cuiping and Vishveshwara, Saraswathi and Hou, Ya-Ming (2011) Allosteric Communication in Cysteinyl tRNA Synthetase A NETWORK OF DIRECT AND INDIRECT READOUT. In: Journal of Biological Chemistry, 286 (43). pp. 37721-37731.

Ghosh, Amit and Vishveshwara, Saraswathi (2006) Modelling and molecular dynamics simulationof tRNA bound methionine tRNA synthetase. In: InCoB 2006 International Conference on Bioinformatics-2006, Dec 2006, New Delhi.

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Ghosh, Amit and Vishveshwara, Saraswathi (2007) A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis. In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), 104 (40). pp. 15711-15716.

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Ghosh, Anirban and Bansal, Manju (1999) Three-centre C-H...O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures. In: Acta Crystallographica Section D-Biological Crystallography, 55 (12). pp. 2005-2012.

Ghosh, Aparajita and Banerjee, Tanushree and Bhandary, Suman and Surolia, Avadhesha (2014) Formulation of nanotized curcumin and demonstration of its antimalarial efficacy. In: INTERNATIONAL JOURNAL OF NANOMEDICINE, 9 . pp. 5373-5387.

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Ghosh, Arindam and Bansal, Manju (2001) Structural features of B-DNA dodecamer crystal structures: Influence of crystal packing versus base sequence. In: Satellite Symposium on Structural Biology and Molecular Recognition, SEP 27-29, 1999, Calcutta, India.

Ghosh, Debalina and Faure, Nicolas and Kundu, Sharmistha and Rondelez, Francis (2003) Hybridization and immobilization of long ds-DNAs on polystyrene microspheres. In: Langmuir, 19 (14). pp. 5830-5837.

Ghosh, Debalina and Ramakanth, Madhugiri and Bhaumik, Anusarka and Faure, Nicolas and Rondelez, Francis and Chatterji, Dipankar (2005) Transcription of T7 DNA immobilised on latex beads and Langmuir-Blodgett film. In: Journal of Biochemical and Biophysical Methods, 62 (1). pp. 51-62.

Ghosh, Dipan and Lahiri, Priyanka and Verma, Hitesh and Mukherjee, Somnath and Chatterjee, Jayanta (2016) Engineering beta-sheets employing N-methylated heterochiral amino acids. In: CHEMICAL SCIENCE, 7 (8). pp. 5212-5218.

Ghosh, Eshan and Dwivedi, Hemlata and Baidya, Mithu and Srivastava, Ashish and Kumari, Punita and Stepniewski, Tomek and Kim, Hee Ryung and Lee, Mi-Hye and van Gastel, Jaana and Chaturvedi, Madhu and Roy, Debarati and Pandey, Shubhi and Maharana, Jagannath and Guixa-Gonzalez, Ramon and Luttrell, Louis M and Chung, Ka Young and Dutta, Somnath and Selent, Jana and Shukla, Arun K (2019) Conformational Sensors and Domain Swapping Reveal Structural and Functional Differences between beta-Arrestin Isoforms. In: CELL REPORTS, 28 (13). 3287+.

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Ghosh, M and Singh, M (2020) Structure specific recognition of telomeric repeats containing RNA by the RGG-box of hnRNPA1. In: Nucleic acids research, 48 (8). pp. 4492-4506.

Ghosh, Meenakshi and Singh, Mahavir (2018) RGG-box in hnRNPA1 specifically recognizes the telomere G-quadruplex DNA and enhances the G-quadruplex unfolding ability of UP1 domain. In: NUCLEIC ACIDS RESEARCH, 46 (19). pp. 10246-10261.

Ghosh, P and Chatterjee, J (2020) CH-� interaction between cross-strand amino acid pairs stabilizes β-hairpins. In: Chemical Communications, 56 (92). pp. 14447-14450.

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Ghosh, Pallavi and Ishihama, Akira and Chatterji, Dipankar (2001) Escherichia coli RNA polymerase subunit \omega and its n- terminal domain bind full-length \beta to facilitate incorporation into the ${\alpha}_{\mathrm{2}}$\beta subassembly. In: European Journal of Biochemistry, 268 (17). pp. 4621-4627.

Ghosh, Pallavi and Ramakrishnan, Chandrashekharan and Chatterji, Dipankar (2003) Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with $\omega-\beta′$ interaction. In: Biophysical Chemistry, 103 (3). pp. 223-237.

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Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Influence of iron on iron dependent repressor (IdeR) activation and DNA binding. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). p. 8.

Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Investigating the Mechanism of Iron Dependent Repressor (IDER) Activation and DNA Binding. In: BIOPHYSICAL JOURNAL, 108 (2, 1). 377A.

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Ghosh, Soma and Vishveshwara, Saraswathi and Chandra, Nagasuma (2013) Inferring biochemical routes from biochemical networks. In: 4th Annual ORNL Biomedical Sciences and Engineering Conference on Collaborative Biomedical Innovations, MAY 21-23, 2013, Biomed Sci & Engn Ctr, Oak Ridge Natl Lab, Oak Ridge, TN.

Ghosh, Subho and Chatterji, Dipankar (2017) Two zinc finger proteins from Mycobacterium smegmatis: DNA binding and activation of transcription. In: GENES TO CELLS, 22 (8). pp. 699-714.

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Gimeno, Ana and Delgado, Sandra and Valverde, Pablo and Bertuzzi, Sara and Alvaro Berbis, Manuel and Echavarren, Javier and Lacetera, Alessandra and Martin-Santamaria, Sonsoles and Surolia, Avadhesha and Canada, Francisco Javier and Jimenez-Barbero, Jesus and Arda, Ana (2019) Minimizing the Entropy Penalty for Ligand Binding: Lessons from the Molecular Recognition of the Histo Blood-Group Antigens by Human Galectin-3. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 58 (22). pp. 7268-7272.

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Girish, TS and Gopal, B (2005) Crystallization and preliminary X-ray diffraction studies on the catalytic domain of the chick retinal neurite-inhibitory factor CRYP-2. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (4). pp. 381-383.

Girish, Tavarekere S and Gopal, Balasubramanian (2010) Crystal Structure of Staphylococcus aureus Metallopeptidase (Sapep) Reveals Large Domain Motions between the Manganese-bound and Apo-states. In: Journal of Biological Chemistry, 285 (38). pp. 29406-29415.

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Girish, Tavarekere S and Vivek, B and Colaco, Melwin and Misquith, Sandra and Gopal, B (2013) Structure of an amidohydrolase, SACOL0085, from methicillin-resistant Staphylococcus aureus COL. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (Part 2). pp. 103-108.

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Gnanadhas, Divya Prakash and Ben Thomas, Midhun and Elango, Monalisha and Raichur, Ashok M and Chakravortty, Dipshikha (2013) Chitosan-dextran sulphate nanocapsule drug delivery system as an effective therapeutic against intraphagosomal pathogen Salmonella. In: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 68 (11). pp. 2576-2586.

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Karle, Isabella L and Awasthi, Satish Kumar and Balaram, Padmanabhan (1996) A designed beta-hairpin peptide in crystals. In: Proceedings of the National Academy of Sciences of the United States of America, 93 (16). pp. 8189-8193.

Karle, Isabella L and Banerjee, Arindam and Balaram, Padmanabhan (1997) Design of two-helix motifs in peptides: crystal structure of a system of linked helices of opposite chirality and a model helix-linker peptide. In: Folding and Design, 2 (4). pp. 203-210.

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Karle, Isabella L and Flippen-Anderson, Judith and Uma, Kuchibhotla and Balaram, Padmanabhan (1988) Aqueous channels within apolar peptide aggregates: Solvated helix of the \alpha-aminoisobutyric acid (Aib)-containing peptide $Boc-{(Aib-Ala-Leu)}_3-Aib-OMe. {2H}_2O.{CH}_3OH$ in crystals. In: Proceedings of the National Academy of Sciences of the United States of America, 85 (2). pp. 299-303.

Karle, Isabella L and Flippen-Anderson, Judith L and Agarwalla, S and Balaram, P (1994) Conformation of the flexible bent helix of Leu1-zervamicin in crystal C and a possible gating action for ion passage. In: Biopolymers, 34 (6). pp. 721-735.

Karle, Isabella L and Flippen-Anderson, Judith L and Agarwalla, Sanjay and Balaram, Padmanabhan (1991) Crystal structure of [Leu1]zervamicin, a membran ion-channel peptide: Implications for gating mechanisms. In: Proceedings of the National Academy of Sciences of the United States of America, 88 (12). pp. 5307-5311.

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Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, M and Balaram, P (1992) Helix Packing of Leucine-Rich Peptides: A Parallel Leucine Ladder in the Structure of Boc- Aib-Leu- Aib- Aib-Leu-Leu-Leu- Aib-Leu- Aib-OMe. In: Proteins: Structure, Function, and Genetics, 12 (4). pp. 324-330.

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Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, Muppalla and Balaram, Padmanabhan (1992) Differences in hydration and association of helical Boc-Val-Ala-Leu-Aib-Val-Ala-Leu-(Val-Ala-Leu-Aib)2-OMe. xH2O in two crystalline polymorphs. In: Journal of Medical Chemistry, 35 (21). pp. 3885-3889.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, Hemalatha and Balaram, P (1990) Peptide Design: Influence of a Guest Aib-Pro Segment on the Stereochemistry of an Oligo-Val Sequence-Solution Conformations and Crystal Structure of Boc-(Val)2-Aib-Pro-(Val)3-OMe. In: Biopolymers, 29 (10-11). pp. 1433-1442.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Apolar Peptide Models for Conformational Heterogeneity, Hydration, and Packing of Polypeptide Helices: Crystal Structure of Hepta- and Octapeptides Containing \alpha-Aminoisobutyric Acid. In: Proteins: Structure, Function, and Genetics, 7 (1). pp. 62-73.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Helix Aggregation in Peptide Crystals: Occurrence of Either All Parallel or Antiparallel Packing Motifs for \alpha-Helices in Polymorphs of Boc-Aib-Ala-leu-Ala-leu-Aib-leu-Ala-leu-Aib-OMe. In: Biopolymers, 29 (14). pp. 1835-1845.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1989) Modular Design of Synthetic Protein Mimics. Characterization of the Helical Conformation of a 13-Residue Peptide in Crystals. In: Biochemistry, 28 (16). pp. 6696-6701.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Synthetic Peptide Helices in Crystals: Structure and Antiparallel and Skewed Packing Motifs for \alpha-Helices in Two Isomeric Decapeptides. In: Biopolymers, 30 (7-8). pp. 719-731.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1993) Unfolding of an alpha-Helix in Peptide Crystals by Solvation: Conformational Fragility in a Heptapeptide. In: Biopolymers, 33 (5). pp. 827-837.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, Kuchibhotla and Balaram, Hemalatha and Balaram, Padmanabhan (1989) \alpha -Helix and Mixed $3_{10}$/ \alpha -helix in Cocrystallized Conformers of Boc-Aib-Val-Aib-Aib-Val-Val-Val-Aib-Val-Aib-Ome. In: Proceedings of the National Academy of Sciences of the United States of America, 86 (3). pp. 765-769.

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Karle, Isabella L and Rao, Balaji R and Prasad, Sudhanand and Kaul, Ramesh and Balaram, P (1994) Nonstandard Amino Acids in Conformational Design of Peptides. Helical Structures in Crystals of 5-10 Residue Peptides Containing Dipropylglycine and Dibutylglycine. In: Journal of the American Chemical Society, 116 (23). pp. 10355-10361.

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Kishore, R and Balaram, P (1984) Synthesis and conformations of stereochemically restricted analogs of $Leu_5-enkephalinamide$: substitution of a -aminoisobutyric acid and 1-aminocyclopentane-1-carboxylic acid at positions 2 and 3. In: Indian Journal of Chemistry, Sect. B: Organic Chemistry including Medicinal Chemistry, 23 (12). pp. 1137-1144.

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Kishore, R and Balaram, Padmanabhan (1984) Synthesis and conformations of stereochemically restricted analogs of Leu5-enkephalinamide. Substitution of a-aminoisobutyric acid and 1-aminocyclopentane-1-carboxylic acid at positions 2 and 3. In: Indian Journal of Chemistry, 23B . pp. 1137-1144.

Kishore, R and Ishizaki, H and Tu, AT and Ravi , A and Balaram, Padmanabhan (1987) Cystine peptides. Disulfide conformations in fourteen membered loops investigated by Raman spectroscopy and circular dichroism. In: International Journal of Peptide and Protein Research, 30 (4). pp. 474-480.

Kishore, R and Kumar, A and Balaram, P (1985) Cystine Peptides. The Antiparallel \beta -Sheet Conformation of Two Synthetic Cyclic Bis( cystine peptides). In: Journal of the American Chemical Society, 107 (26). pp. 8019-23.

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Krishna, A and Mittal, D and Virupaksha, SG and Nair, AR and Narayanan, R and Thakur, CS (2021) Biomimetic FPGA-based spatial navigation model with grid cells and place cells. In: Neural Networks, 139 . pp. 45-63.

Krishna, K and Sukumar, M and Balaram, P (1990) Structural chemistry and membrane modifying activity of the fungal polypeptides zervamicins, antiamoebins and efrapeptins. In: Pure and Applied Chemistry, 62 (7). pp. 1417-1420.

Krishna, R and Manjunath, GP and Kumar, P and Surolia, A and Nagasuma, Chandra R and Muniyappa, K and Vijayan, M (2006) Crystallographic identification of an ordered C-terminal domain and a second nucleotide-binding site in RecA: new insights into allostery. In: Nucleic Acids Research, 34 (9). 2186-2195.

Krishna, R and Prabu, Rajan J and Manjunath, GP and Datta, S and Chandra, NR and Muniyappa, K and Vijayan, M (2007) Snapshots of RecA Protein Involving Movement of the C-domain and Different Conformations of the DNA-binding Loops: Crystallographic and Comparative Analysis of 11 Structures of Mycobacterium smegmatis RecA. In: Journal of Molecular Biology, 367 (4). pp. 1130-1144.

Krishna, Yedhu and Sheehe, Suzanne L and O'Byrne, Sean (2018) Detection of Spatial Variation in Hypersonic Nozzle Flow Using Diode Laser Spectroscopy. In: AIAA JOURNAL, 56 (7). pp. 2930-2935.

Krishna Murthy, HM and Vijayan, M (1981) Structural Studies of Analgesics and Their Interactions. VIII.* Rotational Isomerism and Disorder in the Crystal Structure of Meelofenamie Acid. In: Acta Crystallographica Section B-Structural Science, 37 (May). pp. 1102-1105.

Krishna Murthy, HM and Vijayan, M (1981) Structural studies of analgesics and their interactions. VII. Stereoisomerism and disorder in the structure of oxyphenbutazone monohydrate. In: Acta Crystallographica Section B-Structural Science, 37 (Jan). pp. 210-213.

Krishna Sastry, MV and Swamy, Musti Joginadha and Surolia, Avadhesha (1988) Analysis of dynamics and mechanism of ligand binding to Artocarpus integrifolia agglutinin. A 13C and 19F NMR study. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 263 (29). 14826 -14831.

Krishnadev, O and Brinda, KV and Vishveshwara, Saraswathi (2005) A Graph Spectral Analysis of the Structural Similarity Network of Protein Chains. In: Proteins: Structure, Function, and Bioinformatics, 61 . pp. 152-163.

Krishnadev, O and Rekha, N and Pandit, SB and Abhiman, Saraswathi and Mohanty, S and Swapna, LS and Gore, S and Srinivasan, N (2005) PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. In: Nucleic Acids Research, 33 (Web Se). W126-W129.

Krishnadev, O and Srinivasan, N (2011) Prediction of protein-protein interactions between human host and a pathogen and its application to three pathogenic bacteria. In: International Journal of Biological Macromolecules, 48 (4). pp. 613-619.

Krishnadev, Oruganty and Srinivasan, Narayanaswamy (2011) AlignHUSH: Alignment of HMMs using structure and hydrophobicity information. In: BMC Bioinformatics, 12 .

Krishnamurthy, EV and Sankar, PV and Krishnan, S (1974) ALWIN-Algorithmic Wiswesser Notation System for Organic Compounds. In: Journal of Chemical Documentation, 14 (3). pp. 130-141.

Krishnamurthy, Sudeesh and Ghosh, Subho and Chatterji, Dipankar and Ganapathy, Rajesh and Sood, AK (2016) A micrometre-sized heat engine operating between bacterial reservoirs. In: Nature Physics, 12 (12). 1134+.

Krishnamurthy , HM and Vijayan, M (1979) Structural studies of analgesics and their interactions .6. 3-[[3-(Trifluoromethyl)Phenyl]Amino]-3-Pyridine carboxylic acid (Niflumic acid). In: Acta Crystallographica Section B, 35 (JAN). pp. 262-263.

Krishnan, Beena and Kulothungan, Rajendra S and Patra, Ashish K and Udgaonkar, Jayant B and Varadarajan, Raghavan (2009) SecB-Mediated Protein Export Need Not Occur via Kinetic Partitioning. In: Journal of Molecular Biology, 385 (4). pp. 1243-1256.

Krishnan, KS and Balaram, P (1976) Cation Binding to Brain Plasma Membranes. An Evaluation of the Use of Anionic Fluorescent Probes. In: Archives of Biochemistry and Biophysics, 174 . pp. 420-430.

Krishnan, KS and Balaram, P (1976) Mammalian Brain Plasma Membranes: Isolation, Enzymatic, and Characterization. In: Experimental Cell Research, 101 . pp. 299-306.

Krishnan, KS and Balaram, P (1976) Mammalian brain plasma membranes: Isolation, enzymatic, and chemical characterization. In: Experimental Cell Research, 101 (2). pp. 299-306.

Krishnan, KS and Balaram, P (1977) Nuclear Magnetic Resonance Studies of the Enzymatic Hydrolysis of Acetylcholine: A Critical Comment. In: Molecular Pharmacology, 13 (4). pp. 621-624.

Krishnan, KS and Balaram, P (1976) A Nuclear Magnetic Resonance Study of The Interaction of Serotonin With Gangliosides. In: FEBS Letters, 63 (2). pp. 313-315.

Krishnan, KS and Balaram, P (1975) Perturbation of lipid structures by fluorescent probes. In: FEBS Letters, 60 (2). pp. 419-422.

Krishnan, Riki and Balaram, P (2007) Current Science: Some early history. In: Current Science, 92 (1). pp. 129-138.

Krishnan, S and Chatterji, D (2020) Pleiotropic Effects of Bacterial Small Alarmone Synthetases: Underscoring the Dual-Domain Small Alarmone Synthetases in Mycobacterium smegmatis. In: Frontiers in Microbiology, 11 .

Krishnan, Sushma and Petchiappan, Anushya and Singh, Albel and Bhatt, Apoorva and Chatterji, Dipankar (2016) R-loop induced stress response by second (p)ppGpp synthetase in Mycobacterium smegmatis: functional and domain interdependence. In: MOLECULAR MICROBIOLOGY, 102 (1). pp. 168-182.

Krupa, A and Abhinandan, KR and Srinivasan, N (2004) KinG: a database of protein kinases in genomes. In: Nucleic Acids Research, 32 . D153-D155.

Krupa, A and Anamika, * and Srinivasan, N (2006) Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa. In: Gene, 380 (1). pp. 1-13.

Krupa, A and Preethi, G and Srinivasan, N (2004) Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases. In: Journal of Molecular Biology, 339 (5). pp. 1025-1039.

Krupa, A and Preethl, G and Srinivasan, Naranaswamy (2004) Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases. In: Journal of Molecular Biology, 339, (5). pp. 1025-1039.

Krupa, A and Srinivasan, N (2005) Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes. In: Bmc Genomics, 6 (129).

Krupa, A and Srinivasan, N (2002) Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. In: Protein Science, 11 (6). pp. 1580-1584.

Krupa, A and Srinivasan, N (2002) The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations. In: Genome Biology, 3 (12). 0066.1.

Krupa, Ananth and Sandhya, Kumaraswamy and Srinivasan, Narayanaswamy and Jonnalagadda, Sobhanaditya (2003) A conserved domain in prokaryotic bifunctional FAD synthetases can potentially catalyze nucleotide transfer. In: Trends in Biochemical Sciences, 28 (1). pp. 9-12.

Kuang, Zhihe and Zhang, Min-Min and Gupta, Kallol and Gajewiak, Joanna and Gulyas, Jozsef and Balaram, Padmanabhan and Rivier, Jean E and Olivera, Baldomero M and Yoshikami, Doju and Bulaj, Grzegorz and Norton, Raymond S (2013) Mammalian neuronal sodium channel Blocker mu-conotoxin BuIIIB has a structured N-terminus that influences potency. In: ACS Chemical Biology, 8 (6). pp. 1344-1351.

Kulkarni, KA and Srivastava, A and Mitra, N and Sharon, N and Surolia, A and Vijayan, M and Suguna, K (2004) Effect of glycosylation on the structure of Erythrina corallodendron lectin. In: Proteins-Structure Function and Bioinformatics, 56 (4). pp. 821-827.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2007) Generation of blood group specificity: New insights from structural studies on the complexes of A- and B-reactive saccharides with basic winged bean agglutinin. In: Proteins: Structure, Function, and Bioinformatics, 68 (3). pp. 762-769.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2006) Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc. In: Acta Crystallographica Section-D: Biological Crystallography, 62 (11). pp. 1319-1324.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2008) Structure and sugar-specificity of basic winged-bean lectin: structures of new disaccharide complexes and a comparative study with other known disaccharide complexes of the lectin. In: Acta Crystallographica Section D: Biological Crystallography, 64 (7). pp. 730-737.

Kulkarni, Kiran A and Sinha, Sharmistha and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2005) Structural basis for the specificity of basic winged bean lectin for the Tn-antigen: A crystallographic, thermodynamic and modelling study. In: Febs Letters, 579 (30). pp. 6775-6780.

Kulothungan, Rajendra S and Das, Mili and Johnson, Madrid and Ganesh, Chandramowli and Varadarajan, Raghavan (2009) Effect of Crowding Agents, Signal Peptide, and Chaperone SecB on the Folding and Aggregation of E. coli Maltose Binding Protein. In: Langmuir, 25 (12). pp. 6637-6648.

Kumar, Anujith and Reddy, Surendranath and Srinivasan, N and Nandi, Dipankar (2009) Interaction Between Two Residues in the Inter-Domain Interface of Escherichia coli Peptidase N Modulates Catalytic Activity. In: Protein and Peptide Letters, 16 (4). pp. 415-422.

Kumar, Sanjay and Kumar, Gyanendra and Kapoor, Mili and Surolia, Avadhesha and Surolia, Namita (2006) Synthesis and Evaluation of Substituted Pyrazoles: Potential Antimalarials Targeting the Enoyl-Acp Reductase of Plasmodium Falciparum. In: Synthetic Communications, 36 (2). pp. 215-226.

Kumar, A and Chandu, Dilip and Nandi, D (2004) Substrate specificity and role of PepN, a metallo-aminoendopeptidase from Escherichia coli. In: Annual Meeting of the American-Society-for-Biochemistry-and-Molecular-Biology/8th Congress of the International-Union-for-Biochemistry-and-Molecular-Biology, JUN 12-16, 2004, Boston, MA.

Kumar, A and Madhurima, K and Naganathan, AN and Vallurupalli, P and Sekhar, A (2023) Probing excited state 1Hα chemical shifts in intrinsically disordered proteins with a triple resonance-based CEST experiment: Application to a disorder-to-order switch. In: Methods, 218 . pp. 198-209.

Kumar, A and Narayanan, V and Sekhar, A (2020) Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy. In: Biochemistry, 59 (1). pp. 57-73.

Kumar, A and Sengupta, N and Dutta, S (2021) Simplified approach for preparing graphene oxide tem grids for stained and vitrified biomolecules. In: Nanomaterials, 11 (3). pp. 1-22.

Kumar, Aditya and Bansal, Manju (2012) Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 423-431.

Kumar, Aditya and Bansal, Manju (2017) Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression. In: DNA RESEARCH, 24 (1). pp. 25-35.

Kumar, Aditya and Manivelan, Vasumathi and Bansal, Manju (2016) Structural features of DNA are conserved in the promoter region of orthologous genes across different strains of Helicobacter pylori. In: FEMS MICROBIOLOGY LETTERS, 363 (18).

Kumar, Ambrish and Arya, Richa and Makwana, Pinakin K and Dangi, Rohit Singh and Yadav, Usha and Surolia, Avadhesha and Kundu, Suman and Sundd, Monica (2015) The Structure of the Holo-Acyl Carrier Protein of Leishmania major Displays a Remarkably Different Phosphopantetheinyl Transferase Binding Interface. In: BIOCHEMISTRY, 54 (36). pp. 5632-5645.

Kumar, Anujith and Bhosale, Manoj and Reddy, Surendranath and Srinivasan, Narayanaswamy and Nandi, Dipankar (2009) Importance of non-conserved distal carboxyl terminal amino acids in two peptidases belonging to the M1 family: Thermoplasma acidophilum Tricorn interacting factor F2 and Escherichia coli Peptidase N. In: Biochimie, 91 (9). pp. 1145-1155.

Kumar, B S Gnanesh and Surolia, Avadhesha (2018) Identification of Banana Lectin Isoforms and Differential Acetylation Through Mass Spectrometry Approaches. In: PROTEIN JOURNAL, 37 (1). pp. 38-46.

Kumar, B S Gnanesh and Surolia, Avadhesha (2017) N-Glycosylation analysis of yeast Carboxypeptidase Y reveals the ultimate removal of phosphate from glycans at Asn(368). In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 98 . pp. 582-585.

Kumar, DJ and Govindaraju, M and Narayan, P and Ramasamy, P and Nagendra, HG and Jagannatha Rao, KS and Easwaran, KRK (2022) Interactions of amyloid precursor protein intracellular domain (AICD) with copper and DNA fragment reveal conformational changes that trigger AD. In: Current Topics in Peptide and Protein Research, 23 . pp. 37-46.

Kumar, G and Duggisetty, SC and Srivastava, A (2022) A Review of Mechanics-Based Mesoscopic Membrane Remodeling Methods: Capturing Both the Physics and the Chemical Diversity. In: Journal of Membrane Biology .

Kumar, G and Srinivasan, N and Sandhya, S (2020) Artificial protein sequences enable recognition of vicinal and distant protein functional relationships. In: Proteins: Structure, Function and Bioinformatics .

Kumar, G and Srivastava, A (2022) Membrane Remodeling Due to a Mixture of Multiple Types of Curvature Proteins. In: Journal of Chemical Theory and Computation .

Kumar, G Senthil and Sarma, Siddhartha P (2010) Cloning, overexpression, folding and purification of a biosynthetically derived three disulfide scorpion toxin (BTK-2) from Mesobuthus tamulus. In: Protein Expression and Purification, 70 (2). pp. 137-142.

Kumar, Ganesan Senthil and Ramasamy, Palanisamy and Sikdar, Sujit K and Sarma, Siddhartha P (2005) Overexpression, purification, and pharmacological activity of a biosynthetically derived conopeptide. In: Biochemical and Biophysical Research Communications, 335 (3). pp. 965-972.

Kumar, Gayatri and Mudgal, Richa and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2018) Use of designed sequences in protein structure recognition. In: BIOLOGY DIRECT, 13 .

Kumar, Gayatri and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2022) Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Gaps: Implications in Distant Homology Detection. [Book Chapter]

Kumar, Gnanesh and Mishra, Padmanabh and Anantharam, Vellareddy and Surolia, Avadhesha (2015) Luffa acutangula agglutinin: Primary structure determination and identification of a tryptophan residue involved in its carbohydrate-binding activity using mass spectrometry. In: IUBMB LIFE, 67 (12). pp. 943-953.

Kumar, Gnanesh B S and Surolia, Avadhesha (2017) Comprehensive analysis of alpha 2-3-linked sialic acid specific Maackia amurensis leukagglutinin reveals differentially occupied N-glycans and C-terminal processing. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 94 (A). pp. 114-121.

Kumar, Gnanesh B S and Surolia, Avadhesha (2016) Site specific N-glycan profiling of NeuAc(alpha 2-6)-Gal/GalNAc-binding bark Sambucus nigra agglutinin using LC-MSn revealed differential glycosylation. In: GLYCOCONJUGATE JOURNAL, 33 (6). pp. 907-915.

Kumar, Gyanendra and Parasuraman, Prasanna and Sharma, Shailendra Kumar and Banerjee, Tanushree and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2007) Discovery of a Rhodanine Class of Compounds as Inhibitors of Plasmodium falciparum Enoyl-Acyl Carrier Protein Reductase. In: Journal Of Medical Chemisty, 50 (11). pp. 2665-2675.

Kumar, Kaleesh M and Jha, Niki S and Mohan, S and Jha, Shailendra K (2014) Reduced graphene oxide-supported nickel oxide catalyst with improved CO tolerance for formic acid electrooxidation. In: INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, 39 (24). pp. 12572-12577.

Kumar, Manish and Chatterji, Dipankar (2008) Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis. In: Microbiology, 154 (Part 1). pp. 2942-2955.

Kumar, Mukesh and Behera, Aruna K and Kumar, Sanjay and Srinivas, VR and Das, Hasi R and Surolia, Avadhesha and Das, Rakha H (1999) Expression, Purification and Characterization of Peanut (Arachis hypogaea) Agglutinin (PNA) from Baculovirus Infected Insect Cells. In: Bioscience Reports, 19 (3). pp. 227-234.

Kumar, N and Ghosh, M and Manikandan, P and Basak, S and Deepa, A and Singh, M (2022) Resonance assignment and secondary structure of the tandem harmonin homology domains of human RTEL1. In: Biomolecular NMR Assignments, 16 (1). pp. 159-164.

Kumar, N and Taily, IM and Singh, C and Kumar, S and Rajmani, RS and Chakraborty, D and Sharma, A and Singh, P and Thakur, KG and Varadarajan, R and Ringe, RP and Banerjee, P and Banerjee, I (2023) Identification of diphenylurea derivatives as novel endocytosis inIdentification of diphenylurea derivatives as novel endocytosis inhibitors that demonstrate broad-spectrum activity against SARS-CoV-2 and influenza A virus both in vitro and in vivohibitors that demonstrate broad-spectrum activity against SARS-CoV-2 and influenza A virus both in vitro and in vivo. In: PLoS Pathogens, 19 (5).

Kumar, N and Taneja, A and Ghosh, M and Rothweiler, U and Sundaresan, NR and Singh, M (2024) Harmonin homology domain-mediated interaction of RTEL1 helicase with RPA and DNA provides insights into its recruitment to DNA repair sites. In: Nucleic Acids Research, 52 (3). pp. 1450-1470.

Kumar, PS Anil and Chatterji, Dipankar (2009) A decade of KVPY - A challenging experience. In: Current science, 97 (9). pp. 1282-1286.

Kumar, Parimal and Chhibber, Manmohan and Surolia, Avadhesha (2007) How pantothenol intervenes in Coenzyme-A biosynthesis of Mycobacterium tuberculosis. In: Biochemical and Biophysical Research Communications, 361 (4). pp. 903-909.

Kumar, Prasun and Bansal, Manju (2015) Dissecting pi-helices: sequence, structure and function. In: FEBS JOURNAL, 282 (22). pp. 4415-4432.

Kumar, Prasun and Bansal, Manju (2012) HELANAL-Plus: a web server for analysis of helix geometry in protein structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 30 (6). pp. 773-783.

Kumar, Prasun and Bansal, Manju (2015) Identification of local variations within secondary structures of proteins. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (5). pp. 1077-1086.

Kumar, Prasun and Bansal, Manju (2016) Structural and functional analyses of PolyProline-II helices in globular proteins. In: JOURNAL OF STRUCTURAL BIOLOGY, 196 (3). pp. 414-425.

Kumar, Prasun and Halder, Swagata and Bansal, Manju (2019) Biomolecular Structures: Prediction, Identification and Analyses. [Book Chapter]

Kumar, Prasun and Kailasam, Senthilkumar and Chakraborty, Shaunak and Bansal, Manju (2014) MolBridge: a program for identifying nonbonded interactions in small molecules and biomolecular structures. In: JOURNAL OF APPLIED CRYSTALLOGRAPHY, 47 (5). pp. 1772-1776.

Kumar, Ritesh and Srivastava, Richa and Singh, Ramendra Kumar and Surolia, Avadhesha and Rao, Desirazu N (2008) Activation and inhibition of DNA methyltransferases by S-adenosyl-$L$-homocysteine analogues. In: Bioorganic & Medicinal Chemistry, 16 (5). pp. 2276-2285.

Kumar, S and Athreya, A and Gulati, A and Nair, RM and Mahendran, I and Ranjan, R and Penmatsa, A (2021) Structural basis of inhibition of a transporter from Staphylococcus aureus, NorC, through a single-domain camelid antibody. In: Communications Biology, 4 (1).

Kumar, S and Bansal, M (1998) Dissecting alpha-helices: Position-specific analysis of alpha-helices in globular proteins. In: Proteins: Structure, Funcaction, and Bioinformatics, 31 (4). pp. 460-470.

Kumar, S and Khan, MZ and Khandelwal, N and Chongtham, C and Singha, B and Dabla, A and Behera, D and Singh, A and Gopal, B and Arimbasseri, GA and Kamat, SS and Nandicoori, VK (2022) Mycobacterium tuberculosis Transcription Factor EmbR Regulates the Expression of Key Virulence Factors That Aid in Ex Vivo and in Vivo Survival. In: mBio, 13 (3).

Kumar, S and Mahendran, I and Athreya, A and Ranjan, R and Penmatsa, A (2020) Isolation and structural characterization of a Zn2+-bound single-domain antibody against NorC, a putative multidrug efflux transporter in bacteria. In: The Journal of biological chemistry, 295 (1). pp. 55-68.

Kumar, S and Singh, S and Chatterjee, A and Bajpai, P and Sharma, S and Katpara, S and Bhakhri, H and Lodha, R and Dutta, S and Luthra, K (2023) Erratum: Recognition determinants of improved HIV-1 neutralization by a heavy chain matured pediatric antibody (iScience (2023) 26(9), (S2589004223016565), (10.1016/j.isci.2023.107579)). In: iScience, 26 (10).

Kumar, S and Singh, S and Chatterjee, A and Bajpai, P and Sharma, S and Katpara, S and Lodha, R and Dutta, S and Luthra, K (2023) Recognition determinants of improved HIV-1 neutralization by a heavy chain matured pediatric antibody. In: iScience, 26 (9).

Kumar, S and Venkatesha, MA and Balaram, P (2022) Mechanistic Investigations on N-CαBond Cleavages in Dibasic Peptides Containing Internal Lys and Arg Residues. In: Journal of the American Society for Mass Spectrometry, 33 (9). pp. 1598-1606.

Kumar, S and Venkatesha, MA and Lall, S and Prakash, S and Balaram, P (2020) Mechanistic Insights into an Unusual Side-Chain-Mediated N-CαBond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin. In: Journal of the American Society for Mass Spectrometry, 31 (5). pp. 1083-1092.

Kumar, S and Vijayasarathy, M and Venkatesha, MA and Sunita, P and Balaram, P (2020) Cone snail analogs of the pituitary hormones oxytocin/vasopressin and their carrier protein neurophysin. Proteomic and transcriptomic identification of conopressins and conophysins. In: Biochimica et Biophysica Acta - Proteins and Proteomics, 1868 (5).

Kumar, Sandeep and Bansal, Manju (1998) Geometrical and Sequence Characteristics of $\alpha$-Helices in Globular Proteins. In: Biophysical Journal, 75 (4). pp. 1935-1944.

Kumar, Sandeep and Bansal, Manju (1996) Structural and Sequence Characteristics of Long alpha Helices in Globular Proteins. In: Biophysical Journal., 71 (03). pp. 1574-1586.

Kumar, Sanjay and Kapoor, Mili and Surolia, Namita and Surolia, Avadhesha (2004) One Step Synthesis of Novel Antimicrobial 2-Hydroxy Diaryl Ethers Through Domestic Microwave Heating. In: Synthetic Communications, 34 (3). pp. 413-420.

Kumar, Sanjeev and Panda, Harekrushna and Makhdoomi, Muzamil Ashraf and Mishra, Nitesh and Safdari, Haaris Ahsan and Chawla, Himanshi and Aggarwal, Heena and Reddy, Elluri Seetharami and Lodha, Rakesh and Kabra, Sushil Kumar and Chandele, Anmol and Dutta, Somnath and Luthra, Kalpana (2019) An HIV-1 Broadly Neutralizing Antibody from a Clade C-Infected Pediatric Elite Neutralizer Potently Neutralizes the Contemporaneous and Autologous Evolving Viruses. In: JOURNAL OF VIROLOGY, 93 (4).

Kumar, Sanjeev and Prakash, Sunita and Gupta, Kallol and Dongre, Aparna and Balaram, Padmanabhan and Balaram, Hemalatha (2016) Unexpected functional implication of a stable succinimide in the structural stability of Methanocaldococcus jannaschii glutaminase. In: NATURE COMMUNICATIONS, 7 .

Kumar, Satish M and Mrudula, T and Mitra, N and Reddy, Bhanuprakash G (2004) Enhanced degradation and decreased stability of eye lens \alpha-crystallin upon methylglyoxal modification. In: Experimental Eye Research, 79 (4). pp. 577-583.

Kumar, Senthil G and Upadhyay, Sanjeev and Mathew, MK and Sarma, Siddhartha P (2011) Solution structure of BTK-2, a novel hK(v)1.1 inhibiting scorpion toxin, from the eastern Indian scorpion Mesobuthus tamulus. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1814 (4). pp. 459-469.

Kumar, Sivakumar Prasanth (2018) PLHINT: A knowledge-driven computational approach based on the intermolecular H bond interactions at the protein-ligand interface from docking solutions. In: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 79 . pp. 194-212.

Kumar, Sivakumar Prasanth (2018) Receptor pharmacophore ensemble (REPHARMBLE): a probabilistic pharmacophore modeling approach using multiple protein-ligand complexes. In: JOURNAL OF MOLECULAR MODELING, 24 (10).

Kumar, Suresh EVK and Singh, Jai D and Singh, Harkesh B and Das, Kalyan and Verghese, Babu (1997) Synthesis of some functionalised isomeric bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF) and dithiophenetetrathiafulvalene (DTTTF) pi-donors. In: Tetrahedron, 53 (34). pp. 11627-11644.

Kumar, Sushant and Ramappa, Raghavendra and Pamidimukkala, Kiranmayee and Rao, C D and Suguna, K (2018) New tetrameric forms of the rotavirus NSP4 with antiparallel helices. In: ARCHIVES OF VIROLOGY, 163 (6). pp. 1531-1547.

Kumar, Sushant and Suguna, Kaza (2018) Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein. In: FEBS OPEN BIO, 8 (9). pp. 1379-1394.

Kumari, N and Bandyopadhyay, D and Kumar, V and Venkatesh, DB and Prasad, S and Prakash, S and Krishnaswamy, PR and Balaram, P and Bhat, N (2021) Glycation of albumin and its implication in Diabetes: A comprehensive analysis using mass spectrometry. In: Clinica Chimica Acta, 520 . pp. 108-117.

Kunal, K and Tiwari, R and Dhaked, HPS and Surolia, A and Panda, D (2020) Mechanistic insight into the effect of BT-benzo-29 on the Z-ring in Bacillus subtilis. In: IUBMB Life .

Kundu, N and Verma, P and Kumar, A and Dhar, V and Dutta, S and Chattopadhyay, K (2020) N-Terminal Region of Vibrio parahemolyticus Thermostable Direct Hemolysin Regulates the Membrane-Damaging Action of the Toxin. In: Biochemistry, 59 (4). pp. 605-614.

Kurre, D and Suguna, K (2021) Network of Entamoeba histolytica HSP18.5 dimers formed by two overlapping IV-X-IV motifs. In: Proteins: Structure, Function and Bioinformatics .

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Mishra, D and Pahujani, S and Mitra, N and Srivastava, A and Srinivasan, R (2021) Identification of a Potential Membrane-Targeting Sequence in the C-Terminus of the F Plasmid Segregation Protein SopA. In: Journal of Membrane Biology . (In Press)

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Mishra, Poonam and Narayanan, Rishikesh (2015) High-conductance states and A-type K+ channels are potential regulators of the conductance-current balance triggered by HCN channels. In: JOURNAL OF NEUROPHYSIOLOGY, 113 (1). pp. 23-43.

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Mishra, S (2023) Emerging Trends in Cryo-EM-based Structural Studies of Neuropathological Amyloids. In: Journal of Molecular Biology, 435 (24).

Mishra, S and Kundu, N and Pramanick, I and Kumar, A and Chattopadhyay, K and Dutta, S (2022) Structural insights into thermostable direct hemolysin of Vibrio parahaemolyticus using single-particle cryo-EM. In: Proteins: Structure, Function and Bioinformatics .

Mishra, S and Roy, A and Chatterjee, A and Dutta, S (2024) Membrane Rupture and Lipid�Protein Interaction of γ-Hemolysin from Staphylococcus aureus Using Cryo-EM. [Book Chapter]

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Mishra, Satyendra and Karmodiya, Krishanpal and Parasuraman, Prasanna and Surolia, Avadhesha and Surolia, Namita (2008) Design, synthesis, and application of novel triclosan prodrugs as potential antimalarial and antibacterial agents. In: Bioorganic & Medicinal Chemistry, 16 (10). pp. 5536-5546.

Mishra, Satyendra and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2008) Synthesis and exploration of novel curcumin analogues as anti-malarial agents. In: Bioorganic & Medicinal Chemistry, 16 (6). pp. 2894-2902.

Mishra, Satyendra and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2008) Synthesis and exploration of novel curcumin analogues as anti-malarial agents. In: Bioorganic & Medicinal Chemistry, 16 (6). pp. 2894-2902.

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Misra, Ashish and Surolia, Namita and Surolia, Avadhesha (2009) Catalysis and mechanism of malonyl transferase activity in type II fatty acid biosynthesis acyl carrier proteins. In: Molecular BioSystems, 5 (6). pp. 651-659.

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Misra, Neeraj and Siddiqui, Shamoon Ahmad and Srivastava, Ruby and Pandey, Anoop Kumar and Jain, Sudha (2010) Vibrational analysis of boldine hydrochloride using QM/MM approach. In: Spectroscopy: An International Journal, 24 (5). pp. 483-499.

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Mitra, Ashima and Sarma, Siddhartha P (2008) Escherichia coli ilvN Interacts with the FAD Binding Domain of ilvB and Activates the AHAS I Enzyme. In: Biochemistry, 47 (6). pp. 1518-1521.

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Mitra, Nivedita and Sharon, Nathan and Surolia, Avadhesha (2003) Role of N-Linked Glycan in the Unfolding Pathway of Erythrina corallodendron Lectin. In: Biochemistry, 42 (42). pp. 12208-12216.

Mitra, Nivedita and Sinha, Sharmistha and Kini, Manjunatha R and Surolia, Avadhesha (2005) Analysis of the peanut agglutinin molten globule-like intermediate by limited proteolysis. In: Biochimica et Biophysica Acta(BBA) - General Subjects, 1725 (3). pp. 283-289.

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Pramanick, I and Sengupta, N and Mishra, S and Pandey, S and Girish, N and Das, A and Dutta, S (2021) Conformational flexibility and structural variability of SARS-CoV2 S protein. In: Structure, 29 (8). 834-845.e5.

Prasad, BV Venkataram and Balaram, H and Balaram, P (1984) Acyclic peptides as conformational models Crystal structure of Boc-Aib-Leu-Pro-NHMe± 2H2O. In: International journal of peptide and protein, 24 (2). pp. 135-140.

Prasad, BV Venkatram and Chandrasekaran, R (1977) Conformation of polypeptide-chains containing both l-residues and D-residues .2. Double-helical structures of poly-ld-peptides. In: International Journal of Peptide and Protein Research, 10 (2). 129 -138.

Prasad, BV Venkataram and Balaram, Hemalatha and Balaram, P (1982) Type II beta-turn conformation of pivaloyl-L-prolyl-a-aminoiso-butyryl-N-methylamide: Theoretical, spectroscopic and X-ray studies. In: Biopolymers, 21 (7). pp. 1261-1273.

Prasad, BV Venkataram and Balaram, Hemalatha and Balaram, P (1982) Type II beta-turn conformation of pivaloyl-L-prolyl-alpha-aminoisobutyryl-N-methylamide: Theoretical, spectroscopic, and X-ray studies. In: Biopolymers, 27 (7). pp. 1261-1273.

Prasad, BV Venkataram and Balaram, Padmanabhan (1982) X-Pro peptides. A theoretical study of the hydrogen bonded conformations of (alpha-aminoisobutyryl-L -prolyl)n sequences. In: International Journal of Biological Macromolecules, 4 (2). pp. 99-102.

Prasad, BV Venkataram and Ravi, A and Balaram, Padmanabhan (1981) Molecular structure of a cyclic tetrapeptide disulfide. A novel 310 helical conformation with an S-S bridge. In: Biochemical and Biophysical Research Communications, 103 (4). pp. 1138-1144.

Prasad, BV Venkataram and Sasisekharan, V (1979) A Case Study of the Conformation of Poly(alpha-aminoisobutyric acid): alpha- or 310-Helix. In: Macromolecule, 12 (6). pp. 1107-1110.

Prasad, BV Venkataram and Shamala, N and Nagaraj, R and Chandrasekaran, R and Balaram, P (1979) The crystal and molecular structure of benzyloxycarbonyl-a-amino-isobutyryl-L-prolyl-methylamide. The observation of an X2-Pro3 Type III b-turn. In: Biopolymers, 18 (7). 1635 -1646.

Prasad, BV Venkatram and Balaram, P (1982) X-Pro peptides. A theoretical study of the hydrogen bonded conformations of (a-aminoisobutyryl-L -prolyl)n sequences. In: International Journal of Biological Macromolecules, 4 (2). pp. 99-102.

Prasad, BVLS and Suguna, K (2003) Effect of pH on the structure of rhizopuspepsin. In: Acta Crystallographica Section D: Biological Crystallography, 59 (10). pp. 1755-1761.

Prasad, BVLS and Suguna, K (2002) Role of water molecules in the structure and function of aspartic proteinases. In: Acta Crystallographica Section D: Biological Crystallography, 58 (2). pp. 250-259.

Prasad, BVV and Sudha, TS and Balaram, V (1982) Molecular structure of Boc-Aib-Aib-Phe-Met-NH2·DMSO. A fragment of a biologically active enkephalin analogue. In: Perkin Transactions 1 (2). pp. 417-421.

Prasad, GS and Vijayan, M (1991) X-ray studies on crystalline complexes involving amino acids and peptides. XXI. Structure of a (1:1) complex between L-phenylalanine and D-valine. In: Acta Crystallographica Section C, 47 (12). pp. 2603-2606.

Prasad, GS and Vijayan, M (1991) X-ray studies on crystalline complexes involving amino acids and peptides. XXIII. Variability in ionization state, conformation and molecular aggregation in the complexes of succinic acid with DL- and L-lysine. In: Acta Crystallographica Section B, B47 (6). pp. 927-935.

Prasad, GS and Vijayan, M (1993) X-ray studies on crystalline complexes involving amino acids and peptides. XXV. Structures of DL-proline hemisuccinic acid and glycyl-L-histidinium semisuccinate monohydrate and a comparative study of amino-acid and peptide complexes of succinic acid. In: Acta Crystallographica Section B, 49 (Part 2). pp. 348-356.

Prasad, S and Mitra, S and Subramanian, E and Velmurugan, D and Rao, RB and Balaram, P (1994) Coexistence of Folded and Extended Conformations of a Tripeptide Containing alpha,alpha-Di-n-propylglycine in Crystals. In: Biochemical and Biophysical Research Communications, 198 (2). pp. 424-430.

Prasad, Sridhar G and Vijayan, M (1993) X-ray Ray Studies on Crystalline Complexes Involving Amino Acids and Peptides. XXIV. Different Ionization States and Novel Aggregation Patterns in the Complexes of Succinic Acid with DL- and L-Histidine. In: Biopolymers, 33 (2). pp. 283-292.

Prasad, Sridhar G and Vijayan, M (1990) X-ray studies on crystalline complexes involving amino acids and peptides XIX. Effects of change in chirality in the complexes of succinic acid with dl- and l-arginine. In: International Journal of Peptide & Protein Research, 35 (4). pp. 357-364.

Prasad, Sudhanand and Balaji, Rao R and Bergstrand, Hakan and Lundquist, Britta and Becker, Elmer L and Balaram, P (1996) Conformation-activity correlations for chemotactic tripeptide analogs incorporating dialkyl residues with linear and cyclic alkyl sidechains at position 2. In: International Journal Of Peptide And Protein Research, 48 (04). pp. 312-318.

Prasad, Venkataram BV and Balaram, Hemalatha and Balaram, P (1982) Type II \beta-Turn Conformation of Pivaloyl-L-Prolyl-\alpha-Aminoisobutyryl-N-Methylamide: Theoretical, Spectroscopic, and X-Ray Studies. In: Biopolymers, 21 (7). pp. 1261-1273.

Prasad, Venkataram BV and Shamala, N and Nagaraj, R and Balaram, P (1980) The Crystal Structure of Benzyloxycarbonyl-${(\alpha-aminoisobutyryl)}_2$-L-Alanyl Methyl Ester. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 36 (1). pp. 107-110.

Prasad, Venkataram BV and Shamala, N and Nagaraj, R and Chandrasekaran, R and Balaram, P (1979) Crystal and Molecular Structure of Benzyloxycarbonyl-\alpha-Aminoisobutyryl-L-Prolyl Methylamide: The Observation of an $X_2-{Pro}_3$ Type III \beta-Turn. In: Biopolymers, 18 (7). pp. 1635-1646.

Prasad, Venkataram BV and Sudha, Subrahmanyam T and Balaram, Padmanabhan (1983) Molecular structure of Boc-Aib-Phe-Aib-Met-$NH_2$.DMSO. A fragment of a biologically active enkephalin analog. In: Journal of the Chemical Society: Perkin Transactions 1: Organic and Bio-Organic Chemistry (2). pp. 417-421.

Prasanna, V and Gopal, B and Murthy, MRN and Santi , DV and Balaram, Padmanabhan (1999) Effect of amino acid substitutions at the subunit interface on the stabiity and aggregation properties of a dimeric protein: role of Arg 178 and Arg 218 at the dimer interface of thymidylate synthase. In: Proteins: Structure, Function, and Bioinformatics, 34 (3). pp. 356-368.

Prasanna, Variath and Bhattacharjya, Surajit and Balaram, Padmanabhan (1998) Synthetic Interface Peptides as Inactivators of Multimeric Enzymes: Inhibitory and Conformational Properties of Three Fragments from Lactobacillus casei Thymidylate Synthase. In: Biochemistry, 37 (19). pp. 6883-6893.

Pratap, JV and Bradbrook, GM and Reddy, GB and Surolia, A and Raftery, J and Helliwell, JR and Vijayan, M (2001) The combination of molecular dynamics with crystallography for elucidating protein–ligand interactions: a case study involving peanut lectin complexes with T-antigen and lactose. In: Acta Crystallographica Section D, 57 (11). pp. 1584-1594.

Pratap, JV and Jeyaprakash, Arockia A and Rani, Geetha P and Sekar, K and Surolia, A and Vijayan, M (2002) Crystal Structures of Artocarpin, a Moraceae Lectin with Mannose Specificity, and its Complex with Methyl-alpha-D-mannose: Implications to the Generation of Carbohydrate Specificity. In: Journal of Molecular Biology, 317 (2). pp. 237-247.

Pratap, JV and Ravishankar, R and Vijayan, M (2000) X-ray studies on crystalline complexes involving amino acids and peptides. XXXV. Invariance and variability in amino acid aggregation in the complexes of maleic acid with L-histidine and L-lysine. In: Acta Crystallographica Section B, 56 . pp. 690-696.

Preininger, Doris and Stiegler, Michael J and Gururaja, KV and Vijayakumar, SP and Torsekar, Varun R and Sztatecsny, Marc and Hödl, Walter (2013) Getting a kick out of it: multimodal signalling during male–male encounters in the foot-flagging frog Micrixalus aff. saxicola from the Western Ghats of India. In: Current Science, 105 (12). pp. 1735-1740.

Priya, Amulya and Sugatha, Jini and Parveen, Sameena and Lacas-Gervais, Sandra and Raj, Prateek and Gilleron, Jerome and Datta, Sunando (2017) Essential and selective role of SNX12 in transport of endocytic and retrograde cargo. In: JOURNAL OF CELL SCIENCE, 130 (16). pp. 2707-2721.

Pudi, Renuka and Abhiman, Saraswathi and Srinivasan, Narayanaswamy and Das, Saumitra (2003) Hepatitis C Virus Internal Ribosome Entry Site-mediated Translation Is Stimulated by Specific Interaction of Independent Regions of Human La Autoantigen. In: Journal of Biological Chemistry, 278 (14). pp. 12231-12240.

Pugalenthi, G and Shameer, K and Srinivasan, N and Sowdhamini, R (2006) HARMONY: a server for the assessment of protein structures. In: Nucleic Acids Research, 34 . W231-W234.

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Pulla Rao, Ch and Balaram, Padmanabhan and Rao, CNR (1983) An infrared spectroscopic study of C7 intramolecular hydrogen bonds in peptides. In: Biopolymers, 22 (9). pp. 2091-2104.

Purana, Kasturi Lahiri and Raghothama, S and Balaram, P (1987) A H-1-NMR STUDY OF BILIRUBIN IX-ALPHA SOLUBILIZATION BY CHOLATE MICELLES - APPLICATION OF NUCLEAR OVERHAUSER EFFECTS. In: Biochimica et Biophysics Acta, 922 (1). pp. 67-77.

Puranam, Kasturi L and Balaram, P (1987) Solubilization of bilirubin by cholate micelles. Spectroscopic and gel permeation studies. In: Proceedings of the Indian Academy of Sciences - Chemical Sciences, 98 (5-6). pp. 453-468.

Puranam, Kasturi L and Raghothama, S and Balaram, P (1987) A proton-NMR study of bilirubin IX\alpha solubilization by cholate micelles: application of nuclear Overhauser effects. In: Biochimica et Biophysica Acta, Lipids and Lipid Metabolism, 922 (1). pp. 67-77.

Puranam, Kasturi Lahiri and Balaram, P (1987) Spectroscopic studies on the interaction of bilirubin with symmetrical alkyl diamines. In: Journal of Biosciences, 11 (1-4). pp. 485-493.

Puri, KD and Khan, MI and Gupta, D and Surolia, A (1993) Thermodynamic and kinetic studies on the mechanism of binding of methylumbelliferyl galactosides to the basic agglutinin from winged bean (Psophocarpus tetragonolobus). In: Journal of Biological Chemistry, 268 (22). pp. 16378-16387.

Puri, KD and Surolia, Avadhesha (1994) Amino acid sequence of the winged bean (Psophocarpus tetragonolobus) basic lectin. Adenine binding and identification of the active-site tryptophan residue. In: Journal of Biological Chemistry, 269 (49). pp. 30917-30926.

Puri, Kamal Deep and Gopalakrishnan, B and Avadhesha, Surolia (1992) Carbohydrate binding specificity of the $T_n$-antigen binding lectin from Vicia villosa seeds $(VVLB_4)$. In: FEBS Letters, 312 (2-3). pp. 208-212.

Puri, Kamal Deep and Surolia, Avadhesha (1994) Thermodynamics of lectin-sugar interaction: Binding of sugars to winged bean (Psophocarpus tetragonolobus) basic agglutinin (WBAI). In: International Conference on Thermodynamics of Solutions and Biological Systems, JAN 03-06, 1993, NEW DELHI, INDIA.

Purushothaman, SS and Park, HS and Cleary, PP (2004) Promotion of fibronectin independent invasion by C5a peptidase into epithelial cells in group A Streptococcus. In: Indian Journal of Medical Research, 119 . pp. 44-47.

Purushothaman, Sudha and Annamalai, Karthikeyan and Anil, Tyagi K and Surolia, Avadhesha (2011) Diversity in Functional Organization of Class I and Class II Biotin Protein Ligase. In: PLos One, 6 (3).

Purushothaman, Sudha and Gupta, Garima and Srivastava, Richa and Ramu, Vasanthakumar Ganga and Surolia, Avadhesha (2008) Ligand Specificity of Group I Biotin Protein Ligase of Mycobacterium tuberculosis. In: PLoS ONE, 3 (5).

Purwar, Mansi and Pokorski, Jonathan K and Singh, Pranveer and Bhattacharyya, Sanchari and Arendt, Heather and DeStefano, Joanne and La Branche, Celia C and Montefiori, David C and Finn, MG and Varadarajan, Raghavan (2018) Design, display and immunogenicity of HIV1 gp120 fragment immunogens on virus-like particles. In: VACCINE, 36 (42). pp. 6345-6353.

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Quigley, J and Misquith, S and Surolia, A and Srimal, S and Armstrong, P (1994) Preliminary investigation of the molecular basis for the functional differences between the two pentraxins limulin and C-reactive protein from the plasma of the American horseshoe crab, Limulus polyphemus. In: General Scientific Meeting of the Marine-Biological-Laboratory, AUG 15-17, 1994, WOODS HOLE.

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Raghava, Smita and Barua, Bipasha and Singh, Pradeep K and Das, Mili and Madan, Lalima and Bhattacharyya, Sanchari and Bajaj, Kanika and Gopal, B and Varadarajan, Raghavan and Gupta, Munishwar N (2008) Refolding and simultaneous purification by three-phase partitioning of recombinant proteins from inclusion bodies. In: Protein Science, 17 (11). pp. 1987-1997.

Raghava, Smita and Aquil, Samina and Bhattacharyya, Sanchari and Varadarajan, Raghavan and Gupta, Munishwar N (2008) Strategy for purifying maltose binding protein fusion proteins by affinity precipitation. In: Journal of Chromatography A, 1194 (1). pp. 90-95.

Raghavan, Mohan and Amrutur, Bharadwaj and Narayanan, Rishikesh and Sikdar, Sujit Kumar (2013) Synconset Waves and Chains: Spiking Onsets in Synchronous Populations Predict and Are Predicted by Network Structure. In: PLOS ONE, 8 (10).

Raghavan, Mohan and Amrutur, Bharadwaj and Srinivas, Kalyan V and Sikdar, Sujit K (2012) A study of epileptogenic network structures in rat hippocampal cultures using first spike latencies during synchronization events. In: PHYSICAL BIOLOGY, 9 (5).

Raghavan, Mohan and Amrutur, Bharadwaj and Srinivas, Kalyan V and Sikdar, SujitK (2012) A study of epileptogenic network structures in rat hippocampal cultures using first spike latencies during synchronization events. In: PHYSICAL BIOLOGY, 9 (5).

Raghavan, SS and Iqbal, S and Ayyadurai, N and Gunasekaran, K (2022) Insights in the structural understanding of amyloidogenicity and mutation-led conformational dynamics of amyloid beta (Aβ) through molecular dynamics simulations and principal component analysis. In: Journal of Biomolecular Structure and Dynamics, 40 (12). pp. 5577-5587.

Raghavan, Sowmya and Burma, Pradeep K and Brahmachari, Samir K (1997) Positional Preferences of Polypurine/Polypyrimidine Tracts in Saccharomyces cerevisiae Genome: Implications for cis Regulation of Gene Expression. In: Journal of Molecular Evolution, 45 (5). pp. 485-498.

Raghavan, Sowmya and Hariharan, Ramesh and Brahmachari, Samir K (2000) Polypurine.polypyrimidine sequences in complete bacterial genomes: preference for polypurines in protein-coding regions. In: GENE, 242 (1-2). pp. 275-283.

Raghavender, Upadhyayula Surya and Aravinda, Subrayashastry and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2010) Peptide hairpin nucleation with the obligatory Type I' beta-turn Aib-(D)Pro segment. In: Organic and Biomolecular Chemistry, 8 (14). pp. 3133-3135.

Raghavender, Upadhyayula S and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Kantharaju, * and Rai, Rajkishor and Balaram, Padmanabhan (2009) Characterization of Water Wires inside Hydrophobic Tubular Peptide Structures. In: Journal of the American chemical society, 131 (42). pp. 15130-15132.

Raghavender, Upadhyayula Surya and Chatterjee, Bhaswati and Saha, Indranil and Rajagopal, Appavu and Shamala, Narayanaswamy and Balaram, Padmanabhan (2011) Entrapment of a Water Wire in a Hydrophobic Peptide Channel with an Aromatic Lining. In: Journal of Physical Chemistry B, 115 (29). pp. 9236-9243.

Raghavendra, K and Ananthanarayanan, VS (1981) Beta-structure of polypeptides in non-aqueous solutions. I. Spectral characteristics of the polypeptide backbone. In: International Journal of Peptide & Protein Research, 17 (4). pp. 412-419.

Raghavendra, K and Ananthanarayanan, VS (1981) Beta-structure of polypeptides in non-aqueous solutions. II. Side-chain orientation. In: International Journal of Peptide & Protein Research, 17 (4). pp. 420-425.

Raghavendra, K and Sasisekharan, V (1979) Conformational analysis of the right-hand twisted antiparallel β-Structure. In: International Journal of Peptide & Protein Research, 14 (4). pp. 326-338.

Raghothama, S and Chaddha, M and Balaram, P (1996) NMR Analysis of a Conformational Transition in an Acyclic Peptide. Model System for Studying Helix Unfolding. In: Journal of Physical Chemistry, 100 (50). pp. 19666-19671.

Raghothama, S and Chaddha, Manjula and Banumathi, S and Ravikumar, Krishnan and Velmurugan, D and Balaram, P (1998) Conformational Interconversions in Peptide beta-Turns: Discrimination Between Enantiomeric Conformations by Chiral Perturbation. In: Biopolymers, 45 (3). pp. 191-202.

Raghothama, S and Ramakrishnan, C and Balasubramanian, D and Balaram, P (1989) Conformational Analysis of Cyclolinopeptide A, a Cyclic Nonapeptide: Nuclear Overhauser Effect and Energy Minimization Studies. In: Biopolymers, 28 . pp. 573-588.

Raghothama, Srinivasa Rao and Awasthi, Satish Kumar and Balaram, Padmanabhan (1998) Beta-Hairpin nucleation by Pro-Gly beta-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide. In: Journal of Chemical Society, Perkin Transactions 2 (2). pp. 137-144.

Raghunandanan, Sajith and Ramachandran, Ranjit and Gomez, Roshna Lawrence and Devanarayanan, Sivasankar and Bommakanti, Akhila and Kondapi, Anand Kumar and Varadarajan, Raghavan and Kumar, Ramakrishnan Ajay (2018) Rv0474 is a copper-responsive transcriptional regulator that negatively regulates expression of RNA polymerase subunit in Mycobacterium tuberculosis. In: FEBS JOURNAL, 285 (20). pp. 3849-3869.

Rahaman, Abdur and Srinivasan, N and Shamala, N and Shaila, MS (2003) The Fusion Core Complex of the Peste des Petits Ruminants Virus is a Six-helix Bundle Assembly. In: Biochemistry, 42 (4). pp. 922-931.

Rahaman, Abdur and Srinivasan, Naryanaswamy and Shamala, Narayanaswamy and Shaila, Melkote Subbarao (2004) Phosphoprotein of the Rinderpest Virus Forms a Tetramer through a Coiled Coil Region Important for Biological Function. In: Journal of Biological Chemistry, 279 (22). pp. 23606-23614.

Rai, A and Yelamanchi, SD and Radotra, BD and Gupta, SK and Mukherjee, KK and Tripathi, M and Chhabra, R and Ahuja, CK and Kumar, N and Pandey, A and Korbonits, M and Dutta, P and Gaston-Massuet, C (2022) Phosphorylation of β-catenin at Serine552 correlates with invasion and recurrence of non-functioning pituitary neuroendocrine tumours. In: Acta Neuropathologica Communications, 10 (1).

Rai, Ankit and Gupta, Tilak Kumar and Kini, Sudarshan and Kunwar, Ambarish and Surolia, Avadhesha and Panda, Dulal (2013) CXI-benzo-84 reversibly binds to tubulin at colchicine site and induces apoptosis in cancer cells. In: BIOCHEMICAL PHARMACOLOGY, 86 (3). pp. 378-391.

Rai, Ankit and Surolia, Avadhesha and Panda, Dulal (2012) An Antitubulin Agent BCFMT Inhibits Proliferation of Cancer Cells and Induces Cell Death by Inhibiting Microtubule Dynamics. In: PLOS ONE, 7 (8). e44311.

Rai, Rajkishor and Raghothama, Srinivasarao and Balaram, Padmanabhan (2006) Design of a Peptide Hairpin Containing a Central Three-Residue Loop. In: Journal of American Chemical Society, 128 (8). 2675 -2681.

Rai, Rajkishor and Raghothama, Srinivasarao and Sridharan, Rajagopalan and Balaram, Padmanabhan (2006) Tuning the $\beta$-Turn Segment in Designed Peptide $\beta$-Hairpins: Construction a Stable Type I' $\beta$-Turn Nucleus and Hairpin-Helix Transition Promoting Segments. In: Biopolymers, 88 (3). pp. 350-361.

Rai, Rajkishor and Raghothama, Srinivasarao and Sridharan, Rajagopalan and Balaram, Padmanabhan (2007) Tuning the beta-turn segment in designed peptide beta-hairpins: Construction of a stable type I ' beta-turn nucleus and hairpin-helix transition promoting segments. In: Biopolymers, 88 (3). 350 -361.

Rai, Rajkishor and Vasudev, Prema G and Ananda, Kuppanna and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Karle, Isabella L and Balaram, Padmanabhan (2007) Hybrid Peptides: Expanding the \beta Turn in Peptide Hairpins by the Insertion of \beta-, \gamma-, and \delta-Residues. In: Chemistry - A European Journal, 13 (20). pp. 5917-5926.

Rai, Rajkishor and Aravinda, S and Kanagarajadurai, K and Raghothama, S and Shamala, Narayanaswamy and Balaram, Padmanabhan (2006) Diproline Templates as Folding Nuclei in Designed Peptides. Conformational Analysis of Synthetic Peptide Helices Containing Amino Terminal Pro-Pro Segments. In: Journal of the American Chemical Society, 128 (24). pp. 7916-7928.

Raina, Varshiesh and Gupta, Sarika and Yadav, Saurabh and Surolia, Avadhesha (2013) Simvastatin Induced Neurite Outgrowth Unveils Role of Cell Surface Cholesterol and Acetyl CoA Carboxylase in SH-SY5Y Cells. In: PLOS ONE, 8 (9).

Raj, Antony P and Balaram, P (1985) Conformational Effects on Peptide Aggregation in Organic Solvents: Spectroscopic Studies of Two Chemotactic Tripeptide Analogs. In: Biopolymers, 24 (7). pp. 1131-1146.

Raj, Antony P and Das, Manoj K and Balaram, P (1988) Conformations and Mitochondrial Uncoupling Activity of Synthetic Emerimicin Fragments. In: Biopolymers, 27 (4). pp. 683-701.

Raj, P and Karthik, S and Arif, SM and Varshney, U and Vijayan, M (2020) Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1. In: Acta Crystallographica Section D: Structural Biology, 76 . pp. 982-992.

Raj, P and Selvam, K and Roy, K and Mani Tripathi, S and Kesharwani, S and Gopal, B and Varshney, U and Sundriyal, S (2022) Identification of a new and diverse set of Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) inhibitors using structure-based virtual screening: Experimental validation and molecular dynamics studies. In: Bioorganic and Medicinal Chemistry Letters, 76 .

Raj, R and Nadig, S and Patel, T and Gopal, B (2020) Structural and biochemical characteristics of two Staphylococcus epidermidis RNase J paralogs RNase J1 and RNase J2. In: Journal of Biological Chemistry, 295 (49). pp. 16863-16876.

Raj, Rishi and Mitra, Sharmistha and Gopal, Balasubramanian (2018) Characterization of Staphylococcus epidermidis Polynucleotide phosphorylase and its interactions with ribonucleases RNase J1 and RNase J2. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 495 (2). pp. 2078-2084.

Raja, S and Paul, A and Raghavan, S and Narayanan, S and Shee, S and Singh, A and Varshney, U and Gopal, B and Vijayan, M (2022) Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition. In: Current Science, 122 (3). pp. 281-289.

Rajagopal, Malini and Rao, Kekambareswara and Ayyer, Jayalekshmy and Sasisekharan, V (1987) Synthesis of a distamycin analog: tris(m-benzamido) compound. In: Indian Journal of Chemistry, Sect. B: Organic Chemistry including Medicinal Chemistry, 26 (11). pp. 1021-1024.

Rajagopal, Appavu and Aravinda, Subrayashastry and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2011) Chain Length Effects on Helix-Hairpin Distribution in Short Peptides with Aib-(D)Ala and Aib-Aib Segments. In: Biopolymers, 96 (6). pp. 744-756.

Rajagopal, Sathyapriya and Vishveshwara, Saraswathi (2005) Short hydrogen bonds in proteins. In: FEBS Journal, 272 (8). pp. 1819-1832.

Rajagopalan, M and Rao, KE and Ayyer, J and Sasisekharan, V (1987) Synthesis Of A Distamycin Analog - Tris(Meta-Benzamido) Compound. In: Indian Journal of Chemistry - Section B: Organic and Medicinal Chemistry, 26 (11). pp. 1021-1024.

Rajagopalan, Malini and Ayyer, Jayalekshmy and Sasisekharan, V (1985) Interaction of non-intercalative drugs with DNA: Distamycin analogues. In: Journal of Biosciences, 7 (1). pp. 27-32.

Rajagopalan, Malini and Brahmachari, Samir K and Sasisekharan, V and Srivastava, Rakesh (1983) X-Ray diffraction studies on Mycobacterium smegmatis DNA. In: Biopolymers, 22 (7). pp. 1633-1635.

Rajagopalan, Malini and Gupta, Goutam and Sasisekharan, V (1983) Base-base interactions in nucleic acids containing A-T base pairs Structure of poly[d(A—T)]. In: FEBS Letters, 159 (2). pp. 285-289.

Rajagopalan, Malini and Gupta, Goutam and Sasisekharan, V (1983) Base-base interactions in nucleic acids containing A-T base pairs: Structure of poly[d(A-T)]. In: FEBS Letters, 159 (1-2). pp. 285-289.

Rajan, Rahul and Awasthi, Satish Kumar and Bhattacharjya, Surajit and Balaram, P (1997) ‘‘Teflon-Coated Peptides’’: Hexafluoroacetone Trihydrate as a Structure Stabilizer for Peptides. In: Biopolymers, 42 (2). pp. 125-128.

Rajan, Rahul and Balaram, P (1996) A model for the interaction of trifluoroethanol with peptides and proteins. In: International Journal of Peptide And Protein Research, 48 (04). pp. 328-336.

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Rajaram, V and Bhavani, BS and Kaul, Purnima and Prakash, V and Rao, Appaji N and Savithri, HS and Murthy, MRN (2007) Structure determination and biochemical studies on Bacillus stearothermophilus E53Q serine hydroxymethyltransferase and its complexes provide insights on function and enzyme memory. In: FEBS Journal, 274 (16). pp. 4148-4160.

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Ranganathan, Melpakkam and Rao, Vallurupalli SR and Balaram, Padmanabhan (1977) Acyclic sugars: the ring-opening of 2-acetamido-2-deoxyhexopyranoses in trifluoroacetic acid. In: Carbohydrate Research, 58 (1). pp. 245-248.

Ranganathan, Subramania and Muraleedharan, KM and Bharadwaj, Parimal and Chatterji, Dipankar and Karle, Isabella (2002) The design and synthesis of redox core-alpha amino acid composites based on thiol-disulfide exchange mechanism and a comparative study of their zinc abstraction potential from [CCXX] boxes in proteins. In: Tetrahedron, 58 (14). pp. 2861-2874.

Rangannan, Vetriselvi and Bansal, Manju (2007) Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability. In: Journal of Biosciences, 32 (5). pp. 871-881.

Rangannan, Vetriselvi and Bansal, Manju (2010) High-quality annotation of promoter regions for 913 bacterial genomes. In: Bioinformatics, 26 (24). pp. 3043-3050.

Rangannan, Vetriselvi and Bansal, Manju (2009) Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition. In: Molecular BioSystems, 5 (12). pp. 1758-1769.

Rani, Geetha P and Bachhawat, Kiran and Misquith, Sandra and Surolia, Avadhesha (1999) Thermodynamic Studies of Saccharide Binding to Artocarpin, a B-Cell Mitogen, Reveals the Extended Nature of Its Interaction with Mannotriose [3,6-Di-O-(alpha -D-mannopyranosyl)-D-mannose]. In: Journal of Biologica Chemistry, 274 (42). pp. 29694-29698.

Rani, Geetha P and Bachhawat, Kiran and Reddy, Bhanuprakash G and Oscarson, Stefan and Surolia, Avadhesha (2000) Isothermal Titration Calorimetric Studies on the Binding of Deoxytrimannoside Derivatives with Artocarpin: Implications for a Deep-Seated Combining Site in Lectins. In: Biochemistry, 39 (35). 10755 -10760.

Rani, N and Surolia, A (2024) Targeted suppression of MEP pathway genes DXS, IspD and IspF to explore the mycobacterial metabolism and survival. In: International Journal of Biological Macromolecules, 272 .

Rani, Nidhi and Hazra, Samannaya and Singh, Amrita and Surolia, Avadhesha (2019) Functional annotation of putative fadE9 of Mycobacterium tuberculosis as isobutyryl-CoA dehydrogenase involved in valine catabolism. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 122 . pp. 45-57.

Rani, P and George, B and Sabarishree, V and Biswas, S and Madhurya, V and Pal, A and Rajmani, RS and Das, S (2024) MicroRNA-22-3p displaces critical host factors from the 5� UTR and inhibits the translation of Coxsackievirus B3 RNA. In: Journal of Virology, 98 (2).

Ranjan, Kishu and Sharma, Anupama and Surolia, Avadhesha and Pathak, Chandramani (2014) Regulation of HA14-1 mediated oxidative stress, toxic response, and autophagy by curcumin to enhance apoptotic activity in human embryonic kidney cells. In: BIOFACTORS, 40 (1). pp. 157-169.

Ranjani, C Vasuki and Rangarajan, Sarani and Michael, Daliah and Sekar, K and Roy, S (2008) Role of water molecules and ion pairs in Dps and related ferritin-like structures. In: International Journal of Biological Macromolecules, 43 (4). pp. 333-338.

Ranjini, Arumugam Sri and Das, Puspendu K and Balaram, Padmanabhan (2005) Binding Constant Measurement by Hyper-Rayleigh Scattering: Bilirubin-Human Serum Albumin Binding as a Case Study. In: Journal of Physical Chemistry B, 109 (12). pp. 5950-5953.

Rao, EK and Sasisekharan, V (1990) Synthesis of distamycin and netropsin analogs. Part II. DNA binding bisquaternary ammonium heterocycles analogs to NSC 101327. In: Indian Journal of Chemistry, Section B: Organic Chemistry Including Medicinal Chemistry, 29 (6). pp. 503-507.

Rao, KE and Sasisekharan, V (1990) Synthesis of distamycin and netropsin analogs. Part III. Biologically active analogs of tris(m-benzamido) compound. In: Indian Journal of Chemistry, Section B: Organic Chemistry Including Medicinal Chemistry, 29 (6). pp. 508-513.

Rao, Ramachandra Satish P and Surolia, Avadhesha and Surolia, Namita (2003) Triclosan: A shot in the arm for antimalarial chemotherapy. In: Molecular and Cellular Biochemistry, 253 (1-2). pp. 55-63.

Rao, SN and Sasisekharan, V (1984) Conformations of 3-methylpurine nucleosides - implications on the structure of dna duplexes. In: Indian Journal of Biochemistry & Biophysics, 21 (4). pp. 222-226.

Rao, Shilpa P and Sikdar, SK (2006) Astrocytes in 17\beta-estradiol treated mixed hippocampal cultures show attenuated calcium response to neuronal activity. In: GLIA, 53 (8). pp. 817-826.

Rao, VSR and Reddy, BVS and Mukhopadhyay, C and Biswas, M (1990) Computer simulation of protein-carbohydrate complexes Application to concanavalin A and L-arabinose-binding protein. [Book Chapter]

Rao, VSR and Sathyana, BK (1973) Biological Significance Of Shapes Of Polysaccharides. In: Current Science (Bangalore), 42 (19). pp. 684-685.

Rao, VSR and Vasudevan, TK (1983) Conformation and Activity of \beta-Lactam Antibiotics. In: Critical Reviews in Biochemistry and Molecular Biology, 14 (3). pp. 173-206.

Rao, Basuthkar Jagadeeswar and Brahmachari, Samir K and Rao, Manchanahalli R Satyanarayana (1983) Structural Organization Of The Meiotic Prophase Chromatin in the Rat Testis. In: Journal of Biological Chemistry, 258 (22). pp. 13478-13485.

Rao, DN Ramakrishna and Mahadevan, S and Balaram, P (1978) Structural studies of the hen's egg lipovitellins. NMR and fluorescence investigations. In: Chemistry and Physics of Lipids, 22 (2). pp. 105-113.

Rao, Ekambareswara K and Dasgupta, Dipak and Sasisekharan, V (1988) Interaction of synthetic analogs of distamycin and netropsin with nucleic acids. Does curvature of ligand play a role in distamycin-DNA interactions? In: Biochemistry, 27 (8). pp. 3018-3024.

Rao, GS Jagannatha and Murthy, HM Krishna and Rao, N Appaji and Vijayan, M (1982) N-Carbamoyl-DL-aspartic acid. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 38 (5). pp. 1672-1674.

Rao, KSJ and Easwaran, KRK (1997) 27 Al-NMR studies of aluminum transport across yeast cell membranes. In: Molecular and Cellular Biochemistry, 175 (1-2). pp. 59-63.

Rao, KSJ and Ramesh, J and Easwaran, KRK (1999) Neuropeptide Y structure is modulated by aluminium in the hypothalamus. In: ALZHEIMERS REPORTS, 2 (2). 99-103 .

Rao, Narasinga BN and Kumar, Anil and Balaram, Hemalatha and Ravi, A and Balaram, P (1983) Nuclear Overhauser Effects and circular Dichroism as Probes of \beta.-turn Conformations in Acyclic and Cyclic Peptides with Pro-X Sequences. In: Journal of the American Chemical Society, 105 (25). pp. 7423-7428.

Rao, Narasinga BN and Ramakrishnan, C and Balaram, P (1979) Metal binding to pyridoxal derivatives. An NMR study of the interaction of Eu(III) with pyridoxal phosphate and pyridoxamine phosphate. In: Journal of Biosciences, 1 (1). pp. 35-47.

Rao, Pulla and Balaram, P (1982) Molecular Structure of t-Butyloxycarbonyl-Leu-Aib-Pro-Val-Aib-Methyl Ester, a Fragment of Alamethicin and Suzukacillin: A $3_{10}$-Helical Pentapeptide. In: Biopolymers, 21 (12). pp. 2461-2472.

Rao, Pulla and Nagaraj, R and Rao, CNR and Balaram, P (1979) Infrared Spectroscopy as a Probe for the Development of Secondary Structure in the Amino-Terminal Segment of Alamethicin. In: FEBS Letters, 100 (2). pp. 244-248.

Rao, S and Sikdar, SK (2000) Modification of alpha subunit of RIIA sodium channels by aconitine. In: Pflugers Archiv European Journal of Physiology, 439 (3). pp. 349-355.

Rao, SS and Kundapura, SV and Dey, D and Palaniappan, C and Sekar, K and Kulal, A and Ramagopal, UA (2024) Cumulative phylogenetic, sequence and structural analysis of Insulin superfamily proteins provide unique structure-function insights. In: Molecular Informatics, 43 (9).

Rao, Shashidhar N and Sasisekharan, V (1986) Conformations of Dinucleoside Monophosphates in Relation to Duplex DNA Structures. In: Biopolymers, 25 (1). pp. 17-30.

Rao, Shashidhar N and Sasisekharan, V (1983) Handedness of duplex DNA: role of the glycosydic torsion. In: International Journal of Biological Macromolecules, 5 (2). pp. 83-88.

Rao, Shilpa P and Sikdar, SK (2004) Estradiol-induced changes in the activity of hippocampal neurons in network culture are suppressed by co-incubation with gabapentin. In: Brain Research, 1022 (1-2). pp. 126-136.

Rao, Shilpa P and Sikdar, Sujit Kumar (2007) Acute treatment with 17\beta-estradiol attenuates astrocyte-astrocyte and astrocyte-neuron communication. In: GLIA, 55 (16). pp. 1680-1689.

Rao, VSR (1981) Theoretical-studies on the binding specificities of transpeptidase(s) and penicillinases. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 27.

Rao, VSR and Biswas, Margaret and Mukhopadhyay, Chaitali and Balaji, PV (1989) Computer simulation of protein—carbohydrate complexes: application to arabinose-binding protein and pea lectin. In: Journal of Molecular Structure, 194 . pp. 203-214.

Rao, VSR and Reddy, VS and Mukhopadhyay, C (1989) Computer Simulation of Protein—Carbohydrate Complexes. In: Abstracts of Papers - American Chemical Society, National Meeting, 197 . 61 -CARB.

Rao, VSR and Sekharudu, Y Chandra (1985) Computer modelling studies on the modes of binding of some of the α-glycosidically linked disaccharides to concanavalin A. In: Journal of Biosciences, 8 (1-2). 389 -401.

Rao, VSR and Vijayalakshmi, KS (1974) Theoretical studies on the conformations of aldopentopyranose tetraacetates. In: Carbohydrate Research, 33 (2). pp. 363-365.

Rao, VSR and Vijayalakshmi, KS (1974) Theoretical studies on the conformations of aldopentopyranose tetraacetates. In: Carbohydrate Research, 33 (2). pp. 363-365.

Rathore, Ravindranath Singh and Banerjee, Arindam (2003) Water-mediated supramolecular $\beta$-sheet from a short synthetic peptide containing non-coded amino acids. In: Current Science, 85 (8). pp. 1217-1220.

Rathore, Ujjwal and Kesavardhana, Sannula and Mallajosyula, Vamsee Aditya V and Varadarajan, Raghavan (2014) Immunogen design for HIV-1 and influenza. In: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1844 (11, SI). pp. 1891-1906.

Rathore, Ujjwal and Purwar, Mansi and Vignesh, Venkada Subramanian and Das, Raksha and Kumar, Aditya Arun and Bhattacharyya, Sanchari and Arendt, Heather and DeStefano, Joanne and Wilson, Aaron and Parks, Christopher and La Branche, Celia C and Montefiori, David C and Varadarajan, Raghavan (2018) Bacterially expressed HIV-1 gp120 outer-domain fragment immunogens with improved stability and affinity for CD4-binding site neutralizing antibodies. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 293 (39). pp. 15002-15020.

Rathore, Ujjwal and Saha, Piyali and Kesavardhana, Sannula and Kumar, Aditya A and Mascola, John R and Varadarajan, Raghavan (2014) N-linked Glycosylation of HIV-1 core gp120 is Not Required for Native Trimer Formation or Viral Infectivity. In: PROTEIN SCIENCE, 23 (1).

Rathore, Ujjwal and Saha, Piyali and Kesavardhana, Sannula and Kumar, Aditya Arun and Datta, Rohini and Devanarayanan, Sivasankar and Das, Raksha and Mascola, John R and Varadarajan, Raghavan (2017) Glycosylation of the core of the HIV-1 envelope subunit protein gp120 is not required for native trimer formation or viral infectivity. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 292 (4). pp. 10197-10219.

Rathour, RK and Narayanan, R (2014) Homeostasis of functional maps in active dendrites emerges in the absence of individual channelostasis. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111 (17). E1787-E1796.

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Ratnaparkhi, Girish S and Awasthi, Satish Kumar and Rani, P and Balaram, P and Varadarajan, R (2000) Structural and thermodynamic consequences of introducing alpha-aminoisobutyric acid in the S peptide of ribonuclease S. In: Protein Engineering, 13 (10). pp. 697-702.

Ratnaparkhi, Girish S and Ramachandran, S and Udgaonkar, Jayant B and Varadarajan, R (1998) Discrepancies between the NMR and X-ray structures of uncomplexed barstar: Analysis suggests that packing densities of protein structures determined by NMR are unreliable. In: Biochemistry, 37 (19). pp. 6958-6966.

Ratnaparkhi, Girish S and Varadarajan, R (2001) Osmolytes stabilize Ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states. In: Journal of Biological Chemistry, 276 (31). pp. 28789-28798.

Ratnaparkhi, Girish S and Varadarajan, R (1997) Structural studies of protein unfolding. In: Current Science (Bangalore), 72 (11). pp. 826-830.

Ratnaparkhi, Girish S and Varadarajan, R (2000) Thermodynamic and Structural Studies of Cavity Formation in Proteins Suggest That Loss of Packing Interactions Rather Than the Hydrophobic Effect Dominates the Observed Energetics. In: Biochemistry, 39 (40). pp. 12365-12374.

Ratnaparkhi, Girish S and Varadarajan, R (2000) Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics. In: Biochemistry, 39 (40). pp. 12365-12374.

Ratnaparkhi, Girish S and Varadarajan, R (1999) X-ray Crystallographic Studies of the Denaturation of Ribonuclease S. In: Proteins:Structure, Function, and Genetics, 36 (3). pp. 282-294.

Raval, Sujana and Gowda, Sharan B and Singh, Desh D and Chandra, Nagasuma R (2004) A database analysis of jacalin-like lectins: Sequence-structure-function relationships. In: Glycobiology, 14 (12). pp. 1247-1263.

Ravi, A and Balaram, P (1983) Cyclic Peptide Disulfides Consecutive \beta -Turn Conformation of a Synthetic Model Peptide Corresponding to the Active Site of Thioredoxin. In: Biochimica et Biophysica Acta, Protein Structure and Molecular Enzymology, 745 (3). pp. 301-309.

Ravi, A and Balaram, P (1984) Stabilization of \beta -Turn Conformations in Pro-X Sequences by Disulphide Bridging. Synthesis and Solution Conformations of Five Cyclic Cystine Peptides. In: Tetrahedron, 40 (13). pp. 2577-2583.

Ravi, A and Prasad, BW and Balaram, P (1983) Cyclic Peptide Disulfides - Solution And Solid-State Conformation Of Boc-Cys-Pro-Aib-Cys-S-S-Bridge-Nhme,A Disulfide-Bridged Peptide Helix. In: Journal of the American Chemical Society, 105 (1). pp. 105-109.

Ravi, V and Jain, A and Khan, D and Ahamed, F and Mishra, S and Giri, M and Inbaraj, M and Krishna, S and Sarikhani, M and Maity, S and Kumar, S and Shah, RA and Dave, P and Pandit, AS and Rajendran, R and Desingu, PA and Varshney, U and Das, S and Kolthur-Seetharam, U and Rajakumari, S and Singh, M and Sundaresan, NR (2019) SIRT6 transcriptionally regulates global protein synthesis through transcription factor Sp1 independent of its deacetylase activity. In: Nucleic Acids Research, 47 (17). pp. 9115-9131.

Ravi Kiran, M and Bansal, Manju (1998) Molecular dynamics simulations on parallel and antiparallel C.G*G triplexes. In: Journal of Biomolecular Structure & Dynamics, 16 (3). pp. 511-526.

Ravikumar, A and De Brevern, AG and Srinivasan, N (2021) Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility. In: Journal of Physical Chemistry B .

Ravikumar, A and Gopnarayan, MN and Subramaniam, S and Srinivasan, N (2022) Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography. In: IUCrJ, 9 . pp. 98-103.

Ravikumar, A and Srinivasan, N (2021) Hypervariability of accessible and inaccessible conformational space of proteins. In: Current Research in Structural Biology, 3 . pp. 229-238.

Ravikumar, Ashraya and Ramakrishnan, Chandrasekharan and Srinivasan, Narayanaswamy (2019) Stereochemical Assessment of (phi,psi) Outliers in Protein Structures Using Bond Geometry-Specific Ramachandran Steric-Maps. In: STRUCTURE, 27 (12). 1875+.

Ravindra, Gudihal and Balaram, Padmanabhan (2005) Plasmodium Falciparum Triosephosphate Isomerase: New Insights Into an Old Enzyme. In: Pure and Applied Chemistry, 77 (1). pp. 281-289.

Ravindra, Gudihal and Ranganayaki, Rappal S and Raghothama, Srinivasa and Srinivasan, Mandayam C and Gilardi, Richard D and Karle, Isabella L and Balaram, Padmanabhan (2004) Two Novel Hexadepsipeptides with Several Modified Amino Acid Residues Isolated from the Fungus. In: Chemistry & Biodiversity, 1 (3). pp. 489-504.

Ravishankar, R and Chandra, Nagasuma R and Vijayan, M (1998) X-Ray studies on Crystalline Complexes Involving Amino Acids and Peptides. XXXIV. Novel Mode of Aggregation, Interaction Patterns, and Chiral Effects on Maleic Acid Complexes of DL- and L-Arginine. In: Journal of Biomolecular Structure and Dynamics, 15 (6). pp. 1093-1100.

Ravishankar, R and Ravindran, M and Suguna, K and Surolia, A and Vijayan, M (1997) Crystal Structure of the Peanut Lectin-T-Antigen Complex. Carbohydrate Specificity Generated by Water Bridges. In: Current Science, 72 (11). pp. 855-861.

Ravishankar, R and Ravindran, M and Suguna, K and Surolia, A and Vijayan, M (1996) Crystal structure of peanut agglutimn-T-antigen complex. In: Progress in Biophysics and Molecular Biology, 65 (Suppl1). p. 126.

Ravishankar, R and Sagar, Bidya M and Roy, S and Purnapatre, K and Handa, P and Varshney, U and Vijayan, M (1998) X-Ray analysis of a complex of Escherichia Coli uracil DNA glycosylase(EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG. In: Nucleic Acids Research, 26 (21). pp. 4880-4887.

Ravishankar, R and Suguna, K and Surolia, A and Vijayan, M (1999) Structures of the complexes of peanut lectin with methyl-$\beta$-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins. In: Acta Crystallographica Section D: Biological Crystallography, 55 (8). pp. 1375-1382.

Ravishankar, R and Surolia, A and Vijayan, M and Lim, Sungtaek and Kishi, Yoshito (1998) Preferred Conformation of C-Lactose at the Free and Peanut Lectin Bound States. In: Journal of the American Chemical Society, 120 (44). pp. 11297-11303.

Ravishankar, R and Thomas, CJ and Suguna, K and Surolia, A and Vijayan, M (2001) Crystal Structures of the Peanut Lectin-Lactose Complex at Acidic pH: Retention of Unusual Quaternary Structure, Empty and Carbohydrate Bound Combining Sites, Molecular Mimicry and Crystal Packing Directed by Interactions at the Combining Site. In: Proteins: Structure, Function, and Genetics, 43 (3). pp. 260-270.

Ray, Shashikant and Jindal, Bhavya and Kunal, Kishore and Surolia, Avadhesha and Panda, Dulal (2015) BT-benzo-29 inhibits bacterial cell proliferation by perturbing FtsZ assembly. In: FEBS JOURNAL, 282 (20). pp. 4015-4033.

Ray, Soumya S and Balaram, Hemalatha and Balaram, P (1999) Unusual stability of a multiply nicked form of Plasmodium falciparum triosephosphate isomerase. In: Chemistry and Biology, 6 (9). pp. 625-637.

Ray, Soumya S and Balaram, Padmanabhan (1999) 1-Anilino-8-naphthalene sulfonate (ANS) binding to proteins revisited: Investigation of dye binding to molten globule states by electrospray ionization mass spectrometry. In: Journal of physical Chemistry B, 103 (34). pp. 7068-7072.

Ray, Soumya S and Singh, Kumar S and Balaram, P (2001) An Electrospray Ionization Mass Spectrometry Investigation of 1-Anilino-8- Naphthalene-Sulfonate (ANS) Binding to Proteins. In: Journal of the American Society for Mass Spectrometry, 12 (4). pp. 428-438.

Ray, Upasana and Roy, Chaitrali L and Kumar, Anuj and Mani, Prashant and Joseph, Agnel P and Sudha, G and Sarkar, Debi P and Srinivasan, N and Das, Saumitra (2013) Inhibition of the Interaction Between NS3 Protease and HCV IRES With a Small Peptide: A Novel Therapeutic Strategy. In: MOLECULAR THERAPY, 21 (1). pp. 57-67.

Rebehmed, J and de Brevern, AG and Sowdhamini, R and Joseph, AP (2022) Editorial: Advances in Molecular Docking and Structure-Based Modelling. In: Frontiers in Molecular Biosciences, 9 .

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Reddy, B Uma and Mullick, Ranajoy and Kumar, Anuj and Sharma, Geetika and Bag, Paromita and Roy, Chaitrali Laha and Sudha, Govindarajan and Tandon, Himani and Dave, Pratik and Shukla, Ashutosh and Srinivasan, Priyanka and Nandhitha, Madhusudhan and Srinivasan, Narayanaswamy and Das, Saumitra (2018) A natural small molecule inhibitor corilagin blocks HCV replication and modulates oxidative stress to reduce liver damage. In: ANTIVIRAL RESEARCH, 150 . pp. 47-59.

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Reddy, G Bhanuprakash and Bhat, K Seetharam (1998) UVB irradiation alters the activities and kinetic properties of the enzymes of energy metabolism in rat lens during aging. In: Journal of Photochemistry and Photobiology B: Biology, 42 (01). pp. 40-46.

Reddy, G Bhanuprakash and Narayanan, Sriram and Reddy, P Yadagiri and Surolia, Ira (2002) Suppression of DTT-induced aggregation of abrin by alpha A- and alpha B-crystallins: a model aggregation assay for alpha-crystallin chaperone activity in vitro. In: Febs Letters, 522 (1-3). pp. 59-64.

Reddy, G Bhanuprakash and Srinivas, VR and Ahmad, Nisar and Surolia, Avadhesha (1999) Molten globule-like state of peanut lectin monomer retains its carbohydrate specificity - Implications in protein folding and legume lectin oligomerization. In: Journal of Biological Chemistry, 274 (8). pp. 4500-4503.

Reddy, Madhusudana MB and Basuroy, Krishnayan and Aravinda, Subrayashastry and Balaram, Padmanabhan (2016) Crystallographic characterization of the alpha,gamma C-12 helix in hybrid peptide sequences. In: JOURNAL OF PEPTIDE SCIENCE, 22 (8). pp. 504-510.

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Reddy, Vijay Sai and Rao, VSR (1992) Modes of binding of α(1–2) linked manno-oligosaccharides to concanavalin A. In: International Journal of Biological Macromolecules, 14 (4). pp. 185-192.

Rekha, N and Machado, SM and Narayanan, C and Krupa, A and Srinivasan, N (2004) Interaction Interfaces of Protein Domains Are Not Topologically Equivalent Across Families Within Superfamilies: Implications for Metabolic and Signaling Pathways. In: Proteins: Structure, Function, and Bioinformatics, 58 (2). pp. 339-353.

Rituparna, S Roy and Hosahudya, N Gopi and Raghothama, Srinivasarao and Karle, Isabella L and Balaram, Padmanabhan (2006) Hybrid peptide hairpins containing alpha- and omega-amino acids: Conformational analysis of decapeptides with unsubstituted beta-, gamma-, and delta-residues at positions 3 and 8. In: Chemistry - A European Journal, 12 (12). pp. 3295-3302.

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Roy, Rituparna S and Gopi, Hosahudya N and Raghothama, S and Gilardi, Richard D and Karle, Isabella L and Balaram, Padmanabhan (2005) Peptide Hairpins with Strand Segments Containing \alpha - and \beta - Amino Acid Residues: Cross- Strand Aromatic Interactions of Facing Phe Residues. In: Peptide Science, 80 (6). pp. 787-799.

Roy, Rituparna S and Gopi, Hosahudya N and Raghothama, Srinivasa Rao and Karle, Isabella L and Balaram, Padmanabhan (2006) Hybrid Peptide Hairpins Containing $\alpha$-and $\varpi$-Amino Acids: Conformational Analysis of Decapeptides with Unsubstituted $\beta$-, $\gamma$-, and $\delta$-Residues at Positions 3 and 8. In: Chemistry - A European Journal, 12 (12). 3295 -3302.

Roy, Rituparna S and Karle, Isabella L and Raghothama, S and Balaram, P (2004) $\alpha,\beta$hybrid peptides:a polypeptide helix with a central segment containing two consecutive $\beta$-amino acid residues. In: Proceedings of the National Academy of Sciences, 101 (47). pp. 16478-16482.

Roy, Siddhartha and Gupta, Surbhi and Das, Satyabrata and Sekar, K and Chatterji, Dipankar and Vijayan, M (2004) X-ray Analysis of Mycobacterium smegmatis Dps and a Comparative Study Involving Other Dps and Dps-like Molecules. In: Journal of Molecular Biology, 339 (5). pp. 1103-1113.

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Roy, Siddhartha and Saraswathi, Ramachandran and Gupta, Surbhi and Sekar, K and Chatterji, Dipankar and Vijayan, M (2007) Role of N and C-terminal Tails in DNA Binding and Assembly in Dps: Structural Studies of Mycobacterium smegmatis Dps Deletion Mutants. In: Journal of Molecular Biology, 370 (4). pp. 752-767.

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Sabareesh, V and Ranganayaki, RS and Raghothama, S and Bopanna, MP and Balaram, Hemalatha and Srinivasan, MC and Balaram, Padmanabhan (2007) Identification and characterization of a library of microheterogeneous cyclohexa-depsipeptides from the fungus. In: Journal of Natural Products, 70 (5). pp. 715-729.

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Sabareesh, Varatharajan and Balaram, Padmanabhan (2006) Tandem electrospray mass spectrometric studies of proton and sodium ion adducts of neutral peptides with modified N- and C-termini: synthetic model peptides and microheterogeneous peptaibol antibiotics. In: Rapid Communications in Mass Spectrometry, 20 (4). pp. 618-628.

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Shafique, M and Sarma, SP (2022) Potential anticancer peptides design from the cysteine rich plant defensins: An in silico approach. In: Indian Journal of Biochemistry and Biophysics, 59 (9). pp. 900-908.

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Shambat, Srikanth Mairpady and Siemens, Nikolai and Monk, Ian R and Mohan, Disha B and Mukundan, Santhosh and Krishnan, Karthickeyan Chella and Prabhakara, Sushma and Snall, Johanna and Kearns, Angela and Vandenesch, Francois and Svensson, Mattias and Kotb, Malak and Gopal, Balasubramanian and Arakere, Gayathri and Norrby-Teglund, Anna (2016) A point mutation in AgrC determines cytotoxic or colonizing properties associated with phenotypic variants of ST22 MRSA strains. In: NATURE PUBLISHING GROUP, MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND .

Shameer, Khader and Madan, Lalima L and Veeranna, Shivamurthy and Gopal, Balasubramanian and Sowdhamini, Ramanathan (2010) PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes. In: BMC Bioinformatics, 11 .

Shankaramma, SC and Singh, Kumar S and Sathyamurthy, Aruna and Balaram, P (1999) Insertion of Methylene Units into the Turn Segment of Designed beta-Hairpin Peptides. In: Journal of the American Chemical Society, 121 (23). pp. 5360-5363.

Shanmugam, Haripriya and Ganguly, Subhasish and Priya, Badma (2022) Plant food bioactives and its effects on gut microbiota profile modulation for better brain health and functioning in Autism Spectrum Disorder individuals: A review. In: Food Frontiers, 3 (1). pp. 124-141. ISSN 2643-8429

Shanujah, M and Deepagoda, TKK and Smits, KM and Shreedharan, V and Paramrswaran, TG and Babu, GLS (2021) Gas diffusivity-based characterization of aggregated soils linking to methane migration in shallow subsurface. In: Vadose Zone Journal .

Sharma, Umender K and Chatterji, Dipankar (2010) Transcriptional switching in Escherichia coli during stress and starvation by modulation of Sigma 70 activity. In: FEMS Microbiology Reviews, 34 (5). pp. 646-657.

Sharma, Vivek and Vijayan, Mamannamana and Surolia, Avadhesha (1999) Process for preparing recombinant peanut agglutinin mutants for improved diagnosis of T-Antigen expression. Patent Number(s) IN 0182773 A. Patent Assignee(s) Indian Institute of Science.

Sharma, A and Chandrashekar, CR and Krishna, S and Sowdhamini, R (2024) Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2. In: Journal of Molecular Biology, 436 (19).

Sharma, A and Chattopadhyay, G and Chopra, P and Bhasin, M and Thakur, C and Agarwal, S and Ahmed, S and Chandra, N and Varadarajan, R and Singh, R (2020) VapC21 Toxin Contributes to Drug-Tolerance and Interacts With Non-cognate VapB32 Antitoxin in Mycobacterium tuberculosis. In: Frontiers in Microbiology, 11 .

Sharma, A and Singh, N and Bhasin, M and Tiwari, P and Chopra, P and Varadarajan, R and Singh, R (2024) Deciphering the role of VapBC13 and VapBC26 toxin antitoxin systems in the pathophysiology of Mycobacterium tuberculosis. In: Communications Biology, 7 (1).

Sharma, AK and Sharma, SK and Surolia, A and Surolia, N and Sarma, SP (2006) Solution structures of conformationally equilibrium forms of holo-acyl carrier protein (PfACP) from Plasmodium falciparum provides insight into the mechanism of activation of ACPs. In: Biochemistry, 45 (22). pp. 6904-6916.

Sharma, Akshara and Seal, Aniruddha and Iyer, Sahithya S and Srivastava, Anand (2022) Enthalpic and entropic contributions to interleaflet coupling drive domain registration and antiregistration in biological membrane. In: Physical Review E, 105 (4). ISSN 2470-0045

Sharma, Alok and Pohlentz, Gottfried and Bobbili, Kishore Babu and Jeyaprakash, Arockia A and Chandran, Thyageshwar and Mormann, Michael and Swamy, Musti J and Vijayan, M (2013) The sequence and structure of snake gourd (Trichosanthes anguina) seed lectin, a three-chain nontoxic homologue of type II RIPs. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 69 (8). pp. 1493-1503.

Sharma, Alok and Sekar, K and Vijayan, M (2009) Structure, dynamics, and interactions of jacalin. Insights from molecular dynamics simulations examined in conjunction with results of X-ray studies. In: Proteins: Structure, Function, and Bioinformatics, 77 (4). pp. 760-777.

Sharma, Alok and Thamotharan, S and Roy, Siddhartha and Vijayan, M (2006) X-ray studies of crystalline complexes involving amino acids and peptides. XLIII. Adipic acid complexes of L- and DL-lysine. In: Acta Crystallographica Section C, 62 (3). o148-o152.

Sharma, Alok and Vijayan, Mamannamana (2011) Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: An X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes. In: Glycobiology, 21 (1). pp. 23-33.

Sharma, Alok and Vijayan, Mamannamana (2011) Quaternary association in beta-prism I fold plant lectins: Insights from X-ray crystallography, modelling and molecular dynamics. In: Journal of Biosciences, 36 (5). pp. 793-808.

Sharma, Alok Kumar and Sharma, Shailendra Kumar and Surolia, Namita and Sarma, Siddhartha P (2005) NMR Assignment of the Holo-ACP from Malaria Parasite Plasmodium falciparum. In: Journal of Biomolecular NMR, 32 (3). p. 260.

Sharma, Ankur and Gadkari, Rupali A and Ramakanth, Satthenapalli V and Padmanabhan, Krishnanand and Madhumathi, Davanam S and Devi, Lakshmi and Appaji, Lingappa and Aster, Jon C and Rangarajan, Annapoorni and Dighe, Rajan R (2015) A novel Monoclonal Antibody against Notch1 Targets Leukemia-associated Mutant Notch1 and Depletes Therapy Resistant Cancer Stem Cells in Solid Tumors. In: SCIENTIFIC REPORTS, 5 .

Sharma, Deepak and Balamurali, MM and Chakraborty, Kausik and Kumaran, Sowmini and Jeganathan, Sadasivam and Rashid, Umar and Ingallinella, Paolo and Varadarajan, Raghavan (2005) Protein Minimization of the gp120 Binding Region of Human CD4 \dagger. In: Biochemistry, 44 (49). pp. 16192-16202.

Sharma, Indra Mani and Dhanaraman, Thillaivillalan and Mathew, Ritta and Chatterji, Dipankar (2012) Synthesis and Characterization of a Fluorescent Analogue of Cyclic di-GMP. In: BIOCHEMISTRY, 51 (27). pp. 5443-5453.

Sharma, Indra Mani and Petchiappan, Anushya and Chatterji, Dipankar (2014) Quorum Sensing and Biofilm Formation in Mycobacteria: Role of c-di-GMP and Methods to Study This Second Messenger. In: IUBMB LIFE, 66 (12). pp. 823-834.

Sharma, Indra Mani and Prakash, Sunita and Dhanaraman, Thillaivillalan and Chatterji, Dipankar (2014) Characterization of a dual-active enzyme, DcpA, involved in cyclic diguanosine monophosphate turnover in Mycobacterium smegmatis. In: MICROBIOLOGY-SGM, 160 (10). pp. 2304-2318.

Sharma, M and Desiraju, S and Chaurey, D and Mehta, BK (2002) GC-MS study of Artabotrys odoratissimus fatty oil (leaves). In: Grasas y Aceites, 53 (2). pp. 187-189.

Sharma, P and Vijaykumar, A and Raghavan, JV and Rananaware, SR and Alakesh, A and Bodele, J and Rehman, JU and Shukla, S and Wagde, V and Nadig, S and Chakrabarti, S and Visweswariah, SS and Nandi, D and Gopal, B and Jhunjhunwala, S (2022) Particle uptake driven phagocytosis in macrophages and neutrophils enhances bacterial clearance. In: Journal of Controlled Release, 343 . pp. 131-141.

Sharma, SK (2004) Characterization and inhibition of Plasmodium falciparum beta-hydroxyacyl-ACP dehydratase (PfFabZ): A potential antimalarial target. In: 18th Symposium of the Protein-Society, AUG 14-18, 2004, San Diego, CA.

Sharma, Shailendra Kumar and Kapoor, Mili and Ramya, TNC and Kumar, Sanjay and Kumar, Gyanendra and Modak, Rahul and Sharma, Shilpi and Surolia, Namita and Surolia, Avadhesha (2003) Identification, Characterization, and Inhibition of Plasmodium falciparum \beta -Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ). In: The Journal Of Biological Chemistry, 278 (46). pp. 45661-45671.

Sharma, Shailendra Kumar and Kumar, Gyanendra and Kapoor, Mili and Surolia, Avadhesha (2008) Combined effect of epigallocatechin gallate and triclosan on enoyl-ACP reductase of Mycobacterium tuberculosis. In: Biochemical and Biophysical Research Communications, 368 (1). pp. 12-17.

Sharma, Shailendra Kumar and Modak, Rahul and Sharma, Shilpi and Sharma, Alok Kumar and Sarma, Siddhartha P and Surolia, Avadhesha and Surolia, Namita (2005) A novel approach for over-expression, characterization, and isotopic enrichment of a homogeneous species of acyl carrier protein from Plasmodium falciparum. In: Biochemical and Biophysical Research Communications, 330 (4). pp. 1019-1026.

Sharma, Shailendra Kumar and Parasuraman, Prasanna and Kumar, Gyanendra and Surolia, Namita and Surolia, Avadhesha (2007) Green Tea Catechins Potentiate Triclosan Binding to Enoyl-ACP Reductase from Plasmodium falciparum (PfENR). In: Journal of Medicinal Chemistry, 50 (4). pp. 765-775.

Sharma, Shalini and Bharadwaj, Satish and Surolia, Avadhesha and Podder, Sunil Kumar (1998) Evaluation of the stoichiometry and energetics of carbohydrate binding to Ricinus communis agglutinin: a calorimetric study. In: Biochemical Journal, 333 (3). pp. 539-542.

Sharma, Shilpi and Ramya, TNC and Surolia, Avadhesha and Surolia, Namita (2003) Triclosan as a Systemic Antibacterial Agent in a Mouse Model of Acute Bacterial Challenge. In: Antimicrobial Agents and Chemotherapy, 47 (12). pp. 3859-3866.

Sharma, Shilpi and Sharma, Shailendra Kumar and Modak, Rahul and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2007) Mass Spectrometry-Based Systems Approach for Identification of Inhibitors of Plasmodium falciparum Fatty Acid Synthase{triangledown}. In: Antimicrobial Agents and Chemotherapy, 51 (7). pp. 2552-2558.

Sharma, Shilpi and Sharma, Shailendra Kumar and Surolia, Namita and Surolia, Avadhesha (2009) Beta-Ketoacyl-ACP Synthase I/II from Plasmodium falciparum (PfFabB/F)-Is it B or F? In: IUBMB LIFE, 61 (6). pp. 658-662.

Sharma, Umender K and Chatterji, Dipankar (2006) Both regions 4.1 and 4.2 of E. coli ${\sigma}{^7{^0}}$ are together required for binding to bacteriophage T4 AsiA in vivo. In: Gene, 376 (1). pp. 133-143.

Sharma, Umender K and Chatterji, Dipankar (2008) Differential Mechanisms of Binding of Anti-Sigma Factors Escherichia coli Rsd and Bacteriophage T4 AsiA to E. coli RNA Polymerase Lead to Diverse Physiological Consequences. In: Journal of Bacteriology, 190 (10). pp. 3434-3443.

Sharma, VK and Nandeesha, H and Vinod, KV and Subramanian, SK and Sankar, DS and Rajendran, R (2019) Comparison of anthropometric, cardiovascular, autonomic, baroreflex sensitivity, aerobic fitness, inflammatory markers and oxidative stress parameters between first degree relatives of diabetes and controls. In: Diabetes and Metabolic Syndrome: Clinical Research and Reviews, 13 (1). pp. 652-658.

Sharma, Vijay Kumar and Chandrashekaran, Maroli K (1999) Precision of a Mammalian Circadian Clock. In: Naturwissenschaften, 86 (7). pp. 333-335.

Sharma, Vivek and Srinivas, VR and Adhikari, Pratima and Vijayan, M and Surolia, Avadhesha (1998) Molecular basis of recognition by Gal/GalNAc specific legume lectins: influence of Glu 129 on the specificity of peanut agglutinin (PNA) towards C2-substituents of galactose. In: Glycobiology, 8 (10). pp. 1007-1012.

Sharma, Vivek and Srinivas, VR and Surolia, Avadhesha (1996) Cloning and sequencing of winged bean (Psophocarpus tetragonolobus) basic agglutinin (WBA I): presence of second glycosylation site and its implications in quaternary structure. In: FEBS Letters, 389 (3). pp. 289-292.

Sharma, Vivek and Surolia, Avadhesha (1997) Analyses of carbohydrate recognition by legume lectins: Size of the combining site loops and their primary specificity. In: Journal of Molecular Biology, 267 (2). pp. 433-445.

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Singh, Amandeep (2017) Guardians of the mycobacterial genome: A review on DNA repair systems in Mycobacterium tuberculosis. In: Microbiology, 163 (12). pp. 1740-1758. ISSN 1350-0872

Singh, Amandeep and Arif, Sheikh Mohammad and San, Pau Biak and Varshney, Umesh and Vijayan, M (2018) Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2. In: JOURNAL OF STRUCTURAL BIOLOGY, 204 (3). pp. 449-456.

Singh, Amandeep and Bhagavat, Raghu and Vijayan, M and Chandra, Nagasuma (2016) A comparative analysis of the DNA recombination repair pathway in mycobacterial genomes. In: TUBERCULOSIS, 99 . pp. 109-119.

Singh, Amandeep and Varshney, Umesh and Vijayan, M (2016) Structure of the second Single Stranded DNA Binding protein (SSBb) from Mycobacterium smegmatis. In: JOURNAL OF STRUCTURAL BIOLOGY, 196 (3). pp. 448-454.

Singh, Amandeep and Vijayan, M and Nagaraju, Ganesh (2018) RecG(wed): A probable novel regulator in the resolution of branched DNA structures in mycobacteria. In: IUBMB LIFE, 70 (8). pp. 786-794.

Singh, Amandeep and Vijayan, M and Varshney, Umesh (2018) Distinct properties of a hypoxia specific paralog of single stranded DNA binding (SSB) protein in mycobacteria. In: TUBERCULOSIS, 108 . pp. 16-25.

Singh, Amit and Surolia, Avadhesha (2018) Tuberculosis: Today's researchestomorrow's therapies. In: IUBMB LIFE, 70 (9, SI). pp. 814-817.

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Singh, KK and Athira, PJ and Bhardwaj, N and Singh, DP and Watson, U and Saini, DK (2021) Acetylation of Response Regulator Protein MtrA in M. tuberculosis Regulates Its Repressor Activity. In: Frontiers in Microbiology, 11 .

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Singh, Parminder and Jindal, Bhavya and Surolia, Avadhesha and Panda, Dulal (2012) A Rhodanine Derivative CCR-11 Inhibits Bacterial Proliferation by Inhibiting the Assembly and GTPase Activity of FtsZ. In: BIOCHEMISTRY, 51 (27). pp. 5434-5442.

Singh, Pranveer and Sharma, Likhesh and Kulothungan, Rajendra S and Adkar, Bharat V and Prajapati, Ravindra Singh and Ali, Shaik Syed P and Krishnan, Beena and Varadarajan, Raghavan (2013) Effect of signal peptide on stability and folding of escherichia coli thioredoxin. In: PLOS One, 8 (5). e63442_1-e63442_14.

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Sinha, Sharmistha and Mitra, Nivedita and Kumar, Gyanendra and Bajaj, Kanika and Surolia, Avadhesha (2004) Unfolding Studies on Soybean Agglutinin and Concanavalin A Tetramers: A Comparative Account. In: Biophysics Journal, 88 . pp. 1300-1310.

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