Items where Subject is "Molecular Biophysics Unit"

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  - Molecular Biophysics Unit (3020)

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Iqbal, M and Balaram, P (1981) The 310 Helical Conformation of the Amino Terminal Decapeptide of Suzukacillin. 270 MHz 'H NMR Evidence for Eight Intramolecular Hydrogen Bonds. In: Journal Of The American Chemical Society, 103 (8). pp. 5548-5552.

Mandal, Amit Kumar and Bisht, Shveta and Bhat, Vijay S and Krishnaswamy, Patnam Rajagopalan and Balaram, Padmanabhan (2008) Electrospray mass spectrometric characterization of hemoglobin Q (Hb Q-India) and a double mutant hemoglobin S/D in clinical samples. In: Clinical Biochemistry, 41 (1-2). pp. 75-81.

Mohanty, Debasisa and Bansal, Manju (1994) Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Ppairing in $d(G_4T_nG_4)$. In: Biopolymers, 34 (9). pp. 1187-1211.

Nagaich, Akhilesh K. and Bhattacharyya, Dhanaqjay and Brahmachari, Samir K and Bansal, Manju (1994) CA\TG Sequence at the 5'end of Oligo(A)-tracts Strongly Modulates DNA Curvature. In: Journal of Biological Chemistry , 269 (10). 7824-7833. .

Paul, Ranajit and Balaram, P (1978) A fluorescent probe study of the solubilisation of cholesterol by biie salt-phospholipid micelles. In: Biochemical and Biophysical Research Communications, 81 (3). pp. 850-857.

Sathyapriya, R and Vijayabaskar, MS and Vishveshwara, Saraswathi (2008) Insights into Protein-DNA Interactions through Structure Network Analysis. In: PLoS Computational Biology, 4 (9). pp. 1-15.

Sekharudu, Y.Chandra and Rao, VSR (1985) Theoretical-Studies on the Modes of Binding of Some of the Beta-Glycosidically Linked Glucobioses to Concanavalin-A. In: International Journal of Biological Macromolecules, 7 (6). pp. 349-356.

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*, Madhusudan and Vijayan, M (1992) Additional binding sites in lysozyme. X-ray analysis of lysozyme complexes with bromophenol red and bromophenol blue. In: Protein Engineering, 5 (5). pp. 399-404.

A

Abbott, KL and Chaudhury, CS and Chandran, A and Vishveshwara, S and Dvorak, Z and Jiskrova, E and Poulikova, K and Vyhlidalova, B and Mani, S and Pondugula, SR (2019) Belinostat, at its clinically relevant concentrations, inhibits rifampicin-induced CYP3A4 and MDR1 gene expressions. In: Molecular Pharmacology, 95 (3). pp. 324-334.

Abhilash, Joseph and Geethanandan, K and Bharath, SR and Sabu, A and Sadasivan, C and Haridas, M (2015) The crystal structure of a lectin from Butea monosperma: Insight into its glycosylation and binding of ligands. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 72 . pp. 1376-1383.

Abhilash, Joseph and Geethanandan, K and Bharath, SR and Sadasivan, C and Haridas, M (2011) Crystallization and preliminary X-ray diffraction analysis of a galactose-specific lectin from the seeds of Butea monosperma. In: Acta Crystallographica Section F, 67 (Part 4). pp. 524-526.

Abhinav, KV and Samuel, Ebenezer and Vijayan, M (2016) Archeal lectins: An identification through a genomic search. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (1). pp. 21-30.

Abhinav, KV and Sharma, Alok and Vijayan, M (2013) Identification of mycobacterial lectins from genomic data. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 81 (4). pp. 644-657.

Abhinav, KV and Sharma, Kaushal and Surolia, A and Vijayan, Mamannamana (2017) Distortion of the Ligand Molecule as a Strategy for Modulating Binding Affinity: Further Studies Involving Complexes of Jacalin with beta-Substituted Disaccharides. In: IUBMB LIFE, 69 (2). pp. 72-78.

Abhinav, KV and Sharma, Kaushal and Surolia, Avadhesha and Vijayan, Mamannamana (2016) Effect of Linkage on the Location of Reducing and Nonreducing Sugars Bound to Jacalin. In: IUBMB LIFE, 68 (12). pp. 971-979.

Abhinav, KV and Sharma, Kaushal and Swaminathan, CP and Surolia, A and Vijayan, M (2015) Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (2). pp. 324-331.

Abhinav, KV and Vijayan, Mamannamana (2014) Structural diversity and ligand specificity of lectins. The Bangalore effort. In: PURE AND APPLIED CHEMISTRY, 86 (9). pp. 1335-1355.

Abraham, Ambily and Natraj, Usha and Karande, Anjali A and Gulati, Ashutosh and Murthy, Mathur RN and Murugesan, Sathyabalan and Mukunda, Pavithra and Savithri, Handanahal S (2016) Intracellular delivery of antibodies by chimeric Sesbania mosaic virus (SeMV) virus like particles. In: SCIENTIFIC REPORTS, 6 .

Acharya, Narottam and Talawar, Ramappa K and Saikrishnan, K and Vijayan, M and Varshney, Umesh (2003) Substitutions at tyrosine 66 of Escherichia coli uracil DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition. In: Nucleic Acids Research, 31 (24). pp. 7216-7226.

Acharya, S and Patanjali, SR and Sajjan, SU and Gopalakrishnan, B and Surolia, A (1990) Thermodynamic analysis of ligand binding to winged bean (Psophocarpus tetragonolobus) acidic agglutinin reveals its specificity for terminally monofucosylated H-reactive sugars. In: Journal of Biological Chemistry, 265 (20). pp. 11586-11594.

Adhada, ST and Sarma, SP (2024) Slow Conformational Exchange between Partially Folded and Near-Native States of Ubiquitin: Evidence for a Multistate Folding Model. In: Biochemistry, 63 (20). pp. 2565-2579.

Adhikari, Pratima and Sikder, Bachhawat K and Thomas, Celestine J and Ravishankar, R and Jeyaprakash, Arockia A and Sharma, Vivek and Vijayan, Mamanamana and Surolia, Avadhesha (2001) Mutational Analysis at Asn-41 in Peanut Agglutinin - A Residue Critical For The Binding Of The Tumor-Associated Thomsen-Friedenreich Antigen. In: The Journal of Biological Chemistry, 276 (44). pp. 40724-40729.

Adkar, Bharat V and Tripathi, Arti and Sahoo, Anusmita and Bajaj, Kanika and Goswami, Devrishi and Chakrabarti, Purbani and Swarnkar, Mohit K and Gokhale, Rajesh S and Varadarajan, Raghavan (2012) Protein Model Discrimination Using Mutational Sensitivity Derived from Deep Sequencing. In: Structure, 20 (2). pp. 371-381.

Agarwal, Garima and Mahajan, Swapnil and Srinivasan, Narayanaswamy and De Brevern, Alexandre G (2011) Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks. In: PLos One, 6 (3).

Agarwal, Garima and Rajavel, Malligarjunan and Gopal, Balasubramanian and Srinivasan, Narayanaswamy (2009) Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold. In: PLoS ONE, 4 (5).

Agarwal, S and Sharma, A and Bouzeyen, R and Deep, A and Sharma, H and Mangalaparthi, KK and Datta, KK and Kidwai, S and Gowda, H and Gowda, H and Varadarajan, R and Sharma, RD and Thakur, KG and Singh, R (2020) VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response. In: Science Advances, 6 (23).

Agarwalla, S and Gokhale, RS and Santi, DV and Balaram, P (1996) Covalent tethering of the dimer interface annuls aggregation in thymidylate synthase. In: Protein Science, 5 (2). pp. 270-277.

Agarwalla, S and Mellor, IR and Sansom, MSP and Karle, IL and Flippen-Anderson, JL and Uma, K and Krishna, K and Sukumar, M and Balaram, P (1992) Zervamicins, a structurally characterised peptide model for membrane ion channels. In: Biochemical and Biophysical Research Communications, 186 (1). pp. 8-15.

Agarwalla, Sanjay and Gokhale, Rajesh S and Santi, Daniel V and Balaram, P (1996) Covalent tethering of the dimer interface annuls aggregation in thymidylate synthase. In: Protein Science, 5 (2). pp. 270-277.

Aggarwal, P and Dasgupta, M and Joseph, AP and Chatterjee, N and Srinivasan, N and Nath, U (2010) Identification of Specific DNA Binding Residues in the TCP Family of Transcription Factors in Arabidopsis. In: Plant Cell Online, The, 22 (4). pp. 1174-1189.

Aggarwal, Vasudha and Kulothungan, Rajendra S and Balamurali, MM and Saranya, SR and Varadarajan, Raghavan and Ainavarapu, Sri Rama Koti (2011) Ligand-modulated Parallel Mechanical Unfolding Pathways of Maltose-binding Proteins. In: Journal of Biological Chemistry, 286 (32). pp. 28056-28065.

Aghera, NK and Prabha, J and Tandon, H and Chattopadhyay, G and Vishwanath, S and Srinivasan, N and Varadarajan, R (2020) Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase. In: Structure, 28 (5). 562-572.e4.

Aghera, Nilesh and Udgaonkar, Jayant B (2017) Stepwise Assembly of beta-Sheet Structure during the Folding of an SH3 Domain Revealed by a Pulsed Hydrogen Exchange Mass Spectrometry Study. In: BIOCHEMISTRY, 56 (29). pp. 3754-3769.

Ahmed, S and Bhasin, M and Manjunath, K and Varadarajan, R (2022) Prediction of Residue-specific Contributions to Binding and Thermal Stability Using Yeast Surface Display. In: Frontiers in Molecular Biosciences, 8 .

Ahmed, S and Chattopadhyay, G and Manjunath, K and Bhasin, M and Singh, N and Rasool, M and Das, S and Rana, V and Khan, N and Mitra, D and Asok, A and Singh, R and Varadarajan, R (2022) Combining cysteine scanning with chemical labeling to map protein-protein interactions and infer bound structure in an intrinsically disordered region. In: Frontiers in Molecular Biosciences, 9 .

Ahmed, S and Khan, MS and Gayathri, S and Singh, R and Kumar, S and Patel, UR and Malladi, SK and Rajmani, RS and van Vuren, PJ and Riddell, S and Goldie, S and Girish, N and Reddy, P and Upadhyaya, A and Pandey, S and Siddiqui, S and Tyagi, A and Jha, S and Pandey, R and Khatun, O and Narayan, R and Tripathi, S and McAuley, AJ and Singanallur, NB and Vasan, SS and Ringe, RP and Varadarajan, R (2021) A Stabilized, Monomeric, Receptor Binding Domain Elicits High-Titer Neutralizing Antibodies Against All SARS-CoV-2 Variants of Concern. In: Frontiers in Immunology, 12 .

Ahmed, S and Manjunath, K and Chattopadhyay, G and Varadarajan, R (2022) Identification of stabilizing point mutations through mutagenesis of destabilized protein libraries. In: Journal of Biological Chemistry, 298 (4).

Ahsan, N and Shariq, M and Surolia, A and Raj, R and Khan, MF and Kumar, P (2024) Multipronged regulation of autophagy and apoptosis: emerging role of TRIM proteins. In: Cellular and Molecular Biology Letters, 29 (1).

Ahsan, Nuzhat and Mishra, Satyendra and Jain, Manish Kumar and Surolia, Avadhesha and Gupta, Sarika (2015) Curcumin Pyrazole and its derivative (N-(3-Nitrophenylpyrazole) Curcumin inhibit aggregation, disrupt fibrils and modulate toxicity of Wild type and Mutant alpha-Synuclein. In: SCIENTIFIC REPORTS, 5 .

Ahsan, Nuzhat and Siddique, Ibrar Ahmed and Gupta, Sarika and Surolia, Avadhesha (2018) A routinely used protein staining dye acts as an inhibitor of wild type and mutant alpha-synuclein aggregation and modulator of neurotoxicity. In: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 143 . pp. 1174-1184.

Ahuja, Lalima Gagan and Gopal, Balasubramanian (2014) Bi-Domain Protein Tyrosine Phosphatases Reveal an Evolutionary Adaptation to Optimize Signal Transduction. In: ANTIOXIDANTS & REDOX SIGNALING, 20 (14). pp. 2141-2159.

Ajay Kumar, R and Vaze, Moreshwar B and Chandra, Nagasum and Vijayan, M and Muniyappa, K (1996) Functional characterization of the precursor and spliced forms of RecA protein of Mycobacterium tuberculosis. In: Biochemistry, 35 (6). 1793 -1802.

Akhade, Vijay Suresh and Arun, Gayatri and Donakonda, Sainitin and Rao, Manchanahalli R. Satyanarayana (2014) Genome wide chromatin occupancy of mrhl RNA and its role in gene regulation in mouse spermatogonial cells. In: RNA BIOLOGY, 11 (10). pp. 1262-1279.

Akkaya, Munir and Rawat, Mukul and Akkaya, Billur and Chaturvedi, Akanksha and Pena, Mirna and Miozzo, Pietro and Kim, Ann S and Pierce, Susan K (2016) B cells have bifurcated Toll-like receptor signaling allowing both inflammatory cytokine and type 1 interferon responses. In: JOURNAL OF IMMUNOLOGY, 196 (1).

Alam, MK and Bhuvaneshwari, RA and Sengupta, I (2024) 19F NMR relaxation of buried tryptophan side chains suggest anisotropic rotational diffusion of the protein RfaH. In: Journal of Biomolecular NMR .

Ali, Asfa and Bansal, Manju and Bhattacharya, Santanu (2015) Ligand 5,10,15,20-Tetra(N-methyl-4-pyridyl)porphine (TMPyP4) Prefers the Parallel Propeller-Type Human Telomeric G-Quadruplex DNA over Its Other Polymorphs. In: JOURNAL OF PHYSICAL CHEMISTRY B, 119 (1). pp. 5-14.

Ali, Rustam and Kumar, Sanjeev and Balaram, Hemalatha and Sarma, Siddhartha P (2012) H-1, C-13, N-15 assignment and secondary structure determination of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii. In: BIOMOLECULAR NMR ASSIGNMENTS, 6 (2). pp. 193-196.

Ali, Rustam and Kumar, Sanjeev and Balaram, Hemalatha and Sarma, Siddhartha P (2013) Solution nuclear magnetic resonance structure of the GATase subunit and structural Basis of the interaction between GATase and ATPPase subunits in a two-subunit-type GMPS from methanocaldococcus jannaschii. In: Biochemistry, 52 (25). pp. 4308-4323.

Alok, Sharma and Chandran, Divya and Singh, Desh D and Vijayan, M (2007) Multiplicity of carbohydrate-binding sites in \beta-prism fold lectins: occurrence and possible evolutionary implications. In: Journal of Biosciences, 32 (6). pp. 1089-1110.

Alurappa, Ramesha and Bojegowda, Madhusudhan Reddy Muthukurpalya and Kumar, Vijith and Mallesh, Naveen Kumar and Chowdappa, Srinivas (2014) Characterisation and bioactivity of oosporein produced by endophytic fungus Cochliobolus kusanoi isolated from Nerium oleander L. In: NATURAL PRODUCT RESEARCH, 28 (23). pp. 2217-2220.

Amarnath, S and Kawli, Trupti and Mohanty, Smita and Srinivasan, Narayanaswamy and Nanjundiah, Vidyanand (2012) Pleiotropic Roles of a Ribosomal Protein in Dictyostelium discoideum. In: PLOS ONE, 7 (2).

Amarnath Reddy, KK and Moi, S and Dolle, A and Hosamani, B and Krishnamurthy, K and Prakash, S and Raghothama, S and Gowd, KH (2020) Synthesis of Peptide Cysteine Dimedone Using Fmoc-Cys(Dmd)-OH: Glutathione Cysteine Dimedone as a Probe in Investigating the Sulfenic Acid Mediated Oxidation of Glutathione. In: Helvetica Chimica Acta, 103 (7).

Amaro, Rommie E and Bansal, Manju (2014) Theory and simulation: Tools for solving the insolvable. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 25 . IV-V.

Anachi, RB and Bansal, Manju and Easwaran, KRK and Namboodri, K and Gaber, BP (1995) Molecular Modeling Studies on Amphotericin B and its Complex with Phospholipid,. In: Journal of Biomolecular Structure & Dynamics, 12 (5). pp. 957-970.

Anachi, RB and Easwaran, KRK and Gaber, BP (1996) Structure and molecular basis of filipin sterol interaction. In: Biophysical Journal, 70 (2). TU192-TU192 .

Anamika, K and Srinivasan, N (2007) Comparative Kinomics of Plasmodium Organisms: Unity in Diversity. In: Protein and Peptide Letters, 14 (6). pp. 509-517.

Anamika, * and Srinivasan, N and Krupa, A (2005) A Genomic Perspective of Protein Kinases in Plasmodium falciparum. In: Proteins, 58 (1). pp. 180-189.

Anamika, K and Abhinandan, KR and Deshmukh, K and Srinivasan, N (2009) Classification of Nonenzymatic Homologues of Protein Kinases. In: Comparative and Functional Genomics, 2009 . pp. 1-7.

Anamika, K and Bhattacharya, A and Srinivasan, N (2008) Analysis of the protein kinome of Entamoeba histalytica. In: Proteins: Structure, Function, and Bioinformatics, 71 (2). pp. 995-1006.

Anamika, Krishanpal and Garnier, Nicolas and Srinivasan, Narayanaswamy (2009) Functional diversity of human protein kinase splice variants marks significant expansion of human kinome. In: BMC Genomics, 10 .

Anamika, Krishanpal and Martin, Juliette and Srinivasan, Narayanaswamy (2008) Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations. In: BMC Genomics, 9 . 625-1-625-16.

Anand, B and Gowri, VS and Srinivasan, N (2005) Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. In: Bioinformatics, 21 (12). pp. 2821-2826.

Anand, B and Namboori, S and Sandhya, S and Srinivasan, N (2004) Influence of protein structural similarities in adding value to genome data. In: Indian Journal of Biotechnology, 3 (4). pp. 473-485.

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Feâ��4S cluster and regulates Feâ��S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe–4S cluster and regulates Fe–S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, Prem T and Bhat, Abdul Wajid and Shouche, Yogesh S and Roy, Upal and Siddharth, Jay and Sarma, Siddhartha P (2006) Antimicrobial activity of marine bacteria associated with sponges from the waters off the coast of South East India. In: Microbiological Research, 161 (3). pp. 252-262.

Anand, TP (2005) Shed cloak of prejudice vis-a-vis women. In: Current Science (Bangalore), 89 (1). p. 8.

Ananda, K and Aravinda, S and Vasudev, Prema G and Raja, Muruga Poopathi K and Sivaramakrishnan, H and Nagarajan, K and Shamala, N and Balaram, P (2003) Stereochemistry of gabapentin and several derivatives: Solid state conformations and solution equilibria. In: Current Science, 85 (7). pp. 1002-1011.

Ananda, Kuppanna and Vasudev, Prema G and Sengupta, Anindita and Poopathi Raja, K Muruga and Shamala, Narayanaswamy and Balaram, Padmanabhan (2005) Polypeptide Helices in Hybrid Peptide Sequences. In: Journal of the American Chemical Society, 127 (47). pp. 16668-16674.

Ananthan, VS (1973) Thermal Denaturation Of Beta-Lactoglobulin-Alpha In Water. In: Current Science (Bangalore), 42 (24). pp. 845-846.

Ananthanarayanan, VS and Bandeker, J (1975) Prediction of beta-regions in globular proteins. In: Current Science, 44 (17). pp. 609-611.

Ananthanarayanan, VS and Hew, CL (1977) Synthetic polypeptide with antifreeze activity. In: Nature, 268 (5620). 560 -561.

Ananthanarayanan, SV and Soman, KV and Ramakrishnan, C (1987) A novel supersecondary structure in globular proteins comprising the collagen-like helix and ?-turn. In: Journal of Molecular Biology, 198 (4). pp. 705-709.

Ananthanarayanan, VS and Ahmad, F and Bigelow, CC (1977) The denaturation of β-lactoglobulin-A at pH 2. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 492 (1). pp. 194-203.

Ananthanarayanan, VS and Brahmachari, SK and Vijayan, M (1980) Beta-Turn Conformation of N-Acetyl-Pro-Gly-Phe-Oh in crystal and its relevance to collagen. In: Federation Proceedings, 39 (6). p. 1788.

Ananthanarayanan, VS and Brahmachari, Samir K and Pattabiramanc, N (1984) Proline-containing β-turns in peptides and proteins: Analysis of structural data on globular proteins. In: Archives of Biochemistry and Biophysics, 232, I (2). pp. 482-495.

Ananthanarayanan, VS and Brahmachari, Samir K and Rao, Rapaka S and Bhatnagar, Rajendra S (1976) Polypeptide Models of Collagen. Solution Properties of $(Gly-Pro-Sar)_n$, and $(Gly-Sar-Pro)_n$,. In: Biopolymers, 15 (4). pp. 707-716.

Ananthanarayanan, VS and Eswaran, KRK (1974) NMR Studies on Poly(S-Benzyl-L-Cysteine) in solution. In: Current Science, 43 (8). pp. 241-242.

Anantharam, Vellareddy and Patanjali, Sankhavaram R and Surolia, Avadesha (1985) A chitotetrose specific lectin from Luffa acutangula :Physico-chemical properties and the assignment of orientation of sugars in the lectin binding site. In: Journal of Biosciences, 8 (1-2). pp. 403-411.

Anbazhagan, Padmanabhan and Harijan, Rajesh K and Kiema, Tiila R and Janardan, Neelanjana and Murthy, MRN and Michels, Paul AM and Juffer, Andre H and Wierenga, Rik K (2014) Phylogenetic relationships and classification of thiolases and thiolase-like proteins of Mycobacterium tuberculosis and Mycobacterium smegmatis. In: TUBERCULOSIS, 94 (4). pp. 405-412.

Anirudhan, Arun and Narayanan, Rishikesh (2015) Analogous Synaptic Plasticity Profiles Emerge from Disparate Channel Combinations. In: JOURNAL OF NEUROSCIENCE, 35 (11). pp. 4691-4705.

Ankolekar, Shreya M and Sikdar, Sujit K (2015) Early postnatal exposure to lithium in vitro induces changes in AMPAR mEPSCs and vesicular recycling at hippocampal glutamatergic synapses. In: JOURNAL OF BIOSCIENCES, 40 (2). pp. 339-354.

Antony, Hiasindh Ashmi and Topno, Nishith Saurav and Gummadi, Sathyanarayana N and Sankar, Devanarayanan Siva and Krishna, Ramadas and Parija, Subhash Chandra (2019) In silico modeling of Plasmodium falciparum chloroquine resistance transporter protein and biochemical studies suggest its key contribution to chloroquine resistance. In: ACTA TROPICA, 189 . pp. 84-93.

Aparna, K and Balaram, P and Krishnamurthy, SS and Nethaji, M (1994) Peptide-lanthanide interactions. Crystal structure of a europium(III)-triglycine complex. In: International Journal of Peptide & Protein Research, 43 (1). pp. 19-22.

Aparna, K and Krishnamurthy, SS and Nethaji, M and Balaram, P (1994) Amino acid-lanthanide interactions. Crystal structures of lanthanide complexes of Alpha-amino isobutyric acid (Aib), [La2(Aib)4(H2O)8](ClO4)6 and [Pr2(Aib)4(H2O)8]Cl6·H2O. In: Polyhedron, 13 (21). pp. 2993-2997.

Aparna, K and Krishnamurthy, SS and Nethaji, M and Balaram, Padmanabhan (1997) Amino acid-lanthanide interactions, Part 2. The X-ray crystal structures of lanthanide and calcium complexes of 1-amino-cyclohexane-1-carboxylic acid (Acc6). In: Polyhedron, 16 (3). pp. 507-514.

Appadurai, R and Koneru, JK and Bonomi, M and Robustelli, P and Srivastava, A (2023) Clustering Heterogeneous Conformational Ensembles of Intrinsically Disordered Proteins with t-Distributed Stochastic Neighbor Embedding. In: Journal of Chemical Theory and Computation .

Appadurai, R and Nagesh, J and Srivastava, A (2021) High resolution ensemble description of metamorphic and intrinsically disordered proteins using an efficient hybrid parallel tempering scheme. In: Nature Communications, 12 (1).

Appadurai, Rajeswari and Uversky, Vladimir N and Srivastava, Anand (2019) The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins. In: JOURNAL OF MEMBRANE BIOLOGY, 252 (4-5, S). pp. 273-292.

Appukuttan, PS and Surolia, A and Bachawat, BK (1977) Isolation of two galactose-binding proteins from Ricinus communis by affinity chromatography. In: Indian J Biochem Biophys, 14 (4). pp. 382-384.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Aib Residues in Peptaibiotics and Synthetic Sequences: Analysis of Nonhelical Conformations. In: Chemistry & Biodiversity, 5 (7). pp. 1238-1262.

Aravinda, S and Shamala, N and Das, Chittaranjan and Balaram, P (2002) Structural Analysis of Peptide Helices Containing Centrally Positioned Lactic Acid Residues. In: Biopolymers, 64 (5). pp. 255-267.

Aravinda, S and Shamala, N and Pramanik, Animesh and Das, Chittaranjan and Balaram, P (2000) An Unusual C–H . . . O Hydrogen Bond Mediated Reversal of Polypeptide Chain Direction in a Synthetic Peptide Helix. In: Biochemical and Biophysical Research Communications, 273 (3). pp. 933-936.

Aravinda, S and Shamala, N and Pramanik, Animesh and Das, Chittaranjan and Balaram, P (2000) An unusual C-H center dot center dot center dot O hydrogen bond mediated reversal of polypeptide chain direction in a synthetic peptide helix. In: Biochemical and Biophysical Research Communications, 273 (3). pp. 933-936.

Aravinda, S and Shamala, N and Roy, Rituparna S and Balaram, P (2003) Non-protein amino acids in peptide design. In: Journal of Chemical Sciences, 115 (5 & 6). pp. 373-400.

Aravinda, Subrayashastry and Ananda, Kuppanna and Shamala, Narayanaswamy and Balaram, Padmanabhan (2003) \alpha-\gamma Hybrid Peptides that Contain the Conformationally Constrained Gabapentin Residue: Characterization of Mimetics of Chain Reversals. In: Chemistry - A European Journal, 9 (19). pp. 4789-4795.

Aravinda, Subrayashastry and Datta, Saumen and Shamala, Narayanaswamy and Balaram, Padmanabhan (2004) Hydrogen-Bond Lengths in Polypeptide Helices: No Evidence for Short Hydrogen Bonds. In: Angewandte Chemie International Edition, 43 (48). pp. 6728-6731.

Aravinda, Subrayashastry and Harini, Veldore Vidya and Shamala, Narayanaswamy and Das, Chittaranjan and Balaram, Padmanabhan (2004) Structure and Assembly of Designed ‚beta-Hairpin Peptides in Crystals as Models for beta-Sheet Aggregation. In: Biochemistry, 43 (7). pp. 1832-1846.

Aravinda, Subrayashastry and Raghavender, Upadhyayula S and Rai, Rajkishor and Harini, Veldore V and Shamala, Narayanaswamy and Balaram, Padmanabhan (2013) Analysis of designed beta-hairpin peptides: molecular conformation and packing in crystals. In: Organic & Biomolecular Chemistry, 11 (25). pp. 4220-4231.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2014) INDUCTION OF FOLDED STRUCTURES IN DESIGNED PEPTIDES USING CONFORMATIONALLY CONSTRAINED RESIDUES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 264-281.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Bandyopadhyay, Abhishek and Balaram, Padmanabhan (2003) Probing the Role of the C-H···O Hydrogen Bond Stabilized Polypeptide Chain Reversal at the C-terminus of Designed Peptide Helices. Structural Characterization of Three Decapeptides. In: Journal of the American Chemical Society, 125 (49). pp. 15065-15075.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Das, Chittaranjan and Sriranjini, Arumugam and Karle, Isabella L and Balaram, Padmanabhan (2003) Aromatic-Aromatic Interactions in Crystal Structures of Helical Peptide Scaffolds Containing Projecting Phenylalanine Residues. In: Journal of the American Chemical Society, 125 (18). pp. 5308-5315.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Desiraju, Shrilakshmi and Balaram, Padmanabhan (2002) A right handed peptide helix containing a central double D-amino acid segment. In: Chemical Communications (20). pp. 2454-2455.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Rajkishore, Rai and Gopi, Hosahudya N and Balaram, Padmanabhan (2002) A Crystalline beta-Hairpin Peptide Nucleated by a Type I’ Aib-D-Ala beta-Turn: Evidence for Cross-Strand Aromatic Interactions. In: Angewandte Chemie International Edition, 41 (20). pp. 3863-3865.

Aravinda, Subrayashastry and Shamala, Narayanaswamy and Bandyopadhyay, Abhishek and Balaram, Padmanabhan (1993) Probing the role of the C-H center dot center dot center dot O hydrogen bond stabilized polypeptide chain reversal at the C-terminus of designed peptide helices. Structural characterization of three decapeptides. In: Journal of the American Chemical Society, 125 (49). pp. 15065-15075.

Arif, SM and Geethanandan, K and Mishra, P and Surolia, A and Varshney, U and Vijayan, M (2015) Structural plasticity in Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) and its functional implications. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (7). pp. 1514-1527.

Arif, SM and Patil, AG and Varshney, U and Vijayan, M (2017) Biochemical and structural studies of Mycobacterium smegmatis MutT1, a sanitization enzyme with unusual modes of association. In: ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 73 (4). pp. 349-364.

Arif, SM and Patil, AG and Varshney, U and Vijayan, M (2012) Crystallization and preliminary X-ray studies of MutT1 (MSMEG_2390) from Mycobacterium smegmatis. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 68 (Part 1). pp. 1214-1216.

Arif, SM and Varshney, U and Vijayan, M (2017) Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1. In: JOURNAL OF STRUCTURAL BIOLOGY, 199 (3). pp. 165-176.

Arjunan, P and Ramamurthy, V and Venkatesan, K (1984) 4-Biphenylyl phenyl thioketone (I), C19H14S, and 1-naphthyl phenyl thioketone (II), C17H12S. In: Acta Crystallographica Section C, 40 . pp. 556-558.

Arjunan, P and Ramamurthy, V and Venkatesan, K (1984) Gas-crystal photoreaction: the structures of 4,4'-dimethoxy(thiobenzophenone) (I), C15H14O2S, and 4,4'-bis(dimethylamino)thiobenzophenone (II), C17H20N2S. In: Acta Crystallographica Section C, 40 (3). pp. 552-555.

Armstrong, PB and Jensen, Sottrup L and Ikai, A and Srimal, S and Quigley, JP (1994) Alpha 2M in the horseshoe crab. A structural and functional invertebrate homologue. In: Conference on Biology of Alpha-Macroglobulin, Its Receptor, and Related Proteins, OCT 11-14, 1993, Woods hole, MA, .

Aroli, S and Woo, E-J and Gopal, B and Varshney, U (2023) Mutational and structural analyses of UdgX: Insights into the active site pocket architecture and its evolution. In: Nucleic Acids Research, 51 (13). pp. 6554-6565.

Arora, Ashish and Chandra, Nagasuma R and Das, Amit and Gopal, Balasubramanian and Mande, Shekhar C and Prakash, Balaji and Ramachandran, Ravishankar and Sankaranarayanan, Rajan and Sekar, K and Suguna, Kaza and Tyagi, Anil K and Vijayan, Mamannamana (2011) Structural biology of Mycobacterium tuberculosis proteins: The Indian efforts. In: Tuberculosis, 91 (5, SI). pp. 456-468.

Arora, Gunjan and Kulshreshtha, Ankur and Arora, Kriti and Talwar, Puneet and Raj, Rishi and Grewal, Gurpreet and Sajid, Andaleeb and Kukreti, Ritushree (2017) Emerging Themes in Drug Resistance. [Book Chapter]

Arora, Smriti and Bhamidimarri, Satya Prathyusha and Bhattacharyya, Moitrayee and Govindan, Ashwin and Weber, Michael HW and Vishveshwara, Saraswathi and Varshney, Umesh (2013) Distinctive contributions of the ribosomal P-site elements m(2)G966, m(5)C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli. In: Nucleic Acids Research, 41 (9). pp. 4963-4975.

Arumugam, M and Bansal, M (2004) The role of BII nucleotides in C form DNA. In: 48th Annual Meeting of the Biophysical Society, FEB 14-18, 2004, Baltimore, MD.

Ash, Dipankar and Subramanian, Manikandan and Surolia, Avadhesha and Shaha, Chandrima (2015) Nitric oxide is the key mediator of death induced by fisetin in human acute monocytic leukemia cells. In: AMERICAN JOURNAL OF CANCER RESEARCH, 5 (2). 481-U421.

Ashhad, Sufyan and Johnston, Daniel and Narayanan, Rishikesh (2015) Activation of InsP(3) receptors is sufficient for inducing graded intrinsic plasticity in rat hippocampal pyramidal neurons. In: JOURNAL OF NEUROPHYSIOLOGY, 113 (7). pp. 2002-2013.

Ashhad, Sufyan and Narayanan, Rishikesh (2016) Active dendrites regulate the impact of gliotransmission on rat hippocampal pyramidal neurons. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113 (23). E3280-E3289.

Ashhad, Sufyan and Narayanan, Rishikesh (2013) Quantitative interactions between the A-type K+ current and inositol trisphosphate receptors regulate intraneuronal Ca2+ waves and synaptic plasticity. In: JOURNAL OF PHYSIOLOGY, 591 (7). pp. 1645-1669.

Ashhad, Sufyan and Narayanan, Rishikesh (2019) Stores, Channels, Glue, and Trees: Active Glial and Active Dendritic Physiology. In: MOLECULAR NEUROBIOLOGY, 56 (3). pp. 2278-2299.

Ashwini, Hinge S and Lalita, Limaye S and Avadhesha, Surolia and Vaijayanti, Kale P (2010) In vitro protection of umbilical cord blood–derived primitive hematopoietic stem progenitor cell pool by mannose-specific lectins via antioxidant mechanisms. In: Transfusion .

Awasthi, Satish Kumar and Raghothama, S and Balaram, P (1995) A Designed beta-Hairpin Peptide. In: Biochemical and Biophysical Research Communications, 216 (1). pp. 375-381.

Awasthi, Satish Kumar and Raghothama, Srinivasa Rao and Balaram, Padmanabhan (1996) Conformational variability in short acyclic peptides. Stabilization of multiple beta-turn structures in organic solvents. In: Journal of the Chemical Society, Perkin Transactions 2 (12). pp. 2701-2706.

Awasthi, Satish Kumar and Shankaramma, SC and Raghothama, S and Balaram, P (2001) Solvent-induced Beta-hairpin to helix conformational transition in a designed peptide. In: Biopolymers, 58 (5). pp. 465-476.

B

Babbitt, Patricia C and Bagos, Pantelis G and Bairoch, Amos and Bateman, Alex and Chatonnet, Arnaud and Chen, Mark Jinan and Craik, David J and Finn, Robert D and Gloriam, David and Haft, Daniel H and Henrissat, Bernard and Holliday, Gemma L and Isberg, Vignir and Kaas, Quentin and Landsman, David and Lenfant, Nicolas and Manning, Gerard and Nagano, Nozomi and Srinivasan, Narayanaswamy and O'Donovan, Claire and Pruitt, Kim D and Sowdhamini, Ramanathan and Rawlings, Neil D and Saier, Milton H and Sharman, Joanna L and Spedding, Michael and Tsirigos, Konstantinos D. and Vastermark, Ake and Vriend, Gerrit (2015) Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. In: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION .

Babu, Ponnusamy and Sangeetha, Neralagatta M and Maitra, Uday (2006) Supramolecular chemistry of bile acid derivatives: Formation of gels. In: Indo-French Symposium on Fibrillar Networks as Advanced Materials, SEP 21-23, 2005, Inst Charles Sadron, Strasbourg, FRANCE.

Babu, AM and Weakley, TJR and Murthy, MRN (1998) Crystal structure of 1,4-butanediammonium bis (hydrogenoxalate) monohydrate, C8H18N2O9. In: Zeitschrift für Kristallographie - New Crystal Structures, 213 (2). pp. 321-322.

Babu, AM and Weakley, TJR and Murthy, MRN (1997) Extended conformation of putrescine occurring on a center of symmetry in its 1:2 complex with malonic acid. In: Acta Crystallographica Section C-Crystal Structure Communications, 53 (Part 3). pp. 365-367.

Babu, AS and Puri, KD and Gowda, TV (1995) Primary structure of a cytotoxin-like basic protein from Naja naja naja (Indian Cobra) venom. In: International Journal of Peptide & Protein Research, 46 (1). pp. 69-72.

Babu, Madan M and Singh, Kumar S and Balaram, P (2002) A C-H center dot center dot center dot O hydrogen bond stabilized polypeptide chain reversal motif at the C terminus of helices in proteins. In: Journal of Molecular Biology, 322 (4). 871-880 .

Babu, Madan M and Singh, Kumar S and Balaram, P (2002) A C–H...O, Hydrogen Bond Stabilized Polypeptide Chain Reversal Motif at the C Terminus of Helices in Proteins. In: Journal of Molecular Biology, 322 (4). pp. 871-880.

Bachhawat, Kiran and Kapoor, Mili and Dam, Tarun K and Surolia, Avadhesha (2001) The Reversible Two-State Unfolding of a Monocot Mannose-Binding Lectin from Garlic Bulbs Reveals the Dominant Role of the Dimeric Interface in Its Stabilization. In: Biochemistry, 40 (24). pp. 7291-7300.

Bachhawat, Kiran and Thomas, Celestine J and Amutha, B and Krishnasastry, MV and Khan, MI and Surolia, Avadhesha (2001) On the Stringent Requirement of Mannosyl Substitution in Mannooligosaccharides for the Recognition by Garlic (Allium sativum) Lectin. In: The Journal of Biological Chemistry, 276 (8). pp. 5541-5546.

Bachhawat, Kiran and Thomas, Celestine J and Surolia, Namita and Surolia, Avadhesha (2000) Interaction of Chloroquine and Its Analogues with Heme: An Isothermal Titration Calorimetric Study. In: Biochemical and Biophysical Research Communications, 276 (3). pp. 1075-1079.

Bafana, Amit and Khan, Farha and Suguna, Kaza (2017) Structural and functional characterization of mercuric reductase from Lysinibacillus sphaericus strain G1. In: BIOMETALS, 30 (5). pp. 809-819.

Bag, K and Pal, AK and Basu, S and Singla, M and Sarkar, B and Chatterji, D and Maiti, PK and Ghosh, A and Jayaraman, N (2023) C-4-Modified Isotetrones Prevent Biofilm Growth and Persister Cell Resuscitation in Mycobacterium smegmatis. In: ACS Omega, 8 (23). pp. 20513-20523.

Bagaria, Shradha and Ponnalagu, Devasena and Bisht, Shveta and Karande, Anjali A (2013) Mechanistic Insights into the Neutralization of Cytotoxic Abrin by the Monoclonal Antibody D6F10. In: PLOS ONE, 8 (7).

Bagga, Rajesh and Ramesh, N and Brahmachari, Samir K (1990) Supercoil-induced unusual DNA sturctures as transcriptional block. In: Nucleic Acids Research, 18 (11). pp. 3363-3369.

Bagga, R and Brahmachari, SK (1993) Polypurine-polypyrimidine sequences adopt unwound structure in pBR322 form V DNA as probed by single-hit analysis of HpaII sites. In: Journal of Biomolecular Structure & Dynamics, 10 (5). pp. 879-890.

Bairagya, Hridoy R and Bansal, Manju (2016) New insight into the architecture of oxy-anion pocket in unliganded conformation of GAT domains: A MD-simulation study. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (3). pp. 360-373.

Bajaj, Kanika and Chakrabarti, Purbani and Varadarajan, Raghavan (2005) Mutagenesis-based definitions and probes of residue burial in proteins. In: Proceedings of The National Academy of Sciences of The United States of America, 102 (45). pp. 16221-16226.

Bajaj, Kanika and Chakshumathi, Ghadiyaram and Bachhawat-Sikder, Kiran and Surolia, Avadhesha and Varadarajan, Raghavan (2004) Thermodynamic characterization of monomeric and dimeric forms of CcdB (controller of cell division or death B protein). In: Biochemical Journal, 380 (2). 409–417.

Bajaj, Kanika and Dewan, Pooja C and Chakrabarti, Purbani and Goswami, Devrishi and Barua, Bipasha and Baliga, Chetana and Varadarajan, Raghavan (2008) Structural Correlates of the Temperature Sensitive Phenotype Derived from Saturation Mutagenesis Studies of CcdB. In: Biochemistry, 47 (49). pp. 12964-12973.

Bajaj, Kanika and Madhusudhan, MS and Adkar, Bharat V and Chakrabarti, Purbani and Ramakrishnan, C and Sali, Andrej and Varadarajan, Raghavan (2007) Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability. In: PLoS Computational Biology, 3 (12). pp. 2465-2475.

Bajaj, P and Bhasin, M and Varadarajan, R (2023) Molecular bases for strong phenotypic effects of single synonymous codon substitutions in the E. coli ccdB toxin gene. In: BMC Genomics, 24 (1).

Bajaj, P and Manjunath, K and Varadarajan, R (2022) Structural and functional determinants inferred from deep mutational scans. In: Protein Science, 31 (7).

Bake, Edward N and Blundell, Tom L and Vijayan, Mamannamana and Dodson, Eleanor and Dodson, Guy and Gilliland, Gary L and Sussman, Joel L (1996) Archival journal requirements for data deposition. In: Biophysical Journal, 70 (6). p. 2994.

Baker, EN and Blundell, TL and Vijayan, M and Dodson, E and Dodson, G and Gilliland, GI and Sussman, JL (1996) Crystallographic data deposition. In: Nature, 379 (6562 ). p. 202.

Baker, EN and Bluntell, TL and Vijayan, M and Dodson, E and Dodson, G and Gilliland, GL and Sussman, JL (1996) Publication of macromolecular crystal structures. In: FEBS Letters, 380 (3). 302-302 .

Baker, Edward N and Blundell, Thomas L and Cutfield, John F and Cutfield, Susan M and Dodson, Eleanor J and Dodson, Guy G and Hodgkin , Dorothy Crowfoot M and Hubbard, Roderick E and Isaacs, Neil W and Reynolds, Colin D and Sakabe, Kiwako and Sakabe, Norioshi and Vijayan, Numminate M (1988) THE STRUCTURE OF 2Zn PIG INSULIN CRYSTALS AT 1.5A RESOLUTION. In: Philosophical Transactions of the Royal Society B: Biological Sciences, 319 (1195). 369-&.

Baker, Edward N and Blundell, Tom L and Vijayan, Mamannamana and Dodson, Eleanor and Dodson, Guy and Gilliland, Gary L and Sussman, Joel L (1996) Deposition of macromolecular data. In: Acta Crystallographica Section D, 52 (part 3). p. 609.

Bakshi, Arindam and Vishnu Vardhan, GP and Hema, M and Murthy, MRN and Savithri, HS (2017) Structural and Functional Characterization of Sesbania Mosaic Virus. [Book Chapter]

Balagurumoorthy, P and Brahmachari, Samir K and Mohanty, Debasisa and Bansal, Manju and Sasisekharan, V (1992) Hairpin and parallel quartet structures for telomeric sequences. In: Nucleic Acids Research, 20 (15). pp. 4061-4067.

Balagurumoorthy, P and Brahmachari, SK (1995) Intraloop and Interloop Interactions in the Folded-G Quartet Structure of Oxytricha Telomeric Sesquence. In: Indian Journal of Biochemistry & Biophysics, 32 (6). 385-390 .

Balagurumoorthy, P and Brahmachari, SK (1994) Structure and stability of human telomeric sequence. In: Journal of Biological Chemistry, 269 (34). pp. 21858-21869.

Balagurusamy, VSK and Baranidharan, S and Gopal, ESR and Sasisekharan, V (1990) Diffraction properties of one-dimensional finite size Fibonacci quasilattice. In: Pramana, 34 (6). pp. 525-536.

Balagurusamy, VSK and Baranidharan, S and Gopal, ESR and Sasisekharan, V (1991) Response to the “comments on fourier transforms of truncated quasilattices”. In: Pramana - Journal of Physics, 36 (4). C443 -C444.

Balaji, S and Srinivasan, N (2007) Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution. In: Journal of Biosciences, 32 (1). pp. 83-96.

Balaji, PV and Rao, VSR and Saenger, W (1990) Computer Modeling Studies of Ribonuclease T,-Guanosine Monophosphate Complexes. In: Biopolymers, 30 (3-4). pp. 257-272.

Balaji, PV and Saenger, W and Rao, VS (1993) Computer modeling studies on the binding of 2',5'-linked dinucleoside phosphates to ribonuclease T1-influence of subsite interactions on the substrate specificity. In: Journal of Biomolecular Structure & Dynamics, 10 (5). pp. 891-903.

Balaji, PV and Saenger, W and Rao, VS (1992) Modes of binding of 2'-AMP to RNase T1. A computer modeling study. In: Journal of Biomolecular Structure & Dynamics, 9 (5). pp. 959-969.

Balaji, PV and Saenger, W and Rao, VSR (1991) Computer modelling studies on the mechanism of action of ribonuclease T1. In: Journal of Biomolecular Structure & Dynamics, 9 (2). pp. 215-231.

Balaji, PV and Saenger, W and Rao, VSR (1991) Modes of binding of guanosine monophosphates to ribonuclease T1 - A computer modelling study. In: Current Science (Bangalore), 60 (6). pp. 363-373.

Balaji, S and Aruna, S and Srinivasan, N (2003) Tolerance to the Substitution of Buried Apolar Residues by Charged Residues in the Homologous Protein Structures. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 783-791.

Balaji, S and Srinivasan, N (2001) Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins. In: Protein Engineering, 14 (4). pp. 219-226.

Balaji, S and Sujatha, S and Chetan Kumar, Sai S and Srinivasan, N (2001) PALI—a database of Phylogeny and ALIgnment of homologous protein structures. In: Nucleic Acids Research, 29 (1). pp. 61-65.

Balaji, VN (1981) Energy calculations on helical polypeptides: Structure of polyglycine II. In: International Journal of Quantum Chemistry, 20 (2). pp. 347-356.

Balaji, VN and Rao, Jagannatha M and Rao, Shashidhar N and Dietrich, Stephen W and Sasisekharan, V (1986) Geometry Of Proline And Hydroxyproline .1. An Analysis Of X-Ray Crystal-Structure Data. In: Biochemical and Biophysical Research Communications, 140 (3). 895 -900.

Balakrishnan, Rajini A and Easwaran, KRK (1993) Conformation of polyene antibiotic, filipin III: CD and proton NMR studies. In: Journal of Biomolecular Structure & Dynamics, 11 (2). pp. 417-428.

Balakrishnan, Rajini A and Easwaran, KRK (1993) CD and NMR studies on the aggregation of amphotericin-B in solution. In: Biochimica et Biophysica Acta (BBA) - Biomembranes, 1148 (2). pp. 269-277.

Balakrishnan, Rajini A and Easwaran, KRK (1993) Lipid-amphotericin B complex structure in solution: A possible first step in the aggregation process in cell membranes. In: Biochemistry, 32 (15). 4139-4144 .

Balakrishnan, Swati and Sarma, Siddhartha P (2017) Engineering Aromatic-Aromatic Interactions To Nucleate Folding in Intrinsically Disordered Regions of Proteins. In: BIOCHEMISTRY, 56 (33). pp. 4346-4359.

Balakrishnan, Veena and Varma, Saaket and Chatterji, Dipankar (2001) Piperine augments transcription inhibitory activity of rifampicin by severalfold in Mycobacterium smegmatis. In: Current Science, 80 (10). pp. 1302-1305.

Balamurugan, K and Bjorkhaug, L and Mahajan, S and Kanthimathi, S and Njolstad, PR and Srinivasan, N and Mohan, V and Radha, V (2016) Structure-function studies of HNF1A (MODY3) gene mutations in South Indian patients with monogenic diabetes. In: CLINICAL GENETICS, 90 (6). pp. 486-495.

Balaram, P (1999) Scientific publishing in the third world. In: Indian Academy of Sciences, 76 (2).

Balaram, H and Uma, K and Balaram, P (1990) Synthetic Peptide Models for Protein Secondary Structures - Beta-Sheet Formation in Acylic Cystine Peptides. In: International Journal of Peptide & Protein Research, 35 (6). 495-500 .

Balaram, Hemalatha and Prasad, B V Venkataram and Balaram, Padmanabhan (1982) Conformational transitions in a Pro-Pro peptide on dissolution of single crystals. In: Biochemical and Biophysical Research Communications, 109 (3). pp. 825-831.

Balaram, Hemalatha and Prasad, Venkataram BV and Balaram, P (1983) Multiple Conformational States of a Pro-Pro Peptide. Solid-State and Solution Conformations of Boc-Aib-Pro-Pro-NHMe. In: Journal of the American Chemical Society, 105 (12). pp. 4065-4071.

Balaram, Hemalatha and Sukumar, M and Balaram, P (1986) Stereochemistry of \alpha-Aminoisobutyric Acid Peptides in Solution: Conformations of Decapeptides with a Central Triplet of Contiguous L-Amino Acids. In: Biopolymers, 25 (11). pp. 2209-2223.

Balaram, P (2004) Anil Kumar Lala (1950–2004). In: Current Science, 87 (3). p. 396.

Balaram, P (2004) Anil Lala (1950–2004). In: Protein Science, 13 (10). pp. 2571-2572.

Balaram, P (1995) Awakening At The Academy. In: Current Science (Bangalore), 68 (3). p. 233.

Balaram, P (1991) Bacterial enterotoxins:a structural view. In: Current Science (Bangalore), 61 (7). pp. 437-439.

Balaram, P (1990) The Bamboo Plant, Indian Journals and Government Orders. In: Current Science (Bangalore), 59 (7). pp. 348-349.

Balaram, P (1999) Blue sky research. In: Current Science, 76 (1). pp. 5-6.

Balaram, P (2005) Budget Reflections. In: Current Science, 88 (5). pp. 673-674.

Balaram, P (1999) De novo design: backbone conformational constraints in nucleating helices and beta-hairpins. In: Journal of Peptide Research, 54 (3). pp. 195-199.

Balaram, P (1993) The Design and Construction of Synthetic Protein Mimics. In: INTERNATIONAL SYMP ON ENZYMES IN ORGANIC SYNTHESIS, JAN 06-09, 1992 , NEW DELHI, INDIA.

Balaram, P (2014) Forward. In: Journal of the Indian Institute of Science, 94 (1).

Balaram, P (1990) Fundamental scientific research. In: Current Science (Bangalore), 59 (1). p. 64.

Balaram, P (1990) G. N. Ramachandran and beginnings of structural molecular biology in India. In: Current Science (Bangalore), 59 (17-18). pp. 811-812.

Balaram, P (2011) The Gathering Storm: A Case for Science. In: Current Science, 100 (3). pp. 443-444.

Balaram, P (2021) Gopinath Kartha and the birth of chemical crystallography in India. In: Current Science, 121 (3). pp. 441-447.

Balaram, P (1990) Historical Note: Robert Koch, Calcutta and the Comma Bacillus. In: Current Science (Bangalore), 59 (13-14). pp. 697-699.

Balaram, P (2011) IIT, MIT and the Evolution of Institutions. In: Current Science, 100 (5). pp. 599-600.

Balaram, P (2009) The Indian Institute of Science: Reflections on a Century. In: Current science, 96 (10). pp. 1404-1411.

Balaram, P (1994) Indian science. In: Current Science (Bangalore), 67 (7). 502-503 .

Balaram, P (2013) Open Access: Tearing Down Barriers. In: CURRENT SCIENCE, 104 (4). pp. 403-404.

Balaram, P (1984) Peptides as bioorganic models. In: Journal of Chemical sciences, 93, Nu (4). pp. 703-717.

Balaram, P (1992) Plant virus structures. A touch of local colour. In: Current Science (Bangalore), 63 (11). p. 655.

Balaram, P (1985) Proton NMR studies of peptide conformations. In: Proceedings of Indian Academy of Sciences, Chemical Sciences, 95 (1-2). pp. 21-38.

Balaram, P (1999) Research guides and students. In: Current Science, 76 (3). pp. 261-262.

Balaram, P (2010) Scientific Publishing: Eroding Trust. In: Curent Science, 98 (2). pp. 5-6.

Balaram, P (1981) Structural studies on the alamethicin transmembrane channel. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 23.

Balaram, P (1990) The lac repressor and a feeling of déjà vu. In: Current Science (Bangalore), 59 (7). p. 345.

Balaram, P and Bothner, AA and Dadok, J (1972) Negative nuclear Overhauser effects as probes of macromolecular structure. In: Journal of the American Chemical Society., 94 (11). pp. 4015-4017.

Balaram, P and Bothner-By, AA and Breslow, E (1972) Localization of tyrosine at the binding site of neurophysin II by negative nuclear Overhauser effects. In: Journal of the American Chemical Society, 94 (11). p. 4017.

Balaram, P and Krishna, K and Sukumar, M and Mellor, IR and Sansom, Mark SP (1992) The properties of ion channels formed by zervamicins. In: European Biophysics Journal, 21 (2). pp. 117-128.

Balaram, P and Ramaseshan, S (1991) Coming of age in biotechnology. In: Current Science (Bangalore), 60 (9-10). p. 509.

Balaram, P and Ramaseshan, S (1995) Wearing Colored Glasses and Sitting on the Fence. In: Current Science (Bangalore), 68 (12). p. 1164.

Balaram, Padmanabhan (2010) Hybrid Polypeptides: Gabapentin as a Stereochemically Constrained gamma-Amino Acid Residue. In: Biopolymers, 94 (6, Sp.). pp. 733-741.

Balaram, Padmanabhan (1992) Non-standard amino acids in peptide design and protein engineering. In: Current Opinion in Structural Biology, 2 (6). pp. 845-851.

Balaram, Padmanabhan (1990) Solvophobic effects drive self-assembly and neutral molecule recognition in organic media g Cram's cavitands, Limaye and Rasayanam. In: Current Science (Bangalore), 59 (8). pp. 398-400.

Balaram, Padmanabhan (1992) The design and construction of synthetic protein mimics. In: International Symposium on Enzymes in Organic Synthesis, 6–9 January 1992, New Delhi, India.

Balaram, Padmanabhan and Bothner-By, AA and Breslow, E (1973) Nuclear magnetic resonance studies of the interaction of peptides and hormones with bovine Neurophysin-II. In: Biochemistry, 12 (23). 4695-4704.

Balaram, Padmanabhan and Krishnan, Kozhalmannom Subramaniasastry (2005) A novel conotoxin modulating sodium channels. Patent Number(s) WO 2005030801 A1. Patent Assignee(s) National Centre for Biological Sciences.

Balaram , P (1994) Biology and pauling,linus. In: Current science (Bangalore), 67 (5). 409 -410 .

Balasubramanian, S and Maharana, S and Srivastava, A (2023) â��Boundary residuesâ�� between the folded RNA recognition motif and disordered RGG domains are critical for FUSâ��RNA binding. In: Journal of Biological Chemistry, 299 (12).

Balasubramanian, SV and Easwaran, KRK (1989) Aggregation of calcium ionophore (A23187) in phospholipid vesicles. In: Biochemical and Biophysical Research Communications, 158 (3). pp. 891-897.

Balasubramanian, SV and Sikdar, SK and Easwaran, KRK (1992) Bilayers containing calcium ionophore A23187 form channels. In: Biochemical and Biophysical Research Communications, 189 (2). pp. 1038-1042.

Baliga, C and Selmke, B and Worobiew, I and Borbat, P and Sarma, SP and Trommer, WE and Varadarajan, R and Aghera, N (2019) CcdB at pH 4 Forms a Partially Unfolded State with a Dry Core. In: Biophysical Journal, 116 (5). pp. 807-817.

Baliga, Chetana and Majhi, Sandipan and Mondal, Kajari and Bhattacharjee, Antara and VijayRaghavan, K and Varadarajan, Raghavan (2016) Rational elicitation of cold-sensitive phenotypes. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113 (18). E2506-E2515.

Baliga, Chetana and Varadarajan, Raghavan and Aghera, Nilesh (2016) Homodimeric Escherichia coli Toxin CcdB (Controller of Cell Division or Death B Protein) Folds via Parallel Pathways. In: BIOCHEMISTRY, 55 (43). pp. 6019-6031.

Banavar, Jayanth R and Cieplak, Marek and Maritan, Amos and Nadig, Gautham and Seno, Flavio (1998) Structure-based design of model proteins. In: Proteins: Structure, Function, and Genetics, 31 (1). pp. 10-20.

Banavar, Jayanth R and Vishveshwara, Saraswathi (2013) Protein structure and folding - simplicity within complexity. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 31 (9, SI). pp. 973-975.

Bandekar, Jagdeesh (1973) Intensity of a Raman Overtone Band. In: Spectroscopy Letters, 6 (11). 675- 679.

Bandyopadhyay, Debarati and Murthy, Mathur R N and Balaram, Hemalatha and Balaram, Padmanabhan (2015) Probing the role of highly conserved residues in triosephosphate isomerase-analysis of site specific mutants at positions 64 and 75 in the Plasmodial enzyme. In: FEBS JOURNAL, 282 (20). pp. 3863-3882.

Bandyopadhyay, Debarati and Prakash, Sunita and Gupta, Kallol and Balaram, Padmanabhan (2016) Mass spectrometric analysis of dimer-disrupting mutations in Plasmodium triosephosphate isomerase. In: ANALYTICAL BIOCHEMISTRY, 500 . pp. 45-50.

Bandyopadhyay, P and Pramanick, I and Biswas, R and Sabarinath, PS and Sreedharan, S and Singh, S and Rajmani, RS and Laxman, S and Dutta, S and Singh, A (2022) S-Adenosylmethionine–responsive cystathionine β-synthase modulates sulfur metabolism and redox balance in Mycobacterium tuberculosis. In: Science Advances, 8 (25).

Banerjee, Probal and lyengar, Raghu R and Ayyer, Jayalekshmy and Bhattacharyya, PK (1984) Carbonation of Phenol: A Novel Reaction Involving Enzyme Model Catalysis. In: Current Science, 53 (23). pp. 1226-1228.

Banerjee, A and Balaram, P (1997) Stereochemistry of peptides and polypeptides containing omega amino acids. In: Current science, 73 (12). pp. 1067-1077.

Banerjee, A and Ghatak, S and Sikdar, S (2013) Lactate increases trek channel activity in CA1 stratum radiatum astrocytes. In: Glia, 61 (1). S127-S127.

Banerjee, Aditi and Ghatak, Swagata and Sikdar, Sujit Kumar (2016) L-Lactate mediates neuroprotection against ischaemia by increasing TREK1 channel expression in rat hippocampal astrocytes in vitro. In: JOURNAL OF NEUROCHEMISTRY, 138 (2). pp. 265-281.

Banerjee, Arindam and Datta, S and Pramanik, Animesh and Shamala, N and Balaram, P (1996) Heterogeneity and Stability of Helical Conformations in Peptides: Crystallographic and NMR Studies of a Model Heptapeptide. In: Journal of the American Chemical Society, 118 (40). pp. 9477-9483.

Banerjee, Arindam and Pramanik, Animesh and Bhattacharjya, Surajit and Balaram, P (1996) Omega Amino Acids in Peptide Design: Incorporation into Helices. In: Biopolymers, 39 (6). pp. 769-777.

Banerjee, Arindam and Raghothama, S and Balaram, P (1997) Peptide design. Helix–helix motifs in synthetic sequences. In: Journal of Chemical Society, Perkin Transactions 2 (10). pp. 2087-2094.

Banerjee, Arindam and Raghothama, Srinivasa Rao and Karle, Isabella L and Balaram, Padmanabhan (1996) Ambidextrous Molecules: Cylindrical Peptide Structures Formed by Fusing Left- and Right-Handed Helices. In: Biopolymers, 39 (3). pp. 279-285.

Banerjee, Mithu and Poddar, Asim and Mitra, Gopa and Surolia, Avadhesha and Owa, Takashi and Bhattacharyya, Bhabatarak (2005) Sulfonamide Drugs Binding to the Colchicine Site of Tubulin: Thermodynamic Analysis of the Drug-Tubulin Interactions by Isothermal Titration Calorimetry. In: Journal Of Medicinal Chemistry, 48 (2). pp. 547-555.

Banerjee, Mousumi and Balaram, Hemalatha and Balaram, Padmanabhan (2009) Structural effects of a dimer interface mutation on catalytic activity of triosephosphate isomerase.The role of conserved residues and complementary mutations. In: FEBS Journal, 276 (15). pp. 4169-4183.

Banerjee, Mousumi and Balaram, Hemalatha and Joshi, NV and Balaram, P (2011) Engineered dimer interface mutants of triosephosphate isomerase: the role of inter-subunit interactions in enzyme function and stability. In: Protein Engineering Design and Selection, 24 (5). pp. 463-472.

Banerjee, R and Das, K and Ravishankar, R and Suguna, K and Surolia, A and Vijayan, M (1996) Conformation, Protein-Carbohydrate Interactions and a Novel Subunit Association in the Refined Structure of Peanut Lectin-Lactose Complex. In: Journal of Molecular Biology, 259 . pp. 281-296.

Banerjee, R and Mande, SC and Ganesh, V and Das, K and Dhanaraj, V and Mahanta, SK and Suguna, K and Surolia, Avadhesha and Vijayan, M (1994) Crystal structure of peanut lectin, a protein with an unusual quaternary structure. In: Proc Natl Acad Sci Unit States Am, 91 (1). pp. 227-231.

Banerjee, Rahul and Das, Kalyan and Ganesh, Venkatapathy and Banerjee, Probal and Surolia, Avadhesha and Vijayan, Mamannamana (1994) 1-O-(2-Iodophenyl)-Beta-D-galactopyranose. In: Acta Crystallographica (Sectio). pp. 1726-1728.

Banerjee, Rahul and Dhanaraj, Venugopal and Mahanta, Sanjeev K and Surolia, Avadhesha and Vijayan, Mamannamana (1991) Preparation and x-ray characterization of four new crystal forms of Jacalin, a lectin from Artocarpus integrifolia. In: Journal of Molecular Biology, 221 (3). pp. 773-776.

Banerjee, Raja and Sudarslal, S and Ranganayaki, RS and Raghothama, S (2011) Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides. In: Organic and Biomolecular Chemistry, 9 (18). pp. 6234-6245.

Banerjee, Sanchari and Agrawal, Monika J and Mishra, Diptimayee and Sharan, Siddharth and Balaram, Hemalatha and Savithri, Handanhal S and Murthy, Mathur RN (2014) Structural and kinetic studies on adenylosuccinate lyase from Mycobacterium smegmatis and Mycobacterium tuberculosis provide new insights on the catalytic residues of the enzyme. In: FEBS JOURNAL, 281 (6). pp. 1642-1658.

Banerjee, Sunaina and Maurya, Satyaghosh and Roy, Rahul (2018) Single-molecule fluorescence imaging: Generating insights into molecular interactions in virology. In: JOURNAL OF BIOSCIENCES, 43 (3). pp. 519-540.

Banerjee, Tanushree and Kapoor, Neha and Surolia, Namita and Surolia, Avadhesha (2011) Benzothiophene Carboxamide Derivatives as Novel Antimalarials. In: IUBMB Life, 63 (12). pp. 1111-1115.

Banerjee, Tanushree and Sharma, Shailendra Kumar and Kapoor, Neha and Dwivedi, Vishnu and Surolia, Namita and Surolia, Avadhesha (2011) Benzothiophene Carboxamide Derivatives as Inhibitors of Plasmodium falciparum Enoyl-ACP Reductase. In: IUBMB Life, 63 (12). pp. 1101-1110.

Banerjee, Tanushree and Sharma, Shailendra Kumar and Surolia, Avadhesha and Surolia, Namita (2008) Epigallocatechin gallate is a slow-tight binding inhibitor of enoyl-ACP reductase from Plasmodium falciparum. In: Biochemical and Biophysical Research Communications, 377 (4). pp. 1238-1242.

Banerjee, Tanushree and Singh, Rajiv Ranjan and Gupta, Sarika and Surolia, Avadhesha and Surolia, Namita (2012) 15-deoxyspergualin hinders physical interaction between basic residues of transit peptide in PfENR and Hsp70-1. In: IUBMB Life, 64 (1). pp. 99-107.

Bangera, M and Panigrahi, R and Sagurthi, SR and Savithri, HS and Murthy, MRN (2015) Structural and functional analysis of two universal stress proteins YdaA and YnaF from Salmonella typhimurium: possible roles in microbial stress tolerance. In: JOURNAL OF STRUCTURAL BIOLOGY, 189 (3). pp. 238-250.

Bangera, Mamata and Gowda, Giri K and Sagurthi, SR and Murthy, MRN (2019) Structural and functional insights into phosphomannose isomerase: the role of zinc and catalytic residues. In: ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 75 (5). pp. 475-487.

Bansal, M (1977) Stereochemical restrictions on the occurrence of amino acid residues in the collagen structure. In: International Journal of Peptide and Protein Research, 9 (3). pp. 224-234.

Bansal, M and Bhattacharyya, D and Vijaylakshmi, S (1995) NUVIEW:software for display and interactive manipulation of nucleic acid models. In: CABIOS / Computer Applications in the Biosciences, 11 (3). pp. 289-292.

Bansal, Manju and Bhattacharyya, D and Ravi, B (1995) NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures. In: CABIOS / Computer Applications in the Biosciences, 11 (3). pp. 281-287.

Bansal, Manju and Gupta, Goutam (1981) Structure factor calculations of various DNA duplexes. In: International Journal of Quantum Chemistry, 20 (2). pp. 407-417.

Bansal, Ranju and Kumar, R Sunil and Kumar, Gulshan and Thota, Sridhar and Thamotharan, S and Parthasarathi, V and Linden, Anthony (2008) Formation of Aryl-bis (6-Amino-1,3-Dimethyluracil-5-yl) Methanes by reaction of 6-Amino-1, 3-Dimethyluracil with Aromatic Aldehydes. In: Journal of Heterocyclic Chemistry, 45 (6). pp. 1789-1795.

Bansal, Akanksha and Karanth, N Megha and Demeler, Borries and Schindelin, Hermann and Sarma, Siddhartha P (2019) Crystallographic Structures of IlvN center dot Val/Ile Complexes: Conformational Selectivity for Feedback Inhibition of Aceto Hydroxy Acid Synthases. In: BIOCHEMISTRY, 58 (15). pp. 1992-2008.

Bansal, M (1977) Fourier transform of the collagen triple-helical structure and its significance. In: Pramana, 9 (4). pp. 339-347.

Bansal, M (1996) Structural variations observed in DNA crystal structures and their implications for protein-DNA interaction. In: 9th Conversation in the Discipline Biomolecular Stereodynamics, JUN 20-24, 1995, Albany, NY.

Bansal, M and Ananthanarayanan, VS (1988) The Role of Hydroxyproline in Collagen Folding: Conformational Energy Calculations on Oligopeptides Containing Proline and Hydroxyproline. In: Biopolymers, 27 (2). pp. 299-312.

Bansal, M and Ramakrishnan, C and Ramachandran, GN (1975) Stabilization of the collagen structure by hydroxyproline residues. In: Proceedings of the Indian Academy of Sciences Section A, 82 (4). pp. 152-164.

Bansal, M and Ramakrishnan, C and Ramachandran, GN (1975) A triple-helical model for (Gly-Pro-Hyp)n with cis peptide units. In: Biopolymers, 14 (12). pp. 2457-2466.

Bansal, M and Ramachandran, GN (1978) A THEORETICAL STUDY OF THE STRUCTURES OF (GLY-PRO-LEU)n AND (GLY-LEU-PRO)n. In: International Journal of Peptide & Protein Research, 11 (1). pp. 73-81.

Bansal, Manju (1999) DNA structure: Yet another avatar? In: Current Science, 76 (9). pp. 1178-1181.

Bansal, Manju and Jayaram, B and Mittal, Aditya (2012) Nucleic acids in disease and disorder: Understanding the language of life emerging from the `ABC' of DNA. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 375-378.

Bansal, Manju and Kumar, Aditya and Yella, Venkata Rajesh (2014) Role of DNA sequence based structural features of promoters in transcription initiation and gene expression. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 25 . pp. 77-85.

Bansal, Manju and Kumar, Sandeep and Velavan, R (2000) HELANAL: A Program to Characterize Helix Geometry in Proteins. In: Journal of Biomolecular Structure and Dynamics, 17 (5). pp. 811-819.

Bansal, Manju and Pattabiraman, N (1989) Molecular mechanics studies on poly(purine) poly(pyrimidine) sequences in DNA: Polymorphism and local variability. In: Biopolymers, 28 (2). pp. 531-548.

Bansal, Manju (2001) The Madras Triple Helix:Origins and Current Status. In: Resonance, 6 . pp. 38-47.

Bansal, Manju and Brahmachari, Samir K and Sasisekharan, V (1979) Structural Investigations on Poly(4-hydroxy-L-proline). 1. Theoretical Studies. In: Macromolecules, 12 (1). pp. 19-23.

Bansal, Manju and Sandeep Kumar, * and Velavan, R (2000) HELANAL: A program to characterise helix geometry in proteins,. In: Journal of Biomolecular Structure & Dynamics, 17 (5). pp. 769-932.

Baral, Subhasish and Roy, Rahul and Dixit, Narendra M (2018) Modeling how reversal of immune exhaustion elicits cure of chronic hepatitis C after the end of treatment with direct-acting antiviral agents. In: IMMUNOLOGY AND CELL BIOLOGY, 96 (9). pp. 969-980.

Baranidharan, S and Gopal, ESR and Sasisekharan, V (1990) Generation of aperiodic tilings with fivefold symmetry by the method of intersecting decagons and diffraction from finite size tilings. In: Pramana, 34 (6). pp. 537-553.

Baranidharan, S and Sundaramoorthy, M and Sekhar, JA and Gopal, ESR and Sasisekharan, V (1989) X-Ray Studies Of Al6culi3 Quasicrystal. In: Phase Transitions: A Multinational Journal, 16 (1-4). pp. 615-620.

Baranidharan, S and Sundaramoorthy, M and Sekhar, JA and Gopal, ESR and Sasisekharan, V (1989) X-Ray studies of $Al_6CuLi_3$ quasicrystal. In: Phase Transitions, 16 (1-4). pp. 615-620.

Baranidharan, S (1997) Average lattices. In: Progress in Crystal Growth and Characterization of Materials, 34 (1-4). pp. 157-164.

Baranidharan, S and Balagurusamy, VSK and Srinivasan, A and Gopal, ESR and Sasisekharan, V (1989) Non-periodic tilings in 2-dimensions: 4- and 7-fold symmetries. In: Phase Transitions: A Multinational Journal, 16 . pp. 621-626.

Baranidharan, S and Gopal, ESR and Sasisekharan, V (1993) Modelling the transformation from quasicrystal to crystal. In: Fourth International Conference on Quasicrystals, 31 May-5 June 1992, St. Louis, MO, USA, pp. 640-644.

Baranidharan, S and Gopal, ESR and Sasisekharan, V (1992) Quasiperiodic tilings with fourfold symmetry. In: Acta Crystallographica Section A, 48 (5). pp. 782-784.

Baranidharan, S and Murthy, MRN (1994) Analysis of the effects of amino-acid-sequence on the structure of proteins. In: Current Science (Bangalore), 66 (11). pp. 847-856.

Baratam, K and Jha, K and Srivastava, A (2021) Flexible pivoting of dynamin pleckstrin homology domain catalyzes fission: insights into molecular degrees of freedom. In: Molecular Biology of the Cell, 32 (14). pp. 1306-1319.

Baratam, K and Srivastava, A (2024) SOP-MULTI: A Self-Organized Polymer-Based Coarse-Grained Model for Multidomain and Intrinsically Disordered Proteins with Conformation Ensemble Consistent with Experimental Scattering Data. In: Journal of Chemical Theory and Computation, 20 (22). pp. 10179-10198.

Barathy, Deivanayaga and Mattoo, Rohini and Visweswariah, Sandhya and Suguna, Kaza (2014) New structural forms of a mycobacterial adenylyl cyclase Rv1625c. In: IUCRJ, 1 (5). pp. 338-348.

Barathy, Deivanayaga V and Bharambe, Nikhil G and Syed, Wajeed and Zaveri, Anisha and Visweswariah, Sandhya S and Colaco, Melwin and Misquith, Sandra and Suguna, Kaza (2015) Autoinhibitory mechanism and activity-related structural changes in a mycobacterial adenylyl cyclase. In: JOURNAL OF STRUCTURAL BIOLOGY, 190 (3). pp. 304-313.

Barathy, Deivanayaga V and Suguna, Kaza (2013) Crystal structure of a putative aspartic proteinase domain of the Mycobacterium tuberculosis cell surface antigen PE_PGRS16. In: FEBS OPEN BIO, 3 . pp. 256-262.

Bardi, R and Piazzesi, AM and Toniolo, C and Raj, PA and Raghothama, S and Balaram, P (1986) Solid state and solution conformation of Boc-L-Met-Aib-L-Phe-OMe. Beta-turn conformation of a sequence related to an active chemotactic peptide analog. In: International Journal of Peptide & Protein Research, 27 (3). pp. 229-238.

Bardi, R and Piazzes, AM and Toniolo, C and Raj, Antony P and Raghothama, S and Balaram, P (1986) Conformations of the amino aterminal tetrapeptide of emerimicins and antiamoebins in solution and in the solid state. In: International Journal of Biological Macromolecules, 8 (4). pp. 201-206.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Balaram, P and Sukumar, M (1992) Crystal structure of (S)-pipecolic acid (2R,3R)-tartrate, C10H17NO8. In: Zeitschrift für Kristallographie, 202 (1-2). pp. 174-176.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sudhanand, * and Balaji Rao, Rao R and Balaram, Padmanabhan (1992) Crystal structure of tert-butyloxycarbonyl-a-aminoisobutyryl-C-a,a-di-n-butylglycyl-methyl ester, C20H38N2O5. In: Zeitschrift für Kristallographie, 202 (3-4). pp. 302-305.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sukumar, M and Balaram, P (1992) Structure of N-tert-Butyloxycarbonyl-alpha-aminoisobutyryl-DL-pipecolyl-alpha-aminoisobutyric Acid Methyl Ester. In: Acta Crystallographica Section C: Crystal Structure Communications, 48 (9). pp. 1645-1648.

Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Sukumar, M and Balaram, P (1992) Structure of N-tert-butyloxycarbonyl-[alpha]-aminoisobutyryl-DL-pipecolyl-[alpha]-aminoisobutyric acid methyl ester. In: Acta Crystallographica Section C, 48 . pp. 1645-1648.

Bardi, R and Piazzesi, AM and Toniolo, C and Antony Raj, P and Raghothama, Srinivasarao and Balaram, Padmanabhan (1986) Conformations of the amino terminal tetrapeptide of emerimicins and antiamoebin in solution and in the solid state. In: International Journal of Biological Macromolecules, 8 (4). pp. 201-206.

Bardi, R and Piazzesi, AM and Toniolo, C and Balaram, Padmanabhan and Sukumar, M (1986) Stereochemistry of peptides containing 1-aminocyclopentane carboxylic acid (Acc5). Solution and solid state conformations of Boc-Acc5-Acc5-NHMe. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sen, N and Balaram, H and Balaram, P (1988) Structures of Pivaloyl-L-prolyl-N-methyl-D- phenylalaninamide and Pivaloyl-L-prolyl-N-methyl-D-valinamide. In: Acta Crystallographica Section C: Crystal Structure Communications, 44 (11). pp. 1972-1976.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Balaram, P (1986) Stereochemistry of Peptides Containing 1-AminocyclopentanecarboxylicA cid ( Am5): Solution and Solid-state Conformations of Boc-Acc '-Acc'-NHMe. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Balaram, P (1986) Stereochemistry of Peptides Containing 1-Aminocyclopentanecarboxylic Acid $({Acc}^5)$ : Solution and Solid-state Conformations of $Boc-{Acc}^5-{Acc}^5-NHMe$. In: Biopolymers, 25 (9). pp. 1635-1644.

Bardi, R and Piazzesi, AM and Toniolo, C and Sukumar, M and Raj, PA and Balaram, P (1985) Conformations Of Peptides Containing 1-Aminocyclohexane-Carboxylic Acid (Acc6) - Crystal-Structures Of 2 Model Peptides. In: International Journal Of Peptide And Protein Research, 25 (6). pp. 628-639.

Basak, R and Narayanan, R (2020) Robust emergence of sharply tuned place-cell responses in hippocampal neurons with structural and biophysical heterogeneities. In: Brain Structure and Function .

Basak, Reshma and Narayanan, Rishikesh (2018) Active dendrites regulate the spatiotemporal spread of signaling microdomains. In: PLOS COMPUTATIONAL BIOLOGY, 14 (11).

Basak, Reshma and Narayanan, Rishikesh (2018) Spatially dispersed synapses yield sharply-tuned place cell responses through dendritic spike initiation. In: JOURNAL OF PHYSIOLOGY-LONDON, 596 (17). pp. 4173-4205.

Basheer, Soorej M. and Chellappan, Sreeja (2017) Enzyme Engineering. [Book Chapter]

Basu, Palash Kumar and Indukuri, Deepthi and Keshavan, Sandeep and Navratna, Vikas and Vanjari, Siva Rama Krishna and Raghavan, Srinivasan and Bhat, Navakanta (2014) Graphene based E. coli sensor on flexible acetate sheet. In: SENSORS AND ACTUATORS B-CHEMICAL, 190 . pp. 342-347.

Basuroy, Krishnayan and Dinesh, Bhimareddy and Reddy, Madhusudana MB and Chandrappa, Siddapa and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2013) Unconstrained Homooligomeric gamma-Peptides Show High Propensity for C-14 Helix Formation. In: ORGANIC LETTERS, 15 (18). pp. 4866-4869.

Basuroy, Krishnayan and Dinesh, Bhimareddy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2013) Promotion of Folding in Hybrid Peptides through Unconstrained gamma Residues: Structural Characterization of Helices in (alpha gamma gamma)(n) and (alpha gamma alpha)(n) Sequences. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 52 (11). pp. 3136-3139.

Basuroy, Krishnayan and Dinesh, Bhimareddy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) Structural Characterization of Backbone-Expanded Helices in Hybrid Peptides: (alpha gamma)(n) and (alpha beta)(n) Sequences with Unconstrained beta and gamma Homologues of L-Val. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 51 (35). pp. 8736-8739.

Basuroy, Krishnayan and Dinesh, Bhimareddy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) Structural characterization of backbone-expanded helices in hybrid peptides: (Î±Î³) n and (Î±Î²) n sequences with unconstrained Î² and Î³ homologues of L-Val. In: Angewandte Chemie - International Edition, 51 (35). pp. 8736-8739.

Basuroy, Krishnayan and Kantharaju, Kamanna and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2019) Pregabalin peptides: conformational comparison of gamma(3)- and gamma(4)-substituted gamma-amino acids in alpha gamma alpha alpha alpha pentapeptides. In: AMINO ACIDS, 51 (9). pp. 1297-1306.

Basuroy, Krishnayan and Karuppiah, Vasantham and Balaram, Padmanabhan (2014) C-11/C-9 Helices in Crystals of alpha beta Hybrid Peptides and Switching Structures between Helix Types by Variation in the alpha-Residue. In: ORGANIC LETTERS, 16 (17). pp. 4614-4617.

Basuroy, Krishnayan and Karuppiah, Vasantham and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) The Structural Characterization of Folded Peptides Containing the Conformationally Constrained beta-Amino Acid Residue beta(2,2)Ac(6)c. In: HELVETICA CHIMICA ACTA, 95 (12). pp. 2589-2603.

Basuroy, Krishnayan and Rajagopal, Appavu and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) beta-Turn Analogues in Model a ss-Hybrid Peptides: Structural Characterization of Peptides Containing ss 2,2Ac6c and ss 3,3Ac6c Residues. In: CHEMISTRY-AN ASIAN JOURNAL, 7 (7). pp. 1671-1678.

Beedessee, Girish and Ramanjooloo, Avin and Tiscornia, Ines and Cresteil, Thierry and Raghothama, Srinivasarao and Arya, Deepak and Rao, Shashanka and Gowd, Konkallu Hanumae and Bollati-Fogolin, Mariela and Marie, Daniel EP (2014) Evaluation of hexane and ethyl acetate extracts of the sponge Jaspis diastra collected from Mauritius Waters on HeLa cells. In: JOURNAL OF PHARMACY AND PHARMACOLOGY, 66 (9). pp. 1317-1327.

Beena, K and Udgaonkar, Jayant B and Varadarajan, R (2004) Effect of Signal Peptide on the Stability and Folding Kinetics of Maltose Binding Protein. In: Biochemistry, 43 (12). pp. 3608-3619.

Behera, A and Kumar, G and Akram, SA and Sain, A (2021) Deformation of membrane vesicles due to chiral surface proteins. In: Soft Matter, 17 (34). pp. 7953-7962.

Berry, MV (1977) Semi-Classical Mechanics in Phase Space: A Study of Wigner's Function. In: Philosophical Transactions of the Royal Society of London series A-Mathematical Physical and Engineering Sciences, 287 (1343). pp. 237-271.

Bhadra, Rana and Srinivasan, Narayanaswamy and Pandit, Shashi B (2005) A New Domain Family in the Superfamily of Alkaline Phosphatases. In: In Silico Biology, 5 (4). pp. 379-387.

Bhadra, R and Sandhya, S and Abhinandan, KR and Chakrabarti, Sandip and Sowdhamini, R and Srinivasan, N (2006) Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. In: Nucleic Acids Research, 34 (Sp. Is). W143-W146.

Bhagavat, Raghu and Kim, Heung-Bok and Kim, Chang-Yub and Terwilliger, Thomas C and Mehta, Dolly and Srinivasan, Narayanaswamy and Chandra, Nagasuma (2017) A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis. In: SCIENTIFIC REPORTS, 7 (1).

Bhagavat, Raghu and Sankar, Santhosh and Srinivasan, Narayanaswamy and Chandra, Nagasuma (2018) An Augmented Pocketome: Detection and Analysis of Small-Molecule Binding Pockets in Proteins of Known 3D Structure. In: STRUCTURE, 26 (3). 499+.

Bhandari, R and Brahmachari, SK (1995) Analysis of CAG/CTG triplet repeats in the human genome: Implication in transcription factor gene regulation. In: Journal Of Biosciences, 20 (5). pp. 613-627.

Bhandari, Rashna and Srinivasan, N and Mahaboobi, * and Ghanekar, Yashoda and Suguna, K and Visweswariah, Sandhya S (2001) Functional Inactivation of the Human Guanylyl Cyclase C Receptor: Modeling and Mutation of the Protein Kinase-like Domain. In: Biochemistry, 40 (31). 9196 -9206.

Bhandari, Rashna and Suguna, K and Visweswariah, Sandhya S (1999) Guanylyl Cyclase C Receptor: Regulation of Catalytic Activity by ATP. In: Bioscience Reports, 19 (3). pp. 179-188.

Bhandari, Spraha and Biswas, Sreeparna and Chaudhary, Anuradha and Dutta, Somnath and Suguna, Kaza (2019) Dodecameric structure of a small heat shock protein from Mycobacterium marinum M. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 87 (5). pp. 365-379.

Bhanuprakash Reddy, G and Yadagiri Reddy, P and Surolia, A (2017) Alzheimer's and Danish dementia peptides induce cataract and perturb retinal architecture in rats. In: Biomolecular Concepts, 8 (1). pp. 45-54.

Bharadwaj, Satish and Kaltner, Herbert and Korchagina, Elena Y and Bovin, Nicolai V and Gabius, Hans-Joachim and Surolia, Avadhesha (1999) Microcalorimetric indications for ligand binding as a function of the protein for galactoside-specific plant and avian lectins. In: Biochimica et Biophysica Acta (BBA) - General Subjects, 1472 (1-2). pp. 191-196.

Bharambe, Nikhil G and Barathy, Deivanayaga V and Syed, Wajeed and Visweswariah, Sandhya S and Colaco, Melwin and Misquith, Sandra and Suguna, Kaza (2016) Substrate specificity determinants of class III nucleotidyl cyclases. In: FEBS JOURNAL, 283 (20). pp. 3723-3738.

Bharath, Sakshibeedu R and Bisht, Shveta and Harijan, Rajesh K and Savithri, Handanahal S and Murthy, Mathur RN (2012) Structural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella typhimurium D-Cysteine Desulfhydrase. In: PLOS ONE, 7 (5).

Bharath, Sakshibeedu Rajegowda and Bisht, Shveta and Savithri, Handanhal Subbarao and Murthy, Mattur Ramabhadrashastry Narasimha (2011) Crystal structures of open and closed forms of D-serine deaminase from Salmonella typhimurium - implications on substrate specificity and catalysis. In: FEBS Journal, 278 (16). pp. 2879-2891.

Bharati, Binod K and Chatterji, Dipankar (2013) Quorum sensing and pathogenesis: role of small signalling molecules in bacterial persistence. In: CURRENT SCIENCE, 105 (5). pp. 643-656.

Bharati, Binod K and Mukherjee, Raju and Chatterji, Dipankar (2018) Substrate-induced domain movement in a bifunctional protein, DcpA, regulates cyclic di-GMP turnover: Functional implications of a highly conserved motif. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 293 (36). pp. 14065-14079.

Bharati, Binod K and Sharma, India Mani and Kasetty, Sanjay and Kumar, Manish and Mukherjee, Raju and Chatterji, Dipankar (2012) A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis. In: MICROBIOLOGY-SGM, 158 (Part 6). pp. 1415-1427.

Bharati, Binod K and Swetha, RK and Chatterji, Dipankar (2013) Identification and characterization of starvation induced msdgc-1 promoter involved in the c-di-GMP turnover. In: GENE, 528 (2). pp. 99-108.

Bhardwaj, Neerupma and Syal, Kirtimaan and Chatterji, Dipankar (2018) The role of -subunit of Escherichia coli RNA polymerase in stress response. In: GENES TO CELLS, 23 (5). pp. 357-369.

Bhasin, M and Varadarajan, R (2021) Prediction of Function Determining and Buried Residues Through Analysis of Saturation Mutagenesis Datasets. In: Frontiers in Molecular Biosciences, 8 .

Bhaskara, Ramachandra M and Mehrotra, Prachi and Rakshambikai, Ramaswamy and Gnanavel, Mutharasu and Martin, Juliette and Srinivasan, Narayanaswamy (2014) The relationship between classification of multi-domain proteins using an alignment-free approach and their functions: a case study with immunoglobulins. In: MOLECULAR BIOSYSTEMS, 10 (5). pp. 1082-1093.

Bhaskara, Ramachandra M and Padhi, Amrita and Srinivasan, Narayanaswamy (2014) Accurate prediction of interfacial residues in two-domain proteins using evolutionary information: Implications for three-dimensional modeling. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 82 (7). pp. 1219-1234.

Bhaskara, Ramachandra M and Srinivasan, Narayanaswamy (2011) Stability of domain structures in multi-domain proteins. In: Scientific Reports, 1 .

Bhat, Chanda R and Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2013) NON-GLYCINE RESIDUES IN THE DISALLOWED REGIONS OF THE RAMACHANDRAN MAP AND THEIR NEIGHBORHOOD PREFERENCES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 95-106.

Bhat, Javaid Yousuf and Venkatachala, Roopa and Singh, Kavita and Gupta, Kallol and Sarma, Siddhartha P and Balaram, Hemalatha (2011) Ammonia Channeling in Plasmodium falciparum GMP Synthetase: Investigation by NMR Spectroscopy and Biochemical Assays. In: Biochemistry, 50 (16). pp. 3346-3356.

Bhat, Prasanna and Shwetha, Shivaprasad and Sharma, Divya Khandige and Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and Das, Saumitra (2015) The beta hairpin structure within ribosomal protein S5 mediates interplay between domains II and IV and regulates HCV IRES function. In: NUCLEIC ACIDS RESEARCH, 43 (5). pp. 2888-2901.

Bhat, RG and Gudihal, R (2003) Dots, dashes and hydrogen bonds. In: Current Science, 85 (7). p. 839.

Bhat, TN and Sasisekharan, V and Vijayan, M (1979) Analysis of side-chain conformation in proteins. In: International Journal of Peptide & Protein Research, 13 (2). pp. 170-184.

Bhat, TN and Vijayan, M (1977) X-ray studies of crystalline complexes involving amino acids. II. The crystal structure of L-arginine L-glutamate. In: Acta Crystallographica Section B Structural Science, 33 (6). pp. 1754-1759.

Bhattacharjee, Arnab and Bansal, Manju (2005) Collagen Structure: The Madras Triple Helix and the Current Scenario. In: International Union of Biochemistry and Molecular Biology: Life, 57 (3). pp. 161-72.

Bhattacharjee, Subham and Bhattacharya, Santanu (2014) Phthalate mediated hydrogelation of a pyrene based system: a novel scaffold for shape-persistent, self-healing luminescent soft material. In: JOURNAL OF MATERIALS CHEMISTRY A, 2 (42). pp. 17889-17898.

Bhattacharjya, S and Venkatraman, J and Balaram, P and Kumar, A (1999) Fluoroalcohols as structure modifiers in peptides and proteins: hexafluoroacetone hydrate stabilizes a helical conformation of melittin at low pH. In: Journal of Peptide Research, 54 (2). pp. 100-111.

Bhattacharjya, Surajit and Awasthi, Satish Kumar and Adiga, Radhakantha P and Balaram, Padmanabhan (1998) Folded conformations of antigenic peptides from riboflavin carrier protein in aqueous hexafluoroacetone. In: Protein Science, 7 (1). pp. 123-131.

Bhattacharjya, Surajit and Balaram, P (1997) Effects of Organic Solvents on Protein Structures: Observation of a Structured Helical Core in Hen Egg-White Lysozyme in Aqueous Dimethylsulfoxide. In: Proteins: Structure, Function, and Genetics, 29 (4). pp. 492-507.

Bhattacharjya, Surajit and Balaram, Padmanabhan (1997) Hexafluoroacetone hydrate as a structure modifier in proteins: Characterization of a molten globule state of hen egg-white lysozyme. In: Protein Science, 6 (5). pp. 1065-1073.

Bhattacharjya, Surajit and David, Sunil A and Mathan, VI and Balaram, P (1997) Polymyxin B Nonapeptide: Conformations in Water and in the Lipopolysaccharide-Bound State Determined by Two-Dimensional NMR and Molecular Dynamics. In: Biopolymers, 41 (3). pp. 251-265.

Bhattacharya, D and Bansal, Manju (1988) A general procedure for generation of curved DNA molecules. In: Journal of Biomolecular Structure & Dynamics, 6 (1). pp. 93-104.

Bhattacharya, Avisek and Paul, Anindita and Chakrabarti, Dipanjan and DasGupta, Maitrayee (2019) Gatekeeper-Activation Loop Cross-Talk Determines Distinct Autoactivation States of Symbiosis Receptor Kinase. In: BIOCHEMISTRY, 58 (19). pp. 2419-2431.

Bhattacharya, S and Varadarajan, R (2010) Emerging trends at the interface of chemistry and biology: Applications to the design of human therapeutics. In: Journal of Chemical Sciences, 122 (2). pp. 97-107.

Bhattacharya, Santanu and Ghosh, Sangita and Easwaran, Kalpathy RK (1998) Synthesis of macrocyclic diacyl/dialkyl glycerols containing disulfide tether and studies of their effects upon incorporation in DPPC membranes. Implications in the design of phospholipase A(2) modulators. In: Journal of Organic Chemistry, 63 (25). pp. 9232-9242.

Bhattacharyya, D and Bansal, Manju (1989) A self-consistent formulation for analysis and generation of non-uniform DNA structure. In: Journal of Biomolecular Structure & Dynamics, 6 (4). pp. 635-653.

Bhattacharyya, Dhananjay and Bansal, Manju (1992) Groove width and depth of B-DNA structures depend on local variation in slide. In: Journal of Biomolecular Structure & Dynamics, 10 (1). pp. 213-226.

Bhattacharyya, Dhananjay and Bansal, Manju (1988) Why do DNA helical models exhibit wedge rolls? A mathematical rationale. In: Current Science, 57 (21). pp. 1159-1162.

Bhattacharyya, Dhananjoy and Bansal, Manju (1987) Energetics of left and right handed models of DNA. In: Journal of Biomolecular Structure & Dynamics, 4 (6). pp. 1027-1040.

Bhattacharyya, D and Bansal, M (1990) Local variability and base sequence effects in DNA crystal structures. In: Journal of Biomolecular Structure & Dynamics, 8 (3). pp. 539-572.

Bhattacharyya, Dhananjay and Halder, Sukanya and Basu, Sankar and Mukherjee, Debasish and Kumar, Prasun and Bansal, Manju (2017) RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs. In: JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 31 (2). pp. 219-235.

Bhattacharyya, Moitrayee and Bhat, Chanda R and Vishveshwara, Saraswathi (2013) An automated approach to network features of protein structure ensembles. In: PROTEIN SCIENCE, 22 (10). pp. 1399-1416.

Bhattacharyya, Moitrayee and Ghosh, Amit and Hansia, Priti and Vishveshwara, Saraswathi (2010) Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks. In: Proteins: Structure, Function, and Bioinformatics, 78 (3). pp. 506-517.

Bhattacharyya, Moitrayee and Ghosh, Soma and Vishveshwara, Saraswathi (2015) Protein Structure and Function: Looking through the Network of Side-Chain Interactions. In: CURRENT PROTEIN & PEPTIDE SCIENCE, 17 (1). pp. 4-25.

Bhattacharyya, Moitrayee and Gupta, Kallol and Gowd, Konkallu Hanumae and Balaram, Padmanabhan (2013) Rapid mass spectrometric determination of disulfide connectivity in peptides and proteins. In: Molecular BioSystems, 9 (6). pp. 1340-1350.

Bhattacharyya, Moitrayee and Upadhyay, Roopali and Vishveshwara, Saraswathi (2012) Interaction Signatures Stabilizing the NAD(P)-Binding Rossmann Fold: A Structure Network Approach. In: PLOS ONE, 7 (12).

Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2010) Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis. In: BMC Structural Biology, 10 .

Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2009) Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks. In: BMC Structural Biology, 9 . pp. 1-16.

Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2011) Quantum clustering and network analysis of MD simulation trajectories to probe the conformational ensembles of protein-ligand interactions. In: Molecular BioSystems, 7 (7). pp. 2320-2330.

Bhattacharyya, Moitrayee and Vishyeshwara, Saraswathi (2011) Probing the Allosteric Mechanism in Pyrrolysyl-tRNA Synthetase Using Energy-Weighted Network Formalism. In: Biochemistry, 50 (28). pp. 6225-6236.

Bhattacharyya, Sanchari and Rajan, Roshan Elizabeth and Swarupa, Yalla and Rathore, Ujjwal and Verma, Anjali and Udaykumar, Ranga and Varadarajan, Raghavan (2010) Design of a Non-glycosylated Outer Domain-derived HIV-1 gp120 Immunogen That Binds to CD4 and Induces Neutralizing Antibodies. In: Journal of Biological Chemistry, 285 (35). pp. 27100-27110.

Bhattacharyya, Sanchari and Singh, Pranveer and Rathore, Ujjwal and Purwar, Mansi and Wagner, Denise and Arendt, Heather and DeStefano, Joanne and LaBranche, Celia C and Montefiori, David C and Phogat, Sanjay and Varadarajan, Raghavan (2013) Design of an Escherichia coli expressed HIV-1 gp120 fragment Immunogen that binds to b12 and induces broad and potent neutralizing antibodies. In: Journal of Biological Chemistry, 288 (14). pp. 9815-9825.

Bhattacharyya, Sanchari and Varadarajan, Raghavan (2013) Packing in molten globules and native states. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 23 (1). pp. 11-21.

Bhattacharyya , D and Bansal, M (1994) Analysis of sequence dependent variations in secondary and tertiary structure of tRNA molecules. In: Journal of Biomolecular Structure & Dynamics, 11 (6). pp. 1251-1275.

Bhaumik, Anusarka and Ramakanth, Madhugiri and Brar, Loveleen Kaur and Raychaudhuri, Arup K and Rondelez, Francis and Chatterji, Dipankar (2004) Formation of a DNA Layer on Langmuir-Blodgett Films and Its Enzymatic Digestion. In: Langmuir, 20 (14). pp. 5891-5896.

Bhavani, BS and Rajaram, V and Bisht, Shveta and Kaul, Purnima and Prakash, V and Murthy, MRN and Rao, N Appaji and Savithr, HS (2008) Importance of tyrosine residues of Bacillus stearothermophilus serine hydroxymethyltransferase in cofactor binding and l-allo-Thr cleavage. In: FEBS Journal, 274 (18). pp. 4606-4619.

Bheemireddy, S and Sandhya, S and Srinivasan, N (2021) Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins. In: Frontiers in Molecular Biosciences, 8 .

Bheemireddy, S and Sandhya, S and Srinivasan, N and Sowdhamini, R (2022) Computational tools to study RNA-protein complexes. In: Frontiers in Molecular Biosciences, 9 .

Bheemireddy, S and Srinivasan, N (2022) Computational Study on the Dynamics of Mycobacterium Tuberculosis RNA Polymerase Assembly. [Book Chapter]

Bhimsaria, D and RodrÃguez-MartÃnez, JA and Mendez-Johnson, JL and Ghoshdastidar, D and Varadarajan, A and Bansal, M and Daniels, DL and Ramanathan, P and Ansari, AZ (2023) Hidden modes of DNA binding by human nuclear receptors. In: Nature Communications, 14 (1).

Bhinge, A and Chakrabarti, P and Uthanumallian, K and Bajaj, K and Chakraborty, K and Varadarajan, R (2004) Accurate detection of protein:ligand binding sites using molecular dynamics simulations. In: Structure, 12 (11). pp. 1989-1999.

Bhor, Vikrant M and Thomas, Celestine J and Surolia, Namita and Surolia, Avadhesha (2005) Polymyxin B: An ode to an old antidote for endotoxic shock. In: Molecular BioSystems, 1 (3). pp. 213-222.

Bhowmick, J and Nag, M and Ghosh, P and Rajmani, RS and Chatterjee, R and Karmakar, K and Chandra, K and Chatterjee, J and Chakravortty, D and Varadarajan, R (2023) A CcdB toxin-derived peptide acts as a broad-spectrum antibacterial therapeutic in infected mice. In: EMBO Reports .

Bhowmick, Tuhin and Ghosh, Soumitra and Dixit, Karuna and Ganesan, Varsha and Ramagopal, Udupi A and Dey, Debayan and Sarma, Siddhartha P and Ramakumar, Suryanarayanarao and Nagaraja, Valakunja (2014) Targeting Mycobacterium tuberculosis nucleoid-associated protein HU with structure-based inhibitors. In: NATURE COMMUNICATIONS, 5 .

Bhowmik, Debipreeta and Bhardwaj, Neerupma and Chatterji, Dipankar (2017) Influence of Flexible ``omega'' on the Activity of E-coli RNA Polymerase: A Thermodynamic Analysis. In: BIOPHYSICAL JOURNAL, 112 (5). pp. 901-910.

Bhowmik, Debipreeta and Kumar, Gopinatha Suresh (2017) A comparative spectroscopic and calorimetric investigation of the interaction of amsacrine with heme proteins, hemoglobin and myoglobin. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 35 (6). pp. 1260-1271.

Bhuvaneshwari, M and Subramanya, HS and Gopinath, K and Savithri, HS and Nayudu, MV and Murthy, MRN (1995) Structure of sesbania mosaic virus at 3 å resolution. In: Structure, 3 (10). pp. 1021-1030.

Bhuvaneshwari, M and Subramanya, HS and Murthy, MRN and Gopinath, K and Savithri, HS (1997) Architecture of small RNA viruses. In: Progress in Crystal Growth and Characterization of Materials, 34 (1-4). pp. 1-10.

Biji, A and Khatun, O and Swaraj, S and Narayan, R and Rajmani, RS and Sardar, R and Satish, D and Mehta, S and Bindhu, H and Jeevan, M and Saini, DK and Singh, A and Gupta, D and Tripathi, S (2021) Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples. In: EBioMedicine, 70 .

Bisht, S and Bharath, SR and Savithri, HS and Murthy, MRN (2013) FOLD TYPE II PYRIDOXAL 5 `-PHOSPHATE DEPENDENT ENZYMES: STRUCTURE, SUBSTRATE RECOGNITION AND CATALYSIS. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 398-416.

Bisht, Shveta and Rajaram, Venkatesan and Bharath, Sakshibeedu R and Kalyani, Josyula Nitya and Khan, Farida and Rao, Appaji N and Savithri, Handanahal S and Murthy, Mathur RN (2012) Crystal Structure of Escherichia coli Diaminopropionate Ammonia-lyase Reveals Mechanism of Enzyme Activation and Catalysis. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 287 (24). pp. 20369-20381.

Biswal, BK and Sukumar, N and Vijayan, M (2000) Hydration, mobility and accessibility of lysozyme: structures of a pH 6.5 orthorhombic form and its low-humidity variant and a comparative study involving 20 crystallographically independent molecules. In: Acta Crystallographica Section D, 56 . pp. 1110-1119.

Biswal, BK and Vijayan, M (2001) Structure of human methaemoglobin: The variation of a theme. In: Current Science, 81 (8). pp. 1100-1105.

Biswal, BK and Vijayan, M (2002) Structures of human oxy- and deoxyhaemoglobin at different levels of humidity: variability in the T state. In: Acta Crystallographica Section D: Biological Crystallography, 58 (7). pp. 1155-1161.

Biswas, Margaret and Rao, VSR (1981) Conformational analysis of some mannose-containing and milk oligosaccharides: Correlation of their shape with inhibitory properties in antigen/antibody interactions. In: International Journal of Quantum Chemistry, 20 (1). pp. 99-121.

Biswas, Margaret and Rao, VSR (1980) Conformational analysis of the milk oligosaccharides. In: Biopolymers, 19 (8). pp. 1555-1566.

Biswas, Margaret and Sekharudu, Chandra Y and Rao, VSR (1987) The Conformation of Glycans of the Oligo-$D$-Mannosidic Type, and their Interaction with Concanavalin A: A Computer-Modelling Study. In: Carbohydrate Research, 160 . pp. 151-170.

Biswas, Margaret and Sekharudu, Y Chandra and Rao, VSR (1986) Complex carbohydrates: 1. Conformational studies on some oligosaccharides related to N-glycosyl proteins which interact with concanavalin A. In: International Journal of Biological Macromolecules, 8 (1). pp. 2-8.

Biswas, S and Garg, P and Dutta, S and Suguna, K (2021) Multiple nanocages of a cyanophage small heat shock protein with icosahedral and octahedral symmetries. In: Scientific Reports, 11 (1).

Bobbili, KB and Singh, B and Narahari, A and Bulusu, G and Surolia, A and Swamy, MJ (2019) Chitooligosaccharide binding to CIA17 (Coccinia indica agglutinin). Thermodynamic characterization and formation of higher order complexes. In: International Journal of Biological Macromolecules, 137 . pp. 774-782.

Bobbili, KB and Sivaji, N and Priya, B and Suguna, K and Surolia, A (2023) Structure and interactions of the phloem lectin (phloem protein 2) Cus17 from Cucumis sativus. In: Structure, 31 (4). 464-479.e5.

Bobbili, Kishore Babu and Pohlentz, Gottfried and Narahari, Akkaladevi and Sharma, Kaushal and Surolia, Avadhesha and Mormann, Michael and Swamy, Musti J (2018) Coccinia indica agglutinin, a 17 kDa PP2 like phloem lectin: Affinity purification, primary structure and formation of self-assembled filaments. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 108 . pp. 1227-1236.

Bodosa, J and Iyer, SS and Srivastava, A (2020) Preferential Protein Partitioning in Biological Membrane with Coexisting Liquid Ordered and Liquid Disordered Phase Behavior: Underlying Design Principles. In: Journal of Membrane Biology .

Bokolia, NP and Bag, K and Sarkar, B and Jhawar, R and Chatterji, D and Jayaraman, N and Ghosh, A (2024) A novel C-4-modified isotetrone acts as a potent bio-enhancer to augment the activities of anti-tuberculosis drugs against Mycobacterium tuberculosis. In: Tuberculosis, 149 .

Bommakanti, Gayathri and Citron, Michael P and Hepler, Robert W and Callahan, Cheryl and Heidecker, Gwendolyn J and Najar, Tariq Ahmad and Lu, Xianghan and Joyce, Joseph G and Shiver, John W and Casimiro, Danilo R and ter Meulen, Jan and Liang, Xiaoping and Varadarajan, Raghavan (2010) Design of an HA2-based Escherichia coli expressed influenza immunogen that protects mice from pathogenic challenge. In: Proc Natl Acad Sci Unit States Am, 107 (31). pp. 13701-13706.

Borkar, Maheshkumar R and Nandan, Santosh and Nagaraj, Harish KM and Puttur, Jayashree and Manniyodath, Jisha and Chatterji, Dipankar and Coutinho, Evans C (2019) 4-Hydroxy-2-pyridone Derivatives and the delta-pyrone Isostere as Novel Agents Against Mycobacterium smegmatis Biofilm Inhibitors. In: MEDICINAL CHEMISTRY, 15 (1). pp. 28-37.

Brahmachari, SK and Meera, G and Sarkar, PS and Balagurumoorthy, P and Tripathi, J and Raghavan, S and Shaligram, U and Pataskar, S (1995) Simple repetitive sequences in the genome: structure and functional significance. In: Electrophoresis, 16 (9). pp. 1705-1714.

Brahmachari, SK and Ramesh, N and Das, MR and Parnaik, VK (1985) Poly(dG-dC) in the Z-form inhibits E. coli DNA polymerase I and AMV DNA polymerase activity. In: Biochemistry International, 11 (13). pp. 281-290.

Brahmachari, SK and Mishra, RK and Bagga, R and Ramesh, N (1989) DNA duplex with the potential to change handedness after every half a turn. In: Nucleic Acids Research, 17 (18). pp. 7273-7281.

Brahmachari, SK and Sarkar, PS (1994) Intramolecular DNA triple-helix and regulation of gene-expression. In: 8th Conversation in the Discipline Biomolecular Stereodynamics, JUN 22-26, 1993, Suny albany.

Brahmachari, SK and Ananthanarayanan, VS (1979) Beta-turns in nascent procollagen are sites of posttranslational enzymatic hydroxylation of proline. In: PNAS, 76 (10). pp. 5119-5123.

Brahmachari, Samir K and Ananthanarayanan, VS (1978) Conformational Criteria for the Enzymatic Hydroxylation of Proline in Collagen. In: Current Science (Bangalore), 47 (4). 107-108 .

Brahmachari, Samir K and Ananthanarayanan, VS and Brahms, S and Brahms, J and Rapaka, Rao S and Bhatnagar, Rajendra S (1979) Vacuum ultraviolet circular dichroism spectrum of β-turn in solution. In: Biochemical and Biophysical Research Communications, 86 (3). pp. 605-612.

Brahmachari, Samir K and Ananthanarayanan, VS and Rapaka, Rao S and Bhatnagar, Rajendra S (1978) Polypeptide Models of Collagen, 11. Solution Properties of $(Pro-Gly-Phe)_n$. In: Biopolymers, 17 (9). pp. 2097-2105.

Brahmachari, Samir K and Ananthanarayanan, VS and Rapaka, Rao S and Bhatnagar, Rajendra S (1978) Polypeptide models of collagen. II. Solution properties of (Pro-Gly-Phe)n. In: Biopolymers, 17 (9). 2097-2105 .

Brahmachari, Samir K and Bansal, Manju and Ananthanarayanan, VS and Sasisekharan , V (1979) Structural Investigations on Poly(4-hydroxy-L-proline). 2. Physicochemical Studies. In: Macromolecules, 12 (1). pp. 23-28.

Brahmachari, Samir K and Rapaka, Rao S and Bhatnagar, Rajendra S and Ananthanarayanan, VS (1982) Proline-containing \beta-turns in peptides and proteins. II. Physicochemical studies on tripeptides with the Pro-Gly sequence. In: Biopolymers, 21 (6). pp. 1107-1125.

Brahmachari, Samir K and Sarkar, Partha S and Raghavan, Sowmya and Narayan, Malathy and Maiti, Amit K (1997) Polypurine/polypyrimidine sequences as cis-acting transcriptional regulators. In: Gene, 190 (1). pp. 17-26.

Brahmachari, Samir K and ShoucheCharles, YS and Cantor, R and McClelland, Michael (1987) Sequences that adopt non-B-DNA conformation in form V DNA as probed by enzymic methylation. In: Journal of Molecular Biology, 193 (1). pp. 201-211.

Brahmachari, Vani and Nagasuma, R and Brahmachari, Samir K (1989) Preparation of megabase DNA from adult insects and mammalian spleen for pulsed-field gel electrophoresis. In: Journal of Genetics, 68 (3). pp. 185-186.

Brar, Loveleen K and Rajdev, Priya and Raychaudhuri, Arup K and Chatterji, Dipankar (2005) Langmuir Monolayer as a Tool toward Visualization of a Specific DNA-Protein Complex. In: Langmuir, 21 (23). pp. 10671-10675.

Brinda, KV and Kannan, N and Vishveshwara, S (2002) Analysis of homodimeric protein interfaces by graph-spectral methods. In: Protein Engineering, 15 (4). pp. 265-277.

Brinda, KV and Mitra, Nivedita and Surolia, Avadhesha and Vishveshwara, Saraswathi (2004) Determinants of quaternary association in legume lectins. In: Protein Science, 13 (7). pp. 1735-1749.

Brinda, KV and Surolia, Avadhesha and Vishveshwara, Sarawathi (2005) Insights into the quaternary association of proteins through structure graphs: a case study of lectins. In: Biochemical Journal, 391 (Part 1). pp. 1-15.

Brinda, KV and Vishveshwara, S (2005) A network representation of protein structures: Implications for protein stability. In: Biophysical Journal, 89 (6). pp. 4159-4170.

Brinda, KV and Vishveshwara, Saraswathi (2006) Characterization of the backbone geometry of protein native state structures. In: Proteins: Structure, Function, and Bioinformatics, 64 (4). pp. 992-1000.

Brinda, KV and Vishveshwara, Saraswathi (2005) Oligomeric protein structure networks: insights into protein-protein interactions. In: BMC Bioinformatics, 6 .

Brinda, KV and Vishveshwara, Saraswathi and Vishveshwara, Smitha (2010) Random network behaviour of protein structures. In: Molecular Biosystems, 6 (2). pp. 391-398.

Bryan, RK and Bansal, Manju and Folkhard, , W and Nave, C and Marvin , DA (1983) Maximum-entropy calculation of the electron density at 4 A resolution of Pf1 filamentous bacteriophage. In: Proceedings Of The National Academy Of Sciences of the United States of America-Biological Sciences , 80 (15). 4728-4731 .

Bulusu, Vinay and Thakur, Suman S and Venkatachala, Roopa and Balaram, Hemalatha (2011) Mechanism of growth inhibition of intraerythrocytic stages of Plasmodium falciparum by 5-aminoimidazole-4-carboxamide ribonucleoside (AICAR). In: Molecular and Biochemical Parasitology, 177 (1). pp. 1-11.

Burada, AP and Penmatsa, A (2021) A Nobel Prize for understanding the molecular basis of sensing pain and touch. In: Current Science, 121 (10). pp. 1274-1277.

C

Cajal, Yolanda and Ghanta, Jiothy and Easwaran, Kalpathy and Surolia, Avadhesha and Jain, Mahendra Kumar (1996) Specificity for the Exchange of Phospholipids Through Polymyxin B Mediated Intermembrane Molecular Contacts. In: Biochemistry, 35 (18). pp. 5684-5695.

Celestine, Thomas J and Avadhesha, Surolia (1999) Kinetics of the interaction of endotoxin with polymyxin B and its analogs: a surface plasmon resonance analysis. In: FEBS Letters, 445 (2-3). pp. 420-424.

Chacko, Anita R and Arifullah, Mohammed and Sastri, Narayan P and Jeyakanthan, Jeyaraman and Ueno, Go and Sekar, Kanagaraj and Read, Randy J and Dodson, Eleanor J and Rao, Durga C and Suguna, Kaza (2011) Novel Pentameric Structure of the Diarrhea-Inducing Region of the Rotavirus Enterotoxigenic Protein NSP4. In: Journal of Virology, 85 (23). pp. 12721-12732.

Chacko, Anita R and Jeyakanthan, J and Ueno, G and Sekar, K and Rao, Durga C and Dodson, Eleanor J and Suguna, Kaza and Read, Randy J (2012) A new pentameric structure of rotavirus NSP4 revealed by molecular replacement. In: Acta Crystallographica Section D, 68 (Part 1). pp. 57-61.

Chacko, Anita R and Zwart, Peter H and Read, Randy J and Dodson, Eleanor J and Rao, CD and Suguna, Kaza (2012) Severe diffraction anisotropy, rotational pseudosymmetry and twinning complicate the refinement of a pentameric coiled-coil structure of NSP4 of rotavirus. In: Acta Crystallographica Section D Biological Crystallography, 68 (11). pp. 1541-1548.

Chadha, J and Khullar, L and Mittal, N (2021) Facing the wrath of enigmatic mutations: a review on the emergence of severe acute respiratory syndrome coronavirus 2 variants amid coronavirus disease-19 pandemic. In: Environmental Microbiology .

Chakour, Mohammed and Reichenwallner, Joerg and Selmke, Benjamin and Chen, Chen and Theison, Sandra and Chakraborthy, Rusha and Indu, S and Varadarajan, Rhagavan and Hinderberger, Dariush and Trommer, Wolfgang E (2014) The Molten Globule State of Maltose Binding Protein: DEER Measurements at PH 3. In: BIOPHYSICAL JOURNAL, 106 (2, 1). 473A.

Chakrabarti, Kalyan Sundar and Thakur, Krishan Gopal and Gopal, B and Sarma, Siddhartha P (2010) X-ray crystallographic and NMR studies of pantothenate synthetase provide insights into the mechanism of homotropic inhibition by pantoate. In: FEBS Journal, 277 (3). pp. 697-712.

Chakrabarti, A and Chatterji, D (2023) Sunil Kumar Podder (1937-2023). In: Current Science, 124 (11). pp. 1355-1356.

Chakrabarti, A and Srivastava, S and Swaminathan, CP and Surolia, A and Varadarajan, R (1999) Thermodynamics of replacing an alpha-helical Pro residue in the P40S mutant of Escherichia coli thioredoxin. In: Protein Science, 8 (11). pp. 2455-2459.

Chakrabarti, Kalyan Sundar and Sarma, Siddhartha P (2006) NMR assignment of $^2H$, $^{13}C$ and $^{15}N$ labeled amino-terminal domain of apo-pantothenate synthetase from E. coli. In: Journal of Biomolecular NMR, 36 (Suppl ). p. 38.

Chakrabarti, Kalyan Sundar and Sarma, Siddhartha P (2006) NMR assignment of H-2, C-13 and N-15 labeled amino-terminal domain of apo-pantothenate synthetase from E-coli. In: Journal of Biomolecular NMR, 36 (Suppl.). p. 38.

Chakrabarti, Kalyan Sundar and Sanjeev, BS and Vishveshwara, Saraswathi (2004) Stability and Dynamics of Domain-Swapped Bovine-Seminal Ribonuclease. In: Chemistry and Biodiversity, 1 (5). pp. 802-818.

Chakrabarty, Subhra Prakash and Saikumari, Yegnisettipalli Krishnaiah and Bopanna, Monnanda P and Balaram, Hemalatha (2008) Biochemical characterization of Plasmodium falciparum Sir2,a $NAD^+$-dependent deacetylase. In: Molecular and Biochemical Parasitology, 158 (2). pp. 139-151.

Chakraborti, S and Bheemireddy, S and Srinivasan, N (2020) Repurposing drugs against the main protease of SARS-CoV-2: Mechanism-based insights supported by available laboratory and clinical data. In: Molecular Omics, 16 (5). pp. 474-491.

Chakraborti, S and Chakraborty, M and Bose, A and Srinivasan, N and Visweswariah, SS (2021) Identification of Potential Binders of Mtb Universal Stress Protein (Rv1636) Through an in silico Approach and Insights Into Compound Selection for Experimental Validation. In: Frontiers in Molecular Biosciences, 8 .

Chakraborti, S and Chakravarthi, P and Srinivasan, N (2020) A ligand-centric approach to identify potential drugs for repurposing: Case study with aurora kinase inhibitors. [Book Chapter]

Chakraborti, S and Hatti, K and Srinivasan, N (2021) â��All That Glitters Is Not Goldâ��: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses. In: International Journal of Molecular Sciences, 22 (13).

Chakraborti, S and Hatti, K and Srinivasan, N (2021) ‘All That Glitters Is Not Gold’: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses. In: International Journal of Molecular Sciences, 22 (13).

Chakraborti, S and Ramakrishnan, G and Srinivasan, N (2019) In Silico Modeling of FDA-Approved Drugs for Discovery of Anticandida Agents: A Drug-Repurposing Approach. [Book Chapter]

Chakraborti, S and Ramakrishnan, G and Srinivasan, N (2019) Repurposing Drugs Based on Evolutionary Relationships Between Targets of Approved Drugs and Proteins of Interest. [Book Chapter]

Chakraborti, Soumyananda and Dhar, Gopa and Dwivedi, Vishnu and Das, Amlan and Poddar, Asim and Chakraborti, Gopal and Basu, Gautam and Chakrabarti, Pinak and Surolia, Avadhesha and Bhattacharyya, Bhabatarak (2013) Stable and Potent Analogues Derived from the Modification of the Dicarbonyl Moiety of Curcumin. In: BIOCHEMISTRY, 52 (42). pp. 7449-7460.

Chakraborty, AK and Saha, S and Poria, K and Samanta, T and Gautam, S and Mukhopadhyay, J (2022) A saponin-polybromophenol antibiotic (CU1) from Cassia fistula Bark Against Multi-Drug Resistant Bacteria Targeting RNA polymerase. In: Current Research in Pharmacology and Drug Discovery, 3 .

Chakraborty, Kausik and Durani, Venuka and Roshan Miranda, Edward and Citron, Michael and Liang, Xiaoping and Schleif, William and Joyce, Joseph G and Varadarajan, Raghavan (2006) Design of immunogens that present the crown of the HIV-1 V3 loop in a conformation competent to generate 447-52D-like antibodies. In: Biochemical Journal, 399 . pp. 483-491.

Chakraborty, Kausik and Shivakumar, P and Raghothama, S and Varadarajan, Raghavan (2005) NMR structural analysis of a peptide mimic of the bridging sheet of HIV-1 gp120 in methanol and water. In: Biochemical Journal, 390 (Part 2). pp. 573-581.

Chakraborty, Kausik and Thakurela, Sudhir and Prajapati, Ravindra Singh and Indu, S and Ali, Shaik Syed P and Ramakrishnan, C and Varadarajan, Raghavan (2005) Protein Stabilization by Introduction of Cross-Strand Disulfides. In: Biochemistry, 44 (44). pp. 14638-14646.

Chakraborty, Surajit and Bhattacharyya, Rajasri and Sayal, Kirtimaan and Banerjee, Dibyajyoti (2014) Retinoic Acid and Iron Metabolism: A Step Towards Design of a Novel Antitubercular Drug. In: CURRENT PHARMACEUTICAL BIOTECHNOLOGY, 15 (12). pp. 1166-1172.

Chakravarty, Suvobrata and Bhinge, Akshay and Varadarajan, Raghavan (2002) A Procedure for Detection and Quantitation of Cavity Volumes in Proteins. In: Journal of Biological Chemistry, 277 (35). pp. 31345-31353.

Chakravarty, Suvobrata and Bhinge, Akshay and Varadarajan, Raghavan (2002) A procedure for detection and quantitation of cavity volumes in proteins. Application to measure the strength of the hydrophobic driving force in protein folding. In: Journal of Biological Chemistry, 277 (35). pp. 31345-31353.

Chakravarty, Suvobrata and Mitra, Nivedita and Queitsch, Iris and Surolia, Avadhesha and Varadarajan, Raghavan and Dubel, Stefan (2000) Protein stabilization through phage display. In: FEBS Letters, 476 (3). pp. 296-300.

Chakravarty, Suvobrata and Varadarajan, Raghavan (2002) Elucidation of Factors Responsible for Enhanced Thermal Stability of Proteins: A Structural Genomics Based Study. In: Biochemistry, 41 (25). pp. 8152-8161.

Chakravarty, Suvobrata and Varadarajan, Raghavan (2000) Elucidation of determinants of protein stability through genome sequence analysis. In: FEBS Letters, 470 (1). pp. 65-69.

Chakravarty, Suvobrata and Varadarajan, Raghavan (1999) Residue depth: A novel parameter for the analysis of protein structure and stability. In: Structure, 7 (7). pp. 723-732.

Chakshusmathi, Ghadiyaram and Mondal, Kajari and Lakshmi, Santosh G and Singh, Guramrit and Roy, Ankita and Babu, Ravindra Ch and Madhusudhanan, S and Varadarajan, Raghavan (2004) Design of temperature-sensitive mutants solely from amino acid sequence. In: Proceedings of the National Academy of Sciences, 101 (21). pp. 7925-7930.

Chandra, Kasturi and Garai, Preeti and Chakravortty, Jayanta and Chakravortty, Dipshikha (2017) Peptide transporter YjiY influences the expression of the virulence gene mgtC to regulate biofilm formation in Salmonella. In: FEMS Microbiology Letters, 364 (24). ISSN 1574-6968

Chandra, NR and Muirhead, Hilary and Holbrook, John J and Bernstein, Bradley E and Hol, Wim GJ and Sessions, Richard B (1998) A general method of domain closure is applied to phosphoglycerate kinase and the result compared with the crystal structure of a closed conformation of the enzyme. In: Protien Structure, Function, and Genetics, 30 (4). pp. 372-380.

Chandra, Nagasuma R and Dam, Tarun K and Surolia, A and Vijayan, M (1997) Crystallization and preliminary crystallographic studies on the mannose-specific lectin from garlic. In: Acta Crystallographica Section D, 53 . pp. 787-788.

Chandra, Nagasuma R and Prabu, MM and Suguna, K and Vijayan, M (2001) Structural Similarity and Functional Diversity in Proteins containing the Legume Lectin Fold. In: Protien Engineering, 14 (11). pp. 857-866.

Chandra, Nagasuma R and Prabu, Moses M and Venkatraman, Janani and Suresh, Stephen and Vijayan, M (1998) X-ray studies on crystalline complexes involving amino acids and peptides. XXXIII. Crystal structures of L- and DL-arginine complexed with oxalic acid and a comparative study of amino acid oxalic acid complexes. In: Acta Crystallographica Section B Acta Crystallogr B, 54 (03). pp. 257-263.

Chandra, Nagasuma R and Ramachandraiah, Gosu and Bachhawat, Kiran and Dam, Tarun K and Surolia, A and Vijayan, M (1999) Crystal Structure of a Dimeric Mannose-specific Agglutinin from Garlic: Quaternary Association and Carbohydrate Specificity. In: Journal of Molecular Biology, 285 . pp. 1157-1168.

Chandra, S and Chattopadhyay, G and Varadarajan, R (2021) Rapid Identification of Secondary Structure and Binding Site Residues in an Intrinsically Disordered Protein Segment. In: Frontiers in Genetics, 12 .

Chandra, S and Manjunath, K and Asok, A and Varadarajan, R (2023) Mutational scan inferred binding energetics and structure in intrinsically disordered protein CcdA. In: Protein Science, 32 (3).

Chandra, Sunandini and Kalaivani, Raju and Kumar, Manoj and Srinivasan, Narayanaswamy and Sarkar, Debi P (2017) Sendai virus recruits cellular villin to remodel actin cytoskeleton during fusion with hepatocytes. In: MOLECULAR BIOLOGY OF THE CELL, 28 (26). pp. 3801-3814.

Chandran, AV and Srikalaivani, R and Paul, A and Vijayan, M (2019) Biochemical characterization of Mycobacterium tuberculosis LexA and structural studies of its C-terminal segment. In: Acta Crystallographica Section D: Structural Biology, 75 (1). pp. 41-55.

Chandran, Aneesh and Chee, Xavier and Prole, David L and Rahman, Taufiq (2019) Exploration of inositol 1,4,5-trisphosphate (IP3) regulated dynamics of N-terminal domain of IP3 receptor reveals early phase molecular events during receptor activation. In: SCIENTIFIC REPORTS, 9 . p. 2454.

Chandran, Aneesh and Vishveshwara, Saraswathi (2016) Exploration of the conformational landscape in pregnane X receptor reveals a new binding pocket. In: PROTEIN SCIENCE, 25 (11). pp. 1989-2005.

Chandran, Anu V and Jayanthi, S and Vijayan, M (2018) Structure and interactions of RecA: plasticity revealed by molecular dynamics simulations. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 36 (1). pp. 98-111.

Chandran, Anu V and Prabu, J Rajan and Manjunath, GP and Patil, Neelakanteshwar K and Muniyappa, K and Vijayan, M (2010) Crystallization and preliminary X-ray studies of the C-terminal domain of Mycobacterium tuberculosis LexA. In: Acta Crystallographica Section F, 66 (Part 9). pp. 1093-1095.

Chandran, Anu V and Prabu, Rajan J and Nautiyal, Astha and Patil, Neelakanteshwar K and Muniyappa, K and Vijayan, M (2015) Structural studies on Mycobacterium tuberculosis RecA: Molecular plasticity and interspecies variability. In: JOURNAL OF BIOSCIENCES, 40 (1). pp. 13-30.

Chandran, T and Sivaji, N and Surolia, A and Vijayan, M (2018) Ligand binding and retention in snake gourd seed lectin (SGSL). A crystallographic, thermodynamic and molecular dynamics study. In: Glycobiology, 28 (12). pp. 968-977.

Chandran, Thyageshwar and Sharma, Alok and Vijayan, M (2010) Crystallization and preliminary X-ray studies of a galactose-specific lectin from the seeds of bitter gourd (Momordica charantia). In: Acta Crystallographica Section F, 66 (Part 9). pp. 1037-1040.

Chandran, Thyageshwar and Sharma, Alok and Vijayan, M (2015) Structural studies on a non-toxic homologue of type II RIPs from bitter gourd: Molecular basis of non-toxicity, conformational selection and glycan structure. In: JOURNAL OF BIOSCIENCES, 40 (5). pp. 929-941.

Chandran, Thyageshwar and Sharma, Alok and Vijayan, Mamannamana (2013) Generation of Ligand Specificity and Modes of Oligomerization in beta-Prism I Fold Lectins. [Book Chapter]

Chandrappa, S and Narasimhamurthy, KH and Joy, MN and Rangappa, KS (2021) One-pot tandem approach for the diastereoselective syn-diacetoxylation of cinnamic esters. In: Chemical Data Collections, 34 .

Chandrappa, Siddappa and Aravinda, Subrayashastry and Raghothama, Srinivasarao and Sonti, Rajesh and Rai, Rajkishor and Harini, Veldore V and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) Helix and hairpin nucleation in short peptides using centrally positioned conformationally constrained dipeptide segments. In: Organic and Biomolecular Chemistry, 10 (14). pp. 2815-2823.

Chandrappa, Siddappa and Reddy, MB Madhusudana and Sonti, Rajesh and Basuroy, Krishnayan and Raghothama, Srinivasarao and Balaram, Padmanabhan (2015) Directing peptide conformation with centrally positioned pre-organized dipeptide segments: studies of a 12-residue helix and beta-hairpin. In: AMINO ACIDS, 47 (2). pp. 291-301.

Chandrasekaran, R and Lakshminarayanan, AV and Mohanakrishnan, P and Ramachandran, GN (1973) Conformation of Cyclic Dipeptides from Empirical Energy Calculations. In: Biopolymers, 12 (6). pp. 1421-1425.

Chandrasekaran, R and Lakshminarayanan, AV and Pandya, UV and Ramachandran, GN (1973) Conformation of the LL and LD hairpin bends with internal hydrogen bonds in proteins and peptides. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 303 (1). 14 -27.

Chandrasekaran, R and Prasad, BV Venkataram and Kopple, Kenneth D (1978) The Conformation of Polypeptides Containing Alternating l- and d-Amino Acids. In: Critical Reviews in Biochemistry, 5 (2). 125-161 .

Chandrasekhar, G and Srinivasan, E and Nandhini, S and Pravallika, G and Sanjay, G and Rajasekaran, R (2023) Computer aided therapeutic tripeptide design, in alleviating the pathogenic proclivities of nocuous α-synuclein fibrils. In: Journal of Biomolecular Structure and Dynamics .

Chandrasekhar, I and Gaber, BP (1988) Stabilization of the bio-membrane by small molecules: interaction of trehalose with the phospholipid bilayer. In: Journal of Biomolecular Structure & Dynamics, 5 (6). 1163-&.

Chandrasekhar, I and Gaber, BP and Nagumo, M (1992) Lipid conformational nomenclature: a general method. In: Journal of Biomolecular Structure & Dynamics, 10 (1). pp. 239-251.

Chandrasekhar, Indira and Sasisekharan, V (1989) The nomenclature and conformational analysis of lipids and lipid analogs. In: Molecular and Cellular Biochemistry, 91 (1-2). pp. 173-182.

Chandrasekhar, K and Das, Manoj K and Kumar, Anil and Balaram, P (1988) Molecular conformation of alamethicin in dimethylsulfoxide solution A two-dimensional n.m.r. study. In: International Journal of Peptide & Protein Research, 32 (3). pp. 167-174.

Chatterjee, A and Yadav, S and Sikdar, SK and Kumar Selvaraja, S (2019) High-Speed Cavity Enhanced Silicon Photodetector on SiN-SOI Platform for Short Reach Optical Datacom. In: Workshop on Recent Advances in Photonics, WRAP 2019, 13-14 December 2019, Guwahati, India.

Chatterjee, Avijit and Sikdar, SujitKumar and Selvaraja, Shankar Kumar (2019) High-speed waveguide integrated silicon photodetector on a SiN-SOI platform for short reach datacom. In: OPTICS LETTERS, 44 (7). pp. 1682-1685.

Chatterjee, Bhaswati and Saha, Indranil and Raghothama, Srinivasarao and Aravinda, Subrayashastry and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Designed Peptides with Homochiral and Heterochiral Diproline Templates as Conformational Constraints. In: Chemistry - A European Journal, 14 (20). pp. 6192-6204.

Chatterjee, S and Ghosh, S and Vishveshwara, S (2013) Network properties of decoys and CASP predicted models: a comparison with native protein structures. In: Molecular BioSystems, 9 (7). pp. 1774-1788.

Chatterjee, S and Vasudev, PG and Ananda, K and Ananda, Kuppanna and Raghothama, Srinivasarao and Shamala, N and Balaram, Padmanabhan (2008) Multiple conformational states in crystals and in solution in alpha gamma hybrid peptides. Fragility of the C-12 helix in short sequences. In: Journal of Organic Chemistry, 73 (17). pp. 6595-6606.

Chatterjee, Sreejata and Sikdar, Sujit K (2013) Corticosterone Treatment Results in Enhanced Release of Peptidergic Vesicles in Astrocytes via Cytoskeletal Rearrangements. In: GLIA, 61 (12). pp. 2050-2062.

Chatterjee, Sreejata and Sikdar, Sujit K (2014) Corticosterone targets distinct steps of synaptic transmission via concentration specific activation of mineralocorticoid and glucocorticoid receptors. In: JOURNAL OF NEUROCHEMISTRY, 128 (4). pp. 476-490.

Chatterjee, Subhojyoti and Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2012) Network properties of protein-decoy structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 29 (6). pp. 606-622.

Chatterjee, Sunanda and Roy, Rituparna Sinha and Balaram, P (2007) Expanding the polypeptide backbone: hydrogen-bonded conformations in hybrid polypeptides containing the higher homologues of alpha-amino acids. In: JOURNAL OF THE ROYAL SOCIETY INTERFACE, 4 (15). pp. 587-606.

Chatterjee, Sunanda and Vasudev, Prema G and Ananda, Kuppanna and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Multiple Conformational States in Crystals and in Solution in \alpha\gamma Hybrid Peptides. Fragility of the $C_{12}$ Helix in Short Sequences. In: Journal of Organic Chemistry, 73 (17). pp. 6595-6606.

Chatterjee, Sunanda and Vasudev, Prema G and Raghothama, Srinivasarao and Ramakrishnan, Chandrasekharan and Shamala, Narayanaswamy and Balaram, Padmanabhan (2009) Expanding the Peptide beta-Turn in alpha gamma Hybrid Sequences: 12 Atom Hydrogen Bonded Helical and Hairpin Turns. In: Journal of the American Chemical Society, 131 (16). pp. 5956-5965.

Chatterjee, Sunanda and Vasudev, Prema G and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Solid State and Solution Conformations of a Hybrid $\alpha \gamma \alpha \alpha \gamma \alpha$ Hexapeptide. Characterization of a Backbone Expanded Analog of the $\alpha$-Polypeptide $3_{(10)}$-Helix. In: Biopolymers, 90 (6). pp. 759-771.

Chatterji, D (2021) Identifying gifted children. In: Current Science, 120 (6). p. 974.

Chatterji, Dipankar (2011) Biology teaching at IITs. In: CURRENT SCIENCE, 102 (6). p. 828.

Chatterji, Dipankar (2007) Embarrassment of the riches. In: Current Science, 93 (2). pp. 130-131.

Chatterji, Dipankar (2001) Genome and us. In: Current Science, 80 (7). p. 807.

Chatterji, Dipankar (2010) Is it necessary to do away with IIT-JEE? In: Current Science (Bangalore), 99 (8). p. 1000.

Chatterji, Dipankar (1999) 'Millennium' meetings. In: Current Science (Bangalore), 77 (8). p. 1011.

Chatterji, Dipankar (1999) Search for an individual in the midst of a crowd: Tracking a single molecule. In: Current Science, 76 (10). pp. 1295-1296.

Chatterji, Dipankar and Ogawa, Yoshito and Shimada, Tomohiro and Ishihama, Akira (2007) The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. In: FEMS Microbiology Letters, 267 (1). pp. 51-55.

Chatterji, Dipankar and Ojha, Anil Kumar (2001) Revisiting the stringent response, ppGpp and starvation signaling. In: Current Opinion in Microbiology, 4 (2). pp. 160-165.

Chatterji, Dipankar and Rajdev, Priya (2008) Macromolecular recognition at the air-water interface: application of Langmuir-Blodgett technique. In: Current Science, 95 (9). pp. 1226-1236.

Chatterji, Somnath and Jain, Sanjeev and Brahmachari, Samir K and Majumder, Partha and Reich, Theodore (1997) International collaboration in genetics research. In: Nature Genetics, 15 (2). 124-124 .

Chattopadhyay, G and Ahmed, S and Srilatha, NS and Asok, A and Varadarajan, R (2023) Ter-Seq: A high-throughput method to stabilize transient ternary complexes and measure associated kinetics. In: Protein Science, 32 (1).

Chattopadhyay, G and Bhasin, M and Ahmed, S and Priya Gosain, T and Ganesan, S and Das, S and Thakur, C and Chandra, N and Singh, R and Varadarajan, R (2022) Functional and Biochemical Characterization of the MazEF6 Toxin-Antitoxin System of Mycobacterium tuberculosis. In: Journal of Bacteriology, 204 (4).

Chattopadhyay, G and Bhowmick, J and Manjunath, K and Ahmed, S and Goyal, P and Varadarajan, R (2022) Mechanistic insights into global suppressors of protein folding defects. In: PLoS Genetics, 18 (8).

Chattopadhyay, Gopinath and Varadarajan, Raghavan (2019) Facile measurement of protein stability and folding kinetics using a nano differential scanning fluorimeter. In: PROTEIN SCIENCE, 28 (6). pp. 1127-1134.

Chattopadhyay, Tandrika and Singh, Rajiv Ranjan and Gupta, Sarika and Surolia, Avadhesha (2017) Bone morphogenetic protein-7 (BMP-7) augments insulin sensitivity in mice with type II diabetes mellitus by potentiating PI3K/AKT pathway. In: BIOFACTORS, 43 (2). pp. 195-209.

Chauhan, NK and Anand, A and Sharma, A and Dhiman, K and Gosain, TP and Singh, P and Singh, P and Khan, E and Chattopadhyay, G and Kumar, A and Sharma, D and Ashish, A and Sharma, TK and Singh, R (2023) Structural and Functional Characterization of Rv0792c from Mycobacterium tuberculosis: Identifying Small Molecule Inhibitor against HutC Protein. In: Microbiology Spectrum, 11 (1).

Chauhan, PK and Sowdhamini, R (2023) Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine–glycine-rich protein. In: Frontiers in Genetics, 14 .

Chauhan, PK and Sowdhamini, R (2022) Integrative network analysis interweaves the missing links in cardiomyopathy diseasome. In: Scientific Reports, 12 (1).

Chauhan, PK and Sowdhamini, R (2023) Transcriptome data analysis of primary cardiomyopathies reveals perturbations in arachidonic acid metabolism. In: Frontiers in Cardiovascular Medicine, 10 .

Chauhan, VS and Kaur, Paramjeet and Sen, Nirupa and Uma, K and Jacob, Jose and Balaram, P (1988) Conformational Analysis of an Active Chemotactic Peptide Analog Containing Z-dehydrophbnylalanine at Position 3. In: Tetrahedron, 44 (8). pp. 2359-2366.

Chauhan, VS and Sharma, AK and Uma, K and Paul, PKC and Balaram, Padmanabhan (1987) Conformations of dehydrophenylalanine containing peptides. NMR studies on three tripeptides with a central dehydrophenylalanyl residue. In: International Journal of Peptide and Protein Research, 29 (1). pp. 126-133.

Chauhan, VS and Uma, K and Kaur, Paramjeet and Balaram, P (1989) Conformations of dehydrophenylalanine containing peptides: nmr studies of an acyclic hexapeptide with two z-Phe residues. In: Biopolymers, 28 (3). pp. 763-771.

Chauhan, VS and Uma, K and Kaur, Paramjeet and Balaram, P (1989) Conformations of dehydrophenylalanine containing peptides: nmr studies of an acyclic hexapeptide with two delta Z-Phe residues. In: Biopolymers, 28 (3). pp. 763-771.

Chawla, Bhavna and Jhingran, Anupam and Singh, Sushma and Tyagi, Nidhi and Park, Myung Hee and Srinivasan, N and Roberts, Sigrid C and Madhubala, Rentala (2010) Identification and Characterization of a Novel Deoxyhypusine Synthase in Leishmania donovani. In: Journal of biological chemistry, 285 (1). pp. 453-463.

Chawla, Bhavna and Kumar, Ravi Ranjan and Tyagi, Nidhi and Subramanian, Gowri and Srinivasan, N and Park, Myung Hee and Madhubala, Rentala (2012) A Unique Modification of the Eukaryotic Initiation Factor 5A Shows the Presence of the Complete Hypusine Pathway in Leishmania donovani. In: PLos One, 7 (3).

Cheedarla, Narayanaiah and Hemalatha, Babu and Anangi, Brahmaiah and Muthuramalingam, Kannan and Selvachithiram, Murugesan and Sathyamurthi, Pattabiraman and Kailasam, Nandagopal and Varadarajan, Raghavan and Swaminathan, Soumya and Tripathy, Srikanth Prasad and Vaniambadi, S Kalyanaraman and Vadakkupattu, D Ramanathan and Hanna, Luke Elizabeth (2018) Evolution of Neutralization Response in HIV-1 Subtype C-Infected Individuals Exhibiting Broad Cross-Clade Neutralization of HIV-1 Strains. In: FRONTIERS IN IMMUNOLOGY, 9 .

Cheemanapalli, S and Palaniappan, C and Mahesh, Y and Iyyappan, Y and Yarrappagaari, S and Kanagaraj, S (2022) In vitro and in silico perspectives to explain anticancer activity of a novel syringic acid analog ((4-(1H-1, 3-benzodiazol-2-yl)-2, 6-dimethoxy phenol)) through apoptosis activation and NFkB inhibition in K562 leukemia cells. In: Computers in Biology and Medicine, 152 .

Chelladurai, R and Debnath, K and Jana, NR and Basu, JK (2022) Spontaneous formation and growth kinetics of lipid nanotubules induced by passive nanoparticles. In: Soft Matter .

Chellappan, S and Mathivanan, S and Thippeswamy, R and Nagesh, M and Savithri, HS and Murthy, MRN (2020) Crystal structure of oxalate decarboxylase from Photorhabdus luminescens, a symbiotic bacterium associated with entomopathogenic nematodes. In: Current Science, 119 (8). pp. 1349-1356.

Cheriyan, John and Kumar, Parimal and Mayadevi, Madhavan and Surolia, Avadhesha and Omkumar, Ramakrishnapillai V (2011) Calcium/Calmodulin Dependent Protein Kinase II Bound to NMDA Receptor 2B Subunit Exhibits Increased ATP Affinity and Attenuated Dephosphorylation. In: PLos One, 6 (3).

Chetnani, Bhaskar and Das, Satyabrata and Kumar, Parimal and Surolia, Avadhesha and Vijayan, M (2009) Mycobacterium tuberculosis pantothenate kinase: possible changes in location of ligands during enzyme action. In: Acta Crystallographica Section D-Biological Crystallography, 65 (Part 4). pp. 312-325.

Chetnani, Bhaskar and Kumar, Parimal and Abhinav, KV and Chhibber, Manmohan and Surolia, A and Vijayan, M (2011) Location and conformation of pantothenate and its derivatives in Mycobacterium tuberculosis pantothenate kinase: insights into enzyme action. In: Acta Crystallographica Section D, 67 (Part 9). pp. 774-783.

Chetnani, Bhaskar and Kumar, Parimal and Surolia, A and Vijayan, M (2010) M.tuberculosis Pantothenate Kinase: Dual Substrate Specificity and Unusual Changes in Ligand Locations. In: Journal of Molecular Biology, 400 (2). pp. 171-185.

Cheung, EY and McCabe, EE and Harris, KDM and Johnston, RL and Tedesco, E and Raja, KMP and Balaram, P (2002) C-H center dot center dot center dot O hydrogen bond mediated chain reversal in a peptide containing a \gamma-amino acid residue, determined directly from powder X-ray diffraction data. In: Wiley-Vch Verlag GmbH, 41 (3). pp. 494-496.

Cheung, Eugene Y and McCabe, Emma E and Harris, Kenneth DM and Johnston, Roy L and Tedesco, Emilio and Raja, Muruga Poopathi K and Balaram, Padmanabhan (2002) C-H…O Hydrogen Bond Mediated Chain Reversal in a Peptide Containing a gamma-Amino Acid Residue, Determined Directly from Powder X-ray Diffraction Data. In: Angewandte Chemie International Edition, 41 (3). pp. 494-496.

Cheung, Eugene Y and McCabe, Emma E and Kenneth, DM and Johnston, Roy L and Tedesco, Emilio and Muruga Poopathi Raja, K and Balaram, Padmanabhan (2002) C-Hâ€¦O hydrogen bond mediated chain reversal in a peptide containing g-amino acid residue, determined directly from powder X-ray diffraction data. In: Angewandte Chemie International Edition, 41 (3). pp. 494-496.

Chhajer, H and Rizvi, VA and Roy, R (2021) Life cycle process dependencies of positive-sense RNA viruses suggest strategies for inhibiting productive cellular infection. In: Journal of the Royal Society Interface, 18 (184).

Chhibber, Manmohan (2004) Potassium Fluoride on Alumina $(KF/Al_2O_3)$. In: Synlett (1). pp. 197-198.

Chhibber, Manmohan and Kumar, Gyanendra and Parasuraman, Prasanna and Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2006) Novel diphenyl ethers: Design, docking studies, synthesis and inhibition of enoyl ACP reductase of Plasmodium falciparum and Escherichia coli. In: Bioorganic & Medicinal Chemistry, 14 (23). pp. 8086-8098.

Chittoor, Swaminathan P and Nandi, Animesh and Visweswariah, Sandhya S and Surolia, Avadhesha (1999) Thermodynamic Analyses Reveal Role of Water Release in Epitope Recognition by a Monoclonal Antibody against the Human Guanylyl Cyclase C Receptor. In: Journal-of-Biological-Chemistry, 274 (44). pp. 31272-31278.

Chittori, Sagar and Savithri, HS and Murthy, MRN (2011) Crystal structure of Salmonella typhimurium 2-methylcitrate synthase: Insights on domain movement and substrate specificity. In: Journal of Structural Biology, 174 (1). pp. 58-68.

Chittori, Sagar and Savithri, HS and Murthy, MRN (2011) Preliminary X-ray crystallographic studies on acetate kinase (AckA) from Salmonella typhimurium in two crystal forms. In: Acta Crystallographica Section F, 67 (Part 1). pp. 1658-1661.

Chittori, Sagar and Savithri, Handanahal S and Murthy, Mathur RN (2012) Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface. In: BMC Structural Biology, 12 (24). pp. 1-15.

Chittori, Sagar and Simanshu, DK and Savithri, HS and Murthy, MRN (2010) Preliminary X-ray crystallographic analysis of 2-methylcitrate synthase from Salmonella typhimurium. In: Acta Crystallographica Section F, 66 (Part 4). pp. 467-470.

Chittori, Sagar and Simanshu, Dhirendra K and Savithri, HS and Murthy, MRN (2007) Structure of the putative mutarotase YeaD from Salmonella typhimurium in two different forms: in vivo binding of a sugar phosphate. In: Acta Crystallographica Section D Biological Crystallography, 63 (2). pp. 197-205.

Chittori, Sagar and Simanshu, Dhirendra K and Savithri, HS and Murthy, MRN (2007) Structure of the putative mutarotase YeaD from Salmonella typhimurium: structural comparison with galactose mutarotases. In: Acta Crystallographica Section D- Biological Crystallography, 63 (2). pp. 197-205.

Chittori, Sagar and Simanshu, Dhirendra Kumar and Banerjee, Sanchari and Murthy, Ambika Mosale Venkatesh and Mathivanan, Subashini and Savithri, Handanahal Subbarao and Murthy, Mathur Ramabhadrashastry Narasimha (2013) Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): Insights from kinetic and crystallographic studies. In: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1834 (10). pp. 2036-2044.

Choudhry, Shweta and Mukerji, Mitali and Srivastava, Achal K and Jain, Satish and Brahmachari, Samir K (2001) CAG repeat instability at SCA2 locus: anchoring CAA interruptions and linked single nucleotide polymorphisms. In: Human Molecular Genetics, 10 (21). pp. 2437-2446.

Choudhury, Nasreen and Sikdar, Sujit Kumar (2018) 17 beta-estradiol potentiates TREK1 channel activity through G protein-coupled estrogen receptor. In: JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY, 183 . pp. 94-105.

Chowdhury, Rakhi Pait and Gupta, Surbhi and Chatterji, Dipankar (2007) Identification and Characterization of the dps Promoter of Mycobacterium smegmatis: Promoter Recognition by Stress-Specific Extracytoplasmic Function Sigma Factors $ \sigma ^H$ and $ \sigma ^{F \bigtriangledown }$. In: Journal of Bacteriology, 189 (24). p. 8973.

Chowdhury, Rakhi Pait and Vijayabaskar,, MS and Vishveshwara, Saraswathi and Chatterji, Dipankar (2008) Molecular Mechanism of in Vitro oligomerization of Dps from Mycobacterium smegmatis:mutations of the residues identified by Interface Cluster analysis. In: Biochemistry, 47 (42). pp. 11110-11117.

Chowdhury, Rakhi Pait and Chatterji, Dipankar (2007) Estimation of Forster's distance between two ends of Dps protein from mycobacteria: Distance heterogeneity as a function of oligomerization and DNA binding. In: Biophysical Chemistry, 128 (1). pp. 19-29.

Chowdhury, Rakhi Pait and Saraswathi, Ramachandran and Chatterji, Dipankar (2010) Mycobacterial Stress Regulation: The Dps ``Twin Sister'' Defense Mechanism and Structure-Function Relationship. In: IUBMB Life, 62 (1). pp. 67-77.

Chowdhury, S and Bansal , M (2001) A nanosecond molecular dynamics study of antiparallel d(G)(7) quadruplex structures: Effect of the coordinated cations. In: Journal of Biomolecular Structure & Dynamics, 18 (5). pp. 647-669.

Chowdhury, Shibasish and Bansal, Manju (2000) Effect of coordinated ions on structure and flexibility of parallel G-quadruplexes: A molecular dynamics study. In: Journal of Biomolecular Structure & Dynamics, 18 (1). pp. 11-28.

Chowdhury, Shibasish and Bansal, Manju (2001) G-quadruplex structure can be stable with only some coordination sites being occupied by cations: A six-nanosecond molecular dynamics study. In: Journal Of Physical Chemistry B, 105 (31). pp. 7572-7578.

Chowdhury, Shibasish and Bansal, Manju (2000) Effect of coordinated ions on structure and flexiblity of parallel G-quandruplexes: a molecular dynamics study. In: Journal of Biomolecular Structure & Dynamics, 18 (1). pp. 11-28.

Chowdhury, Shibasish and Bansal, Manju (2001) Modelling studies on neurodegenerative disease causing triplet repeat sequences d(CGG/GCC) and d(CAG/CTG): Duplexes vs Quadruplexes. In: Journal of Biosciences, 26 (5). pp. 649-665.

Cieplak, Marek and Vishveshwara, Saraswathi and Banavar, Jayanth R (1996) Cell Dynamics of Model Proteins. In: Physical Review Letters, 77 (17). pp. 3681-3684.

Clavel, Caroline and Canales, Angeles and Gupta, Garima and Canada, Javier F and Penades, Soledad and Surolia, Avadhesha and Jimenez, Jesus B (2007) NMR Investigation of the Bound Conformation of Natural and Synthetic Oligomannosides to Banana Lectin. In: European Journal of Organic Chemistry, 2007 (10). pp. 1577-1585.

Clavel, Caroline and Canales, Angeles and Gupta, Garima and Santos, Ignacio J and Cañada, Javier F and Penadés, Soledad and Surolia, Avadesha and Jiménez-Barbero, Jesús (2007) NMR studies on the conformation of oligomannosides and their interaction with banana lectin. In: Glycoconjugate Journal, 24 (8). pp. 449-464.

Clemens, AM and Fernandez Delgado, Y and Mehlman, ML and Mishra, P and Brecht, M (2018) Multisensory and Motor Representations in Rat Oral Somatosensory Cortex. In: Scientific Reports, 8 (1).

Conrad, Michael and Brahmachari, SK and Sasisekharan, V (1986) DNA structural variability as a factor in gene expression and evolution. In: Biosystems, 19 (2). pp. 123-126.

Craveur, P and Narwani, TJ and Srinivasan, N and Gelly, J-C and Rebehmed, J and De Brevern, AG (2021) Shaking the β-Bulges. In: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (1). pp. 14-18.

Crisma, M and Fasman, GD and Balaram, H and Balaram, Padmanabhan (1984) Peptide models for b-turns.A circular dichroism study. In: International Journal of Peptide and Protein Research, 23 (4). pp. 411-419.

Crisma, M and Valle, G and Toniolo, C and Prasad, S and Rao, RB and Balaram, P (1995) Beta-Turn Conformations In Crystal-Structures Of Model Peptides Containing Alpha,Alpha-Di-N-Propylglycine And Alpha,Alpha-Di-N-Butylglycine. In: Biopolymers, 35 (1). pp. 1-9.

Crisma, Marco and Formaggio, Fernando and Aleman, Carlos and Torras, Joan and Ramakrishnan, Chandrasekharan and Kalmankar, Neha and Balaram, Padmanabhan and Toniolo, Claudio (2018) The fully-extended conformation in peptides and proteins. In: PEPTIDE SCIENCE, 110 (5, SI).

D

Dam, Tarun K and Bachhawat, Kiran and Rani, Geetha P and Surolia, Avadhesha (1998) Garlic (Allium sativum) Lectins Bind to High Mannose Oligosaccharide Chains. In: Journal of Biological Chemistry, 273 (10). pp. 5528-5535.

Damodaran, Deepa and Jeyakani, Justin and Chauhan, Alok and Kumar, Nirmal and Chandra, Nagasuma R and Surolia, Avadhesha (2008) CancerLectinDB: a database of lectins relevant to cancer. In: Glycoconjugate Journal, 25 (3). pp. 191-198.

Dani, Vardhan S and Ramakrishnan, C and Varadarajan, Raghavan (2003) MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins. In: Protein Engineering,, 16 (3). pp. 187-193.

Das, Anindita and Chakrabarti, Abhijit and Das, Puspendu K (2017) Enzyme Adsorption on Nanoparticle Surface Probed by Highly Sensitive Second Harmonic Light Scattering. [Book Chapter]

Das, Anindita and Narayanan, Rishikesh (2015) Active dendrites mediate stratified gamma-range coincidence detection in hippocampal model neurons. In: JOURNAL OF PHYSIOLOGY-LONDON, 593 (16). pp. 3549-3576.

Das, Anindita and Narayanan, Rishikesh (2017) Theta-frequency selectivity in the somatic spike-triggered average of rat hippocampal pyramidal neurons is dependent on HCN channels. In: JOURNAL OF NEUROPHYSIOLOGY, 118 (4). pp. 2251-2266.

Das, Anindita and Narayanan, Rishikesh R (2014) Active Dendrites Regulate Spectral Selectivity in Location-Dependent Spike Initiation Dynamics of Hippocampal Model Neurons. In: JOURNAL OF NEUROSCIENCE, 34 (4). pp. 1195-1211.

Das, Anindita and Rathour, Rahul K and Narayanan, Rishikesh (2017) Strings on a Violin: Location Dependence of Frequency Tuning in Active Dendrites. In: FRONTIERS IN CELLULAR NEUROSCIENCE, 11 .

Das, Anindya and Sood, AK and Maiti, Prabal K and Das, Mili and Varadarajan, R and Rao, CNR (2008) Binding of nucleobases with single-walled carbon nanotubes: Theory and experiment. In: Chemical Physics Letters, 453 (4-6). pp. 266-273.

Das, C and Nayak, V and Balaram, P and Raghothama, S (2000) Synthetic protein design: construction of a four-stranded $\beta$-sheet structure and evaluation of its integrity in methanol-water systems. In: Journal of Peptide Research, 56 (5). pp. 307-317.

Das, Chittaranjan and Naganagowda, GA and Karle, Isabella L and Balaram, P (2001) Designed beta-Hairpin Peptides with Defined Tight Turn Stereochemistry. In: Biopolymers, 58 (3). pp. 335-346.

Das, Chittaranjan and Raghothama, S and Balaram, P (1998) A Designed Three Stranded beta-Sheet Peptide as a Multiple beta-Hairpin Model. In: Journal of the American Chemical Society, 120 (23). pp. 5812-5813.

Das, Chittaranjan and Raghothama, S and Balaram, P (1999) A four stranded beta-sheet structure in a designed, synthetic polypeptide. In: Chemical Communications (11). pp. 967-968.

Das, Chittaranjan and Shankaramma, Channaveerappa S and Balaram, Padmanabhan (2001) Molecular Carpentry: Piecing Together Helices and Hairpins in Designed Peptides. In: Chemistry - A European Journal, 7 (4). pp. 840-847.

Das, DR and Sarkar, M and Paul, A (2023) Tools and approaches for assessing stress-responsive secondary metabolites to design climate-smart crops. [Book Chapter]

Das, M and Sreedharan, S and Shee, S and Malhotra, N and Nandy, M and Banerjee, U and Kohli, S and Rajmani, RS and Chandra, N and Seshasayee, ASN and Laxman, S and Singh, A (2023) Cysteine desulfurase (IscS)â��mediated fine-tuning of bioenergetics and SUF expression prevents Mycobacterium tuberculosis hypervirulence. In: Science Advances, 9 (50).

Das, MK and Basu, A and Balaram, P (1985) Effects of membrane channel-forming polypeptides on mitochondrial oxidative phosphorylation. A comparison of alamethicin, gramicidin A, melittin and tetraacetyl melittin. In: Biochemistry International, 11 (3). 357 -363.

Das, Manasmita and Bandyopadhyay, Debarati and Mishra, Debasish and Datir, Satyajit and Dhak, Prasanta and Jain, Sanyog and Maiti, Tapas Kumar and Basak, Amit and Pramanik, Panchanan (2011) ``Clickable'', Trifunctional Magnetite Nanoparticles and Their Chemoselective Biofunctionalization. In: Bioconjugate Chemistry, 22 (6). pp. 1181-1193.

Das, Manasmita and Bandyopadhyay, Debarati and Mishra, Debasish and Datir, Satyajit and Dhak, Prasanta and Jain, Sanyog and Maiti, Tapas Kumar and Basak, Amit and Pramanik, Panchanan (2015) ``Clickable'', Trifunctional Magnetite Nanoparticles and Their Chemoselective Biofunctionalization (vol 22, pg 1181, 2011). In: BIOCONJUGATE CHEMISTRY, 26 (9). p. 1981.

Das, Manasmita and Bandyopadhyay, Debarati and Singh, Raman Preet and Harde, Harshad and Kumar, Sunil and Jain, Sanyog (2012) Orthogonal biofunctionalization of magnetic nanoparticles via ``clickable'' poly(ethylene glycol) silanes: a ``universal ligand'' strategy to design stealth and target-specific nanocarriers. In: JOURNAL OF MATERIALS CHEMISTRY, 22 (47). pp. 24652-24667.

Das, Manoj K and Balaram, P (1984) Interactions of the channel forming peptide alamethicin with artificial and natural membranes. In: Journal of Biosciences, 6 (4). pp. 337-348.

Das, Manoj K and Vithayathil, Paul J and Balaram, P (1977) Stabilization of Enzyme Structures by Inhibitors: A Nuclear Magnetic Resonance Study of the Effect of Phosphate on the Acid Unfolding of Ribonuclease A. In: International Journal of Peptide and Protein Research, 10 . pp. 9-16.

Das, Mili and Kobayashi, Masanori and Yamada, Yusuke and Sreeramulu, Sridhar and Ramakrishnan, C and Wakatsuki, Soichi and Kato, Ryuichi and Varadarajan, Raghavan (2007) Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts. In: Journal of Molecular Biology, 372 (5). pp. 1278-1292.

Das, Mili and Rao, Bharathi Vasudeva and Ghosh, Sanjukta and Varadarajan, Raghavan (2005) Attempts to Delineate the Relative Contributions of Changes in Hydrophobicity and Packing to Changes in Stability of Ribonuclease S Mutants. In: Biochemistry, 44 (15). pp. 5923-5930.

Das, Mrinmoy and Bhosale, Manoj and Wadhwa, Nitin and Ahmed, Syed M and Bhaskarla, Chetana and Kumar, Anujith and Srinivasan, Narayanaswamy and Nandi, Dipankar (2016) Importance of Amino Acids, Gln-119 and Tyr-376, in the S1 Pocket of Escherichia coli Peptidase N in Determining Substrate Specificity. In: PROTEIN AND PEPTIDE LETTERS, 23 (6). pp. 548-561.

Das, R and Datta, R and Varadarajan, R (2020) Probing the Structure of the HIV-1 Envelope Trimer Using Aspartate Scanning Mutagenesis. In: Journal of Virology, 94 (21).

Das, S and Bansal, M (2019) Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters. In: PLoS ONE, 14 (3).

Das, S and Maras, J S and Hussain, S and Sudarshan, C and Shastry, S M and Sharma, S K and Balaram, P and Sarin, S K (2016) MOLECULAR ELLIPTICITY OF CIRCULATING ALBUMIN-BILIRUBIN COMPLEX IS A RELIABLE PROGNOSTIC MEASURE OF SEVERITY OF ACUTE ON CHRONIC LIVER FAILURE (ACLF). In: JOURNAL OF HEPATOLOGY, 64 (2). S242-S243.

Das, Satyabrata and Kumar, Parimal and Bhor, Vikrant and Surolia, A and Vijayan, M (2005) Expression, purification, crystallization and preliminary X-ray crystallographic analysis of pantothenate kinase from Mycobacterium tuberculosis. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (Part 1). pp. 65-67.

Das, Satyabrata and Kumar, Parimal and Bhor, Vikrant and Surolia, A and Vijayan, M (2006) Invariance and variability in bacterial PanK: a study based on the crystal structure of Mycobacterium tuberculosis PanK. In: Acta Crystallographica Section D-Biological Crystallography, 62 (6). pp. 628-638.

Das, Soma and Mullick, Ranajoy and Kumar, Anuj and Tandon, Himani and Bose, Mihika and Gouthamchandra, K and Chandra, Madhavi and Ravishankar, Bagepally and Khaja, M N and Srinivasan, Narayanaswamy and Das, Saumitra and Subbarao, Shaila Melkote and Karande, Anjali Anoop (2017) Identification of a novel epitope in the C terminus of hepatitis C virus-E2 protein that induces potent and cross-reactive neutralizing antibodies. In: JOURNAL OF GENERAL VIROLOGY, 98 (5). pp. 962-976.

Das , MK and Krishna, K and Balaram, P (1988) Membrane Modifying Activity Of 4 Peptide Components Of Antiamebin, A Microheterogeneous Fungal Antibiotic. In: Indian Journal of Biochemistry & Biophysics, 25 (6). pp. 560-565.

Dasgupta, Dipak and Howard, Frank B and Sasisekharan, V and Miles, Todd H (1990) Drug-DNA binding specificity: Binding of netropsin and distamycin to $poly(d2NH_2A-dT)$. In: Biopolymers, 30 (1-2). pp. 223-227.

Dasgupta, Anjan Kumar (1979) Thermodynamic implication of the special relativistic postulate. In: Mechanics Research Communications, 6 (6). pp. 339-342.

Dasgupta, Debanjan and Sikdar, Sujit Kumar (2014) Calcium Permeable AMPA Receptor-Dependent Long Lasting Plasticity of Intrinsic Excitability in Fast Spiking Interneurons of the Dentate Gyrus Decreases Inhibition in the Granule Cell Layer. In: HIPPOCAMPUS, 25 (3). pp. 269-285.

Dasgupta, Debanjan and Sikdar, Sujit Kumar (2019) Heterogeneous network dynamics in an excitatory-inhibitory network model by distinct intrinsic mechanisms in the fast spiking interneurons. In: BRAIN RESEARCH, 1714 . pp. 27-44.

Dasgupta, Dipak and Parrack, PradipKumar and Sasisekharan, V (1987) Interaction of Synthetic Analogs of Distamycin with Poly(dA-dT): Role of the Conjugated N-Methylpyrrole System. In: Biochemistry, 26 (20). pp. 6381-6386.

Dasgupta, Dipak and Rajagopalan, Malini and Sasisekharan, V (1986) DNA-Binding Characteristics of a Synthetic Analog of Distamycin. In: Biochemical and Biophysical Research Communications, 140 (2). pp. 626-631.

Dasgupta, Nandita and Ranjan, Shivendu and Patra, Dhabaleswar and Srivastava, Priyanka and Kumar, Ashutosh and Ramalingam, Chidambaram (2016) Bovine serum albumin interacts with silver nanoparticles with a ``side on'' or ``end on'' conformation. In: CHEMICO-BIOLOGICAL INTERACTIONS, 253 . pp. 100-111.

Datta, S and Shamala, N and Banerjee, A and Balaram, P (1997) Hydrogen bonding in peptide helices - Analysis of two independent helices in the crystal structure of a peptide Boc-Val-Ala-Leu-Aib-Val-Ala-Phe-OMe. In: Journal Of Peptide Research, 49 (6). pp. 604-611.

Datta, S and Shamala, N and Gurunath, R and Balaram, P (1996) Observation of a mixed antiparallel and parallel beta-sheet motif in the crystal structure of Boc-Ala-Ile-Aib-OMe. In: International Journal of Peptide & Protein Research, 48 (3). pp. 209-214.

Datta, Saumen and Rathore, RNS and Vijayalakshmi, S and Vasudev, Prema G and Rao, Balaji R and Balaram, P and Shamala, N (2004) Peptide helices with pendant cycloalkane rings. Characterization of conformations of 1-aminocyclooctane-1 carboxylic acid $(Ac_8c)$ residues in peptides. In: Journal of Peptide Science, 10 (3). pp. 160-172.

Datta, R and Chowdhury, RR and Manjunath, K and Hanna, LE and Varadarajan, R (2020) A facile method of mapping HIV-1 neutralizing epitopes using chemically masked cysteines and deep sequencing. In: Proceedings of the National Academy of Sciences of the United States of America, 117 (47). pp. 29584-29594.

Datta, S and Biswal, BK and Vijayan, M (2001) The effect of stabilizing additives on the structure and hydration of proteins: a study involving tetragonal lysozyme. In: Acta Crystallographica Section D, 57 . pp. 1614-1620.

Datta, S and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2003) Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition. In: Proteins: Structure, Function, and Genetics, 50 . pp. 474-485.

Datta, S and Krishna, R and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2003) Crystal Structures of Mycobacterium smegmatis RecA and Its Nucleotide Complexes. In: Journal of Bacteriology, 185 . pp. 4280-4284.

Datta, S and Prabu, MM and Vaze, MB and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2000) Crystal Structures of Mycobacterium tuberculosis RecA and its complex ADP-AIF-4: implications for decreased ATPase activity and molecular aggregation. In: Nucleic Acids Research, 28 (24). pp. 4964-4973.

Datta, Saumen and Kaul, Ramesh and Rao, Balaji R and Shamala, N and Balaram, P (1997) Stereochemistry of linking segments in the design of helix–helix motifs in peptides. Crystallographic comparison of a glycyl–dipropylglycyl–glycyl segment in a tripeptide and a 14-residue peptide. In: Journal of Chemical Society, Perkin Transactions 2 (9). pp. 1659-1664.

Datta, Saumen and Shamala, N and Banerjee, Arindam and Balaram, P (1997) Conformational variability of Gly-Gly segments in peptides: A comparison of the crystal structures of an acyclic pentapeptide and an octapeptide. In: Biopolymers, 41 . pp. 331-336.

Datta, Saumen and Shamala, N and Banerjee, Arindam and Pramanik, Animesh and Bhattacharjya, Surajit and Balaram, P (1997) Characterization of Helix Terminating Schellman Motifs in Peptides. Crystal Structure and Nuclear Overhauser Effect Analysis of a Synthetic Heptapeptide Helix. In: Journal of the American Chemical Society, 119 (39). pp. 9246-9251.

Datta, Saumen and Uma, Manjappara V and Shamala, N and Balaram, P (1999) Stereochemistry of Schellman Motifs in Peptides: Crystal Structure of a Hexapeptide with a C-Terminus 6 – 1 Hydrogen Bond. In: Biopolymers, 50 (1). pp. 13-22.

David, SA and Awasthi, Satish Kumar and Wiese, A and Ulmer, AJ and Lindner, B and Brandenburg, K and Seydel, U and Rietschel, ETh and Sonesson, A and Balaram, Padmanabhan (1996) Characterization of the interactions of a polycationic, amphiphilic, terminally branched oligopeptide with lipid A and lipopolysaccharide from the deep rough mutant of Salmonella minnesota. In: Journal of Endotoxin Research, 3 (5). 369 -379.

David, SA and Balaram, P and Mathan, VI (1995) Characterization of the interaction of lipid A and lipopolysaccharide with human serum albumin: implications for an endotoxin carrier function for albumin. In: Journal of Endotoxin Research, 20 (2). pp. 99-106.

David, SA and Balaram, P and Mathan, VI (1993) Interaction of basic amphiphilic polypeptide antimicrobials, Gramicidin S, Tyrocidin and Efrapeptin, with endotoxic lipid A. In: Medical Microbiology Letters, 2 (1). pp. 42-47.

David, SA and Balasubramanian, KA and Mathan, VI and Balaram, P (1992) Analysis of the binding of polymyxin B to endotoxic lipid A and core glycolipid using a fluorescent displacement probe. In: Biochimica et Biophysica Acta (BBA), 1165 (2). pp. 147-152.

David, SA and Mathan, VI and Balaram, P (1995) Interactions of linear dicationic molecules with lipid A: structural requisites for optimal binding affinity. In: Journal of Endotoxin Research, 2 (5). pp. 325-336.

David, SA and Mathan, VI and Balaram, Padmanabhan (1992) Interaction of melittin with endotoxic lipid. In: Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism, 1123 (3). 269-274 .

De, Subhajyoti and Krishnadev, O and Srinivasan, N and Rekha, N (2005) Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different. In: BMC Structural Biology, 5 . pp. 1-16.

Deam, S and Srinivasan, N and Westby, J and Horn, EH and Dolan, G (2001) F X Nottingham and F X Taunton two novel mutations in factor X resulting in loss of functional activity and an interpretation using molecular modelling. In: Thrombosis And Haemostasis, 85 (29). pp. 265-269.

Deb, Dhruba and Vishveshwara, Saraswathi and Vishveshwara, Smitha (2009) Understanding Protein Structure from a Percolation Perspective. In: Biophysical Journal, 97 (6). pp. 1787-1794.

Deepa, R and Jagannath, MR and Kesavulu, MM and Rao, Durga C and Suguna, K (2004) Expression, purification, crystallization and preliminary crystallographic analysis of the diarrhoea-causing and virulence-determining region of rotaviral nonstructural protein NSP4. In: Acta Crystallographica Section D: Biological Crystallography, 60 (1). pp. 135-136.

Deepa, R and Rao, Durga C and Suguna, K (2007) Structure of the extended diarrhea-inducing domain of rotavirus enterotoxigenic protein NSP4. In: Archives of Virology, 152 (5). pp. 847-859.

Deka, G and Benazir, JF and Kalyani, JN and Savithri, HS and Murthy, MRN (2016) Structural and Biochemical Investigations on the Catalytic Mechanism of Pyridoxal Kinase (PdxK) from Salmonella Typhimurium and its Interactions with PLP-Dependent Enzymes. In: BIOPHYSICAL JOURNAL, 110 (3, 1). 548A.

Deka, G and Bharath, SR and Savithri, HS and Murthy, MRN (2017) Structural studies on the decameric S. typhimurium arginine decarboxylase (ADC): Pyridoxal 5'-phosphate binding induces conformational changes. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 490 (4). pp. 1362-1368.

Deka, G and Bisht, S and Savithri, HS and Murthy, MRN (2018) Comparative structural and enzymatic studies on Salmonella typhimurium diaminopropionate ammonia lyase reveal its unique features. In: Journal of Structural Biology, 202 (2). pp. 118-128.

Deka, G and Kalyani, JN and Benazir, JF and Savithri, HS and Murthy, MRN (2014) Successful data recovery from oscillation photographs containing strong polycrystalline diffraction rings from an unknown small-molecule contaminant: preliminary structure solution of Salmonella typhimurium pyridoxal kinase (PdxK). In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 70 (4). pp. 526-529.

Deka, Geeta and Bharath, Sakshibeedu R and Savithri, Handanhal Subbarao and Murthy, Mathur Ramabhadrashastry Narasimha (2018) Structural and biochemical studies on the role of active site Thr166 and Asp236 in the catalytic function of D-Serine deaminase from Salmonella typhimurium. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 504 (1). pp. 40-45.

Deka, Geeta and Kalyani, Josyula N and Jahangir, Fathima Benazir and Sabharwal, Pallavi and Savithri, Handanahal S and Murthy, Mathur R N (2019) Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate. In: FEBS JOURNAL, 286 (18). pp. 3684-3700.

Dennis, Megan K and Mantegazza, Adriana R and Snir, Olivia L and Tenza, Daniele and Acosta-Ruiz, Amanda and Delevoye, Cedric and Zorger, Richard and Sitaram, Anand and de Jesus-Rojas, Wilfredo and Ravichandran, Keerthana and Rux, John and Sviderskaya, Elena V and Bennett, Dorothy C and Raposo, Graca and Marks, Michael S and Setty, Subba Rao Gangi (2015) BLOC-2 targets recycling endosomal tubules to melanosomes for cargo delivery. In: JOURNAL OF CELL BIOLOGY, 209 (4). pp. 563-577.

Deo, Raunaq and Kushwah, Manish S and Kamerkar, Sukrut C and Kadam, Nagesh Y and Dar, Srishti and Babu, Kavita and Srivastava, Anand and Pucadyil, Thomas J (2018) ATP-dependent membrane remodeling links EHD1 functions to endocytic recycling. In: NATURE COMMUNICATIONS, 9 .

Deshmukh, A and Gopal, B (2020) Structural insights into the catalytic mechanism of Bacillus subtilis BacF. In: Acta Crystallographica Section F: Structural Biology Communications, 76 . pp. 145-151.

Deshmukh, Krupa and Anamika, Krishanpal and Srinivasan, Narayanaswamy (2010) Evolution of domain combinations in protein kinases and its implications for functional diversity. In: Progress in Biophysics and Molecular Biology, 102 (1). pp. 1-15.

Dev, Sagarika and Khan, RH and Surolia, Avadhesha (2006) 2,2,2-Trifluoroethanol-Induced Structural Change of Peanut Agglutinin at Different pH: A Comparative Account. In: IUBMB Life (International Union of Biochemistry and Molecular Biology: Life), 58 (8). pp. 473-479.

Dev, Sagarika and Nirmala, Devi K and Sinha, Sharmistha and Surolia, Avadhesha (2006) Thermodynamic analysis of three state denaturation of Peanut Agglutinin. In: IUBMB Life, 58 (9). pp. 549-555.

Dev, Sagarika and Surolia, Avadhesha (2006) Dynamic light scattering study of peanut agglutinin: Size, shape and urea denaturation. In: Journal of Biosciences, 31 (5). pp. 551-556.

Devarajan, S and Nair, CMK and Easwaran, KRK and Vijayan, M (1980) A novel conformation of valinomycin in its barium complex. In: Nature, 286 . 640 -641.

Devarajan, S and Easwaran, KRK (1981) A Circular Dichroism Study of Valinomycin Barium Ion Complex. In: Biopolymers, 20 (5). pp. 891-899.

Devarajan, S and Easwaran, KRK (1984) Conformational characterisation of valinomycin complexation with barium salts:A nuclear magnetic resonance spectroscopic study. In: Journal of bioscience, 6 (1). pp. 1-16.

Dey, Abhinav and Verma, Amit Kumar and Chatterji, Dipankar (2011) Molecular insights into the mechanism of phenotypic tolerance to rifampicin conferred on mycobacterial RNA polymerase by MsRbpA. In: Microbiology, 157 (Part 7). pp. 2056-2071.

Dey, Abhinav and Verma, Amit Kumar and Chatterji, Dipankar (2010) Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin. In: Microbiology, 156 (Part 3). pp. 873-883.

Dey, D and Dhar, D and Das, S and Maulik, A and Basu, S (2022) Structural and functional implications of leucine-rich repeats in toll-like receptor1 subfamily. In: Journal of Biosciences, 47 (4).

Dey, Supriya and Basuroy, Krishnayan and Jayaraman, N (2014) Dense network of O-H ... O and C-H ... O interactions in the solid state structure of n-pentyl-2-chloro-2-deoxy-alpha-D-manno-sept 3-uloside. In: CARBOHYDRATE RESEARCH, 393 . pp. 37-42.

Dey, Supriya and Basuroy, Krishnayan and Jayaraman, N (2015) Solid state structure of p-bromo phenyl 4,5,7-tri-O-benzyl-beta-D-glycero-D-talo-septanoside and an analysis of non-covalent interactions. In: CARBOHYDRATE RESEARCH, 410 . pp. 9-14.

Dhanaraj, V and Patanjali, SR and Surolia, A and Vijayan, M (1988) Preparation and preliminary X-ray studies of two crystal forms of the anti-T lectin from jackfruit (Artocarpus integrifolia). In: Journal of Molecular Biology, 203 (4). pp. 1135-1136.

Dhanaraj, V and Vijayan, M (1983) Structural studies of analgesics and their interactions .10. A hydrated 1-1 complex between niflumic acid and ethanolamine, c13h8f3n2o-2.c2h8no+.h2o. In: Acta Crystallographica Section C: Crystal Structure Communications, 39 (10). pp. 1398-1401.

Dhanaraj, V and Vijayan, M (1988) Structural studies of analgesics and their interactions. XII. Structure and interactions of anti-inflammatory fenamates. A concerted crystallographic and theoretical conformational study. In: Acta Crystallographica Section B, 44 . 406 -412.

Dhanaraj, V and Vijayan, M (1987) Structure of 4-Hydroxymonophenylbutazone. In: Acta Crystallographica Section C, 43 (2). pp. 311-313.

Dhanaraj, V and Vijayan, M (1983) A hydrated 1:1 Complex between Niflumic Acid and Ethanolamine, $C_{13}H_8F_3N_2O_2^-.C_2H_8NO^+.H_2O$. In: Acta Crystallographica Section C: Crystal Structure Communications, 39 (10). pp. 1398-1401.

Dhanaraj, Venugopal and Vijayan, Mamannamana (1987) Crystal structures of 1:1 complexes of meclofenamic acid with choline and ethanolamine. In: Biochimica et Biophysica Acta (BBA) - General Subjects, 924 (1). pp. 135-146.

Dhar, Gopa and Chakravarty, Devlina and Hazra, Joyita and Dhar, Jesmita and Poddar, Asim and Pal, Mahadeb and Chakrabarti, Pinak and Surolia, Avadhesha and Bhattacharyya, Bhabatarak (2015) Actin-Curcumin Interaction: Insights into the Mechanism of Actin Polymerization Inhibition. In: BIOCHEMISTRY, 54 (4). pp. 1132-1143.

Dharmaprakash, MS and Thamotharan, S and Neelgund, Gururaj M and Shivashankar, SA (2006) Tris(tert-butyl 3-oxobutanoato-$k^2O^1,O^3$)-aluminium(III) at 153 K. In: Acta Crystallographica Section E: Structure Reports Online, 62 (3). m434-m436.

Dharmaprakash, MS and Thamotharan, Subbiah and Neelgund, GM and Shivashankar, SA (2006) Tris(tert-butyl 3-oxobutanoato-kappa O-2(1),O- )-aluminium(III) at 153 K. In: Acta Crystallographica Section E-Structure Reports Online, 62 (Part 3). M434-M436.

Dhupia, Neha and Rathour, Rahul K and Narayanan, Rishikesh (2015) Dendritic atrophy constricts functional maps in resonance and impedance properties of hippocampal model neurons. In: Frontiers in Cellular Neuroscience, 8 .

Dickerson, RE and Bansal, Manju (1989) Definitions and nomenclature of nucleic acid structure parameters. In: EMBO Journal, 8 (1). pp. 1-4.

Dighe, Anasuya and Chandra, Nagasuma and Vishveshwara, Saraswathi and Ananthasuresh, GK (2015) Dissecting Ligand Binding Sites : A Layer at a Time. In: BIOPHYSICAL JOURNAL, 108 (2, 1). 216A.

Dinesh, Bhimareddy and Basuroy, Krishnayan and Shamala, Narayanaswamy and Balaram, Padmanabhan (2012) Structural characterization of folded pentapeptides containing centrally positioned beta(R)Val, gamma(R)Val and gamma(S)Val residues. In: TETRAHEDRON, 68 (23). pp. 4374-4380.

Dinesh, Bhimareddy and Vinaya, Vishwanathan and Raghothama, Srinivasarao and Balaram, Padmanabhan (2013) C12-Helix development in ()n sequences - spectroscopic characterization of Boc-Aib-4(R)Val]-OMe oligomers. In: European Journal of Organic Chemistry (17). pp. 3590-3596.

Dinesha, KV and Iyer, Suman B and Vishveshwara, Saraswathi (1986) Energy expressions for atomic configurations in the L-S coupling scheme. In: International Journal of Quantum Chemistry, 30 (6). pp. 783-790.

Divakar, S (1989) Determination of distances of sugar protons from Mn2+ in concanavalin A. In: Indian J Biochem Biophys, 26 (3). pp. 190-195.

Divakar, S and Easwaran, KRK (1987) Conformational studies of A23187 with mono-, di- and trivalent metal ions by circular dichroism spectroscopy. In: Biophysical Chemistry, 27 (2). pp. 139-147.

Divakar, S and Vasudevachari, MB and Antony, A and Easwaran, KRK (1987) Studies on the Interaction of Cupric Isonicotinohydrazide with DNA. In: Biochemistry, 26 (13). pp. 3781-3785.

Dixit, K and Karanth, NM and Nair, S and Kumari, K and Chakrabarti, KS and Savithri, HS and Sarma, SP (2020) Aromatic Interactions Drive the Coupled Folding and Binding of the Intrinsically Disordered Sesbania mosaic Virus VPg Protein. In: Biochemistry . (In Press)

Dixit, Karuna and Pande, Ajay and Pande, Jayanti and Sarma, Siddhartha P (2016) Nuclear Magnetic Resonance Structure of a Major Lens Protein, Human gamma C-Crystallin: Role of the Dipole Moment in Protein Solubility. In: BIOCHEMISTRY, 55 (22). pp. 3136-3149.

Dolle, A and Vijayasarathy, M and Shekh, S and Hunashal, Y and Reddy, KKA and Prakash, S and Rana, A and Biswal, HS and Raghothama, S and Gowd, KH (2021) The Redox-Active Conopeptide Derived from the Venom Duct Transcriptome of Conus lividus Assists in the Oxidative Folding of Conotoxin. In: Biochemistry, 60 (16). pp. 1299-1311.

Dolle, Ashwini B and Jagadeesh, Narasimhappagari and Bhaumik, Suman and Prakash, Sunita and Biswal, Himansu S and Gowd, Konkallu Hanumae (2018) Electron transfer dissociation of synthetic and natural peptides containing lanthionine/methyllanthionine bridges. In: RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 32 (11). pp. 831-843.

Dongre, AV and Das, S and Bellur, A and Kumar, S and Chandrashekarmath, A and Karmakar, T and Balaram, P and Balasubramanian, S and Balaram, H (2021) Structural basis for the hyperthermostability of an archaeal enzyme induced by succinimide formation. In: Biophysical Journal .

Dubey, S and Majumder, P and Penmatsa, A and Sardesai, AA (2021) Topological analyses of the L-lysine exporter LysO reveal a critical role for a conserved pair of intramembrane solvent-exposed acidic residues. In: Journal of Biological Chemistry, 279 (4).

Dutta, Abhaya and Gautam, Rekha and Chatterjee, Sreejata and Ariese, Freek and Sikdar, Sujit Kumar and Umapathy, Siva (2015) Ascorbate Protects Neurons against Oxidative Stress: A Raman Microspectroscopic Study. In: ACS CHEMICAL NEUROSCIENCE, 6 (11). pp. 1794-1801.

Dutta, Santanu and Parrack, Pradip K and Sasisekharan, V (1984) Fibre diffraction of lithium DNA shows structural variability and deviation from a regular helical structure for the B-form. In: FEBS Letters, 176 (1). pp. 110-114.

Dvořák, Zdeněk and Kopp, Felix and Costello, Cait M and Kemp, Jazmin S and Li, Hao and Vrzalová, Aneta and Štěpánková, Martina and Bartoňková, Iveta and Jiskrová, Eva and Poulíková, Karolína and Vyhlídalová, Barbora and Nordstroem, Lars U and Karunaratne, Chamini V and Ranhotra, Harmit S and Mun, Kyu Shik and Naren, Anjaparavanda P and Murray, Iain A and Perdew, Gary H and Brtko, Julius and Toporova, Lucia and Schön, Arne and Wallace, Bret D and Walton, William G and Redinbo, Matthew R and Sun, Katherine and Beck, Amanda and Kortagere, Sandhya and Neary, Michelle C and Chandran, Aneesh and Vishveshwara, Saraswathi and Cavalluzzi, Maria M and Lentini, Giovanni and Cui, Julia Yue and Gu, Haiwei and March, John C and Chatterjee, Shirshendu and Matson, Adam and Wright, Dennis and Flannigan, Kyle L and Hirota, Simon A and Sartor, Ryan Balfour and Mani, Sridhar (2020) Targeting the pregnane X receptor using microbial metabolite mimicry. In: EMBO Molecular Medicine . ISSN 1757-4676

E

Eaazhisai, K and Balaram, H and Balaram, P and Murthy, MRN (2004) Structures of Unliganded and Inhibitor Complexes of W168F, a Loop6 Hinge Mutant of Plasmodium falciparum Triosephosphate Isomerase: Observation of an Intermediate Position of Loop6. In: Journal of Molecular Biology, 343 (3). pp. 671-684.

Eaazhisai, K and Jayalakshmi, R and Gayathri, P and Anand, RP and Sumathy, K and Balaram, H and Murthy, MRN (2004) Crystal Structure of Fully Ligated Adenylosuccinate Synthetase from Plasmodium falciparum. In: Journal of Molecular Biology, 335 (5). pp. 1251-1264.

Easwaran, KRK and Balasubramanian, SV (1990) Spectroscopic studies on the structure and aggregation of calcium ionophore, A23187. In: 5th Proceedings UNESCO International Conference, 1989.

Easwaran, KRK and Balasubramanian, SV and Singh, A (1994) Conformation of polymerizable diacetylenic lecithin, DC8,9PC, by 1H-NMR spectroscopy. In: Chemistry and physics of lipids, 69 (2). pp. 161-165.

Easwaran, KRK and Mahadevan, S (1972) High resolution NMR investigations on hen's egg yolk plasma. In: FEBS Letters, 25 (1). pp. 134-138.

Ekambareswara, Rao and Ramesh, N and Choudhury, D and Brahmachari, SK and Sasisekharan, V (1989) Role of the environment in the interaction of nonintercalators with Z-DNA. In: Journal of Biomolecular Structure & Dynamics, 7 (2). pp. 335-345.

Eswar, Narayanan and Nagarajaram, HA and Ramakrishnan, C and Srinivasan, N (2002) Influence of Solvent Molecules on the Stereochemical Code of Glycyl Residues in Proteins. In: Proteins: Structure, Function, and Genetics, 49 (3). pp. 326-334.

Eswar, Narayanan and Ramakrishnan, C (2000) Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures. In: Protein Engineering, 13 (4). pp. 227-238.

Eswar, Narayanan and Ramakrishnan, C and Srinivasan, N (2003) Stranded in isolation: structural role of isolated extended strands in proteins. In: Protein Engineering, 16 (5). pp. 331-339.

F

Faure, G and Joseph, AP and Craveur, P and Narwani, TJ and Srinivasan, N and Gelly, J-C and Rebehmed, J and De Brevern, AG (2019) IPBAvizu: A PyMOL plugin for an efficient 3D protein structure superimposition approach. In: Source Code for Biology and Medicine, 14 (1).

Fiore, Kristen E and Patist, Martijn J and Giannakoulias, Sam and Huang, Cheng-Hsin and Verma, Hitesh and Khatri, Bhavesh and Cheng, Richard P and Chatterjee, Jayanta and Petersson, E James (2022) Structural impact of thioamide incorporation into a β-hairpin. In: RSC Chemical Biology, 3 (5). pp. 582-591. ISSN 2633-0679

Flint, Jasper and Aghera, Nilesh K and Varadarajan, Raghavan and Jaswal, Sheila (2019) Application of Numerical Simulations to Extract Protein Folding Parameters from Hydrogen Exchange Mass Spectrometry Experiments under Native Conditions. In: BIOPHYSICAL JOURNAL, 116 (3, 1). 334A-335A.

Francis, AK and Iqbal, M and Balaram, P and Vijayan, M (1983) Crystal Structure of Boc-Ala-Aib-Ala-Aib-Aib-Methyl Ester, A Pentapeptide Fragment of the Channel-Forming Ionophore Suzukacillin. In: Biopolymers, 22 (6). pp. 1499-1505.

Francis, AK and Iqbal, M and Balaram, P and Vijayan, M (1982) Crystal Structure of Boc-Ala-Aib-Ala-Aib-Aib-Methyl ester, A Pentapeptide Fragment of the Channel-Forming Ionophore Suzukacillin. In: Biopolymers, 22 (6). pp. 1499-1505.

Francis, AK and Iqbal, M and Balaram, P and Vijayan, M (1983) The crystal structure of a $3_{10}$ helical decapeptide containing \alpha-aminoisobutyric acid. In: FEBS Letters, 155 (2). pp. 230-232.

Francis, AK and Vijayakumar, EKS and Balaram, P and Vijayan, M (1985) A Helical Peptide Containing A Majority Of Valyl Residues - Crystal-Structure Of T-Butyloxycarbonyl-(L-Valyl-Alpha-Aminoisobutyryl)3-L-Valyl Methyl-Ester Monohydrate. In: International Journal Of Peptide And Protein Research, 26 (2). pp. 214-223.

Franklin, J Benjamin and Subramanian, KA and Fernando, S Antony and Krishnan, KS (2009) Diversity and Distribution of Conidae from the TamilNadu Coast of India (Mollusca: Caenogastropoda: Conidae). In: Zootaxa (2250). pp. 3-63.

Franklin, Jayaseelan Benjamin and Rajesh, Rajaian Pushpabai (2015) A sleep-inducing peptide from the venom of the Indian cone snail Conus araneosus (vol 103, pg 39, 2015). In: TOXICON, 104 . p. 102.

Franklin, Jayaseelan Benjamin and Rajesh, Rajaian Pushpabai (2015) A sleep-inducing peptide from the venom of the Indian cone snail Conus araneosus. In: TOXICON, 103 . pp. 39-47.

Franklin, Jayaseelan Benjamin and Rajesh, Rajaian Pushpabai and Vinithkumar, Nambali Valsalan and Kirubagaran, Ramalingam (2017) Identification of short single disulfide-containing contryphans from the venom of cone snails using de novo mass spectrometry-based sequencing methods. In: Toxicon, 132 . pp. 50-54. ISSN 00410101

G

Gabriel, Nishanth and Duraiswamy, Ramya and Gadkari, Rupali A and Govindarajan, Sudha and Ramakrishna, Banumathi and Srivastava, Arun and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara Rao (2012) Targeted Mutagenesis of Ubiquitin-Binding Lysine Residues on the Adeno-Associated Virus (AAV)2 Capsid Improves Its Transduction Efficiency. In: Molecular Therapy, 20 (1). p. 146.

Gabriel, Nishanth and Hareendran, Sangeetha and Sen, Dwaipayan and Gadkari, Rupali A and Sudha, Govindarajan and Selot, Ruchita and Hussain, Mansoor and Dhaksnamoorthy, Ramya and Samuel, Rekha and Srinivasan, Narayanaswamy and Srivastava, Alok and Jayandharan, Giridhara R (2013) Bioengineering of AAV2 Capsid at Specific Serine, Threonine, or Lysine Residues Improves Its Transduction Efficiency in Vitro and in Vivo. In: HUMAN GENE THERAPY METHODS, 24 (2). 80-U117.

Gadagkar, R and Gupta, G (1979) A nick free solution to the DNA winding problem - Round-up of research. In: Science Today, 13 (15). p. 33.

Gadiyaram, V and Dighe, A and Ghosh, S and Vishveshwara, S (2021) Network Re-Wiring During Allostery and Protein-Protein Interactions: A Graph Spectral Approach. [Book Chapter]

Gadiyaram, V and Prabantu, VM and Manjaly, AA and Muthiah, A and Vishveshwara, S (2024) GraSp-PSN: A web server for graph spectra based analysis of protein structure networks. In: Current Research in Structural Biology, 7 .

Gadiyaram, Vasundhara and Ghosh, Sambit and Vishveshwara, Saraswathi (2017) A graph spectral-based scoring scheme for network comparison. In: Journal of Complex Networks, 5 (2). pp. 219-244. ISSN 2051-1310

Gadiyaram, Vasundhara and Vishveshwara, Smitha and Vishveshwara, Saraswathi (2019) From Quantum Chemistry to Networks in Biology: A Graph Spectral Approach to Protein Structure Analyses. In: JOURNAL OF CHEMICAL INFORMATION AND MODELING, 59 (5, SI). pp. 1715-1727.

Gadkari, RA and Roy, S and Rekha, N and Srinivasan, N and Dighe, RR (2005) Identification of a heterodimer-specific epitope present in human chorionic gonadotrophin (hCG) using a monoclonal antibody that can distinguish between hCG and human LH. In: Journal of Molecular Endocrinology, 34 (3). pp. 879-887.

Gadkari, Rupali A and Srinivasan, Narayanaswamy (2010) Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures. In: BMC Structural Biology, 10 .

Gadkari, Rupali A and Varughese, Deepthi and Srinivasan, N (2009) Recognition of Interaction Interface Residues in Low-Resolution Structures of Protein Assemblies Solely from the Positions of C alpha Atoms. In: PLoS ONE, 4 (2).

Gadkari, Rupali A. and Srinivasan, Narayanaswamy (2012) Protein-Protein Interactions in Clathrin Vesicular Assembly: Radial Distribution of Evolutionary Constraints in Interfaces. In: PLOS ONE, 7 (2). e31445.

Gadre, Shridhar R and Kulkarni, Sudhir A and Suresh, CH and Shrivastava, Indira H (1995) Basis set dependence of the molecular electrostatic potential topography. A case study of substituted benzenes. In: Chemical Physics Letters, 239 (4-6). pp. 273-281.

Ganapathy, Aparna and Pandey, Nishtha and Srisailapathy, Srikumari CR and Jalvi, Rajeev and Malhotra, Vikas and Venkatappa, Mohan and Chatterjee, Arunima and Sharma, Meenakshi and Santhanam, Rekha and Chadha, Shelly and Ramesh, Arabandi and Agarwal, Arun K. and Rangasayee, Raghunath R. and Anand, Anuranjan (2014) Non-Syndromic Hearing Impairment in India: High Allelic Heterogeneity among Mutations in TMPRSS3, TMC1, USHIC, CDH23 and TMIE. In: PLOS ONE, 9 (1).

Ganesan, S and Mittal, N and Bhat, A and Adiga, R and Ganesan, A and Nagarajan, D and Varadarajan, R (2024) Improved Prediction of Stabilizing Mutations in Proteins by Incorporation of Mutational Effects on Ligand Binding. In: Proteins: Structure, Function and Bioinformatics .

Ganesh, C and Banerjee, Antara and Shah, Aseema and Varadarajan, Raghavan (1999) Disordered N-terminal residues affect the folding thermodynamics and kinetics of maltose binding protein. In: FEBS Letters, 454 (3). pp. 307-311.

Ganesh, C and Eswar, Narayanan and Srivastava, Sarika and Ramakrishnan, Chandrasekharan and Varadarajan, Raghavan (1999) Prediction of the maximal stability temperature of monomeric globular proteins solely from amino acid sequence. In: FEBS Letters, 454 (1-2). pp. 31-36.

Ganesh, C and Shah, Aseema N and Swaminathan, CP and Surolia, Avadhesha and Varadarajan, Raghavan (1997) Thermodynamic characterization of the reversible, two-state unfolding of maltose binding protein, a large two-domain protein. In: Biochemistry, 36 (16). pp. 5020-5028.

Ganesh, C and Zaidi, Faisal N and Udgaonkar, Jayant B and Varadarajan, Raghavan (2001) Reversible formation of on-pathway macroscopic aggregates during the folding of maltose binding protein. In: Protein Science, 10 (8). 1635 -1644.

Ganguly, Abantika and Chatterji, Dipankar (2012) A Comparative Kinetic and Thermodynamic Perspective of the sigma-Competition Model in Escherichia coli. In: BIOPHYSICAL JOURNAL, 103 (6). pp. 1325-1333. (In Press)

Ganguly, Abantika and Chatterji, Dipankar (2011) Sequential Assembly of an Active RNA Polymerase Molecule at the Air-Water Interface. In: Langmuir, 27 (7). pp. 3808-3814.

Ganguly, Abantika and Rajdev, Priya and Chatterji, Dipankar (2009) Sequence Specific Interaction between Promoter DNA and Escherichia coli RNA Polymerase: Comparative Thermodynamic Analysis with One Immobilized Partner. In: Journal Of Physical Chemistry B, 113 (46). pp. 15399-15408.

Ganguly, Abantika and Rajdev, Priya and Williams, Sunanda Margrett and Chatterji, Dipankar (2012) Nonspecific Interaction between DNA and Protein allows for Cooperativity: A Case Study with Mycobacterium DNA Binding Protein. In: Journal of Physical Chemistry B, 116 (1). pp. 621-632.

Ganguly, J and Paul, Ranjit and Ramesha, CS and Balaram, P (1977) Mechanism of cholesterol lowering effects of polyunsaturated fats. In: Proceedings of the 1st FAOB Congress . pp. 105-113.

Garai, Preeti and Lahiri, Amit and Ghosh, Dipan and Chatterjee, Jayanta and Chakravortty, Dipshikha (2016) Peptide-utilizing carbon starvation gene yjiY is required for flagella-mediated infection caused by Salmonella. In: MICROBIOLOGY-SGM, 162 (1). pp. 100-116.

Garg, Manoj and Kanojia, Deepika and Seth, Amlesh and Kumar, Rajive and Gupta, Anju and Surolia, Avadhesha and Suri, Anil (2010) Heat-shock protein 70-2 (HSP70-2) expression in bladder urothelial carcinoma is associated with tumour progression and promotes migration and invasion. In: European Journal of Cancer, 46 (1). pp. 207-215.

Garg, P and Satheesh, T and Ganji, M and Dutta, S (2024) Cryo-EM Reveals the Mechanism of DNA Compaction by Mycobacterium smegmatis Dps2. In: Journal of Molecular Biology .

Gautam, S and Mahapa, A and Yeramala, L and Gandhi, A and Krishnan, S and Kutti R, V and Chatterji, D (2023) Regulatory mechanisms of c-di-AMP synthase from Mycobacterium smegmatis revealed by a structure: Function analysis. In: Protein Science, 32 (3).

Gautam, Saurabh and Dubey, Priyanka and Singh, Pranveer and Kesavardhana, S and Varadarajan, Raghavan and Gupta, Munishwar N (2012) Smart polymer mediated purification and recovery of active proteins from inclusion bodies. In: Journal of Chromatography A, 1235 . pp. 10-25.

Gautam, Saurabh and Dubey, Priyanka and Singh, Pranveer and Varadarajan, Raghavan and Gupta, Munishwar N (2012) Simultaneous refolding and purification of recombinant proteins by macro-(affinity ligand) facilitated three-phase partitioning. In: Analytical Biochemistry, 430 (1). pp. 56-64.

Gayathri, P and Balaram, Hemalatha and Murthy, MRN (2007) Structural biology of plasmodial proteins. In: Current Opinion in Structural Biology, 17 (6). pp. 744-754.

Gayathri, P and Banerjee, Mousumi and Vijayalakshmi, A and Azeez, Shamina and Balaram, Hemalatha and Balaram, P and Murthy, MRN (2007) Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii. In: Acta Crystallographica Section D-Biological Crystallography, 63 (2). pp. 206-220.

Gayathri, P and Banerjee, Mousumi and Vijayalakshmi, A and Balaram, Hemalatha and Balaram, P and Murthy, MRN (2009) Biochemical and structural characterization of residue 96 mutants of Plasmodium falciparum triosephosphate isomerase: active-site loop conformation, hydration and identification of a dimer-interface ligand-binding site. In: Acta Crystallographica Section D-Biological Crystallography, 65 (8). pp. 847-857.

Gayathri, P and Satheshkumar, PS and Prasad, K and Nair, Smita and Savithri, HS and Murthy, MRN (2006) Crystal structure of the serine protease domain of Sesbania mosaic virus polyprotein and mutational analysis of residues forming the S1-binding pocket. In: Virology, 346 (2). pp. 440-451.

Gayathri, P and Subbayya, IN Sujay and Ashok, Chethan S and Selvi, T Senthamizh and Balaram, Hemalatha and Murthy, MRN (2008) Crystal structure of a chimera of human and plasmodium falciparum hypoxanthine guanine phosphoribosyltransferases provides insights into oligomerization. In: Proteins-Structure Function and Bioinformatics, 73 (4). pp. 1010-1020.

Geereddy, BR and Narayaman, S and Reddy, PY and Surolia, A (2002) Abrin, a new model substrate for alpha-crystallin in vitro chaperone activity. In: Investigative Ophthalmology & Visual Science, 43 (Suppl2). U997-U997.

Geethanandan, K and Abhilash, Joseph and Bharath, SR and Sadasivan, C and Haridas, M (2011) Crystallization and preliminary X-ray studies of a galactose-specific lectin from the seeds of Spatholobus parviflorus. In: Acta Crystallographica Section F, 67 (Part 6). pp. 700-702.

Geethanandan, K and Abhilash, Joseph and Bharath, SR and Sadasivan, C and Haridas, M (2011) X-ray structure of a galactose-specific lectin from Spatholobous parviflorous. In: International Journal of Biological Macromolecules, 49 (5). pp. 992-998.

Gehi, BR and Gadhave, K and Uversky, VN and Giri, R (2022) Intrinsic disorder in proteins associated with oxidative stress-induced JNK signaling. In: Cellular and Molecular Life Sciences, 79 (4).

Gelly, Jean-Christophe and Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and de Brevern, Alexandre G (2011) iPBA: a tool for protein structure comparison using sequence alignment strategies. In: Nucleic Acids Research, 39 (2). W18-W23.

George, Jude Baby and Abraham, Grace Mathew and Amrutur, Bharadwaj and Sikdar, Sujit Kumar (2015) Robot navigation using neuro-electronic hybrid systems. In: 28th International Conference on VLSI Design (VLSID) / 14th International Conference on Embedded Systems, JAN 03-07, 2015, Bangalore, INDIA, pp. 93-98.

George, Jude Baby and Abraham, Grace Mathew and Singh, Katyayani and Ankolekar, Shreya M and Amrutur, Bharadwaj and Sikdar, Sujit Kumar (2014) Input coding for neuro-electronic hybrid systems. In: BIOSYSTEMS, 126 . pp. 1-11.

Ghatak, Payel and Karmakar, Kajari and Kasetty, Sanjay and Chatterji, Dipankar (2011) Unveiling the Role of Dps in the Organization of Mycobacterial Nucleoid. In: PLos One, 6 (1).

Ghatak, Swagata and Banerjee, Aditi and Sikdar, Sujit Kumar (2016) Ischaemic concentrations of lactate increase TREK1 channel activity by interacting with a single histidine residue in the carboxy terminal domain. In: JOURNAL OF PHYSIOLOGY-LONDON, 594 (1). pp. 59-81.

Ghatak, Swagata and Sikdar, Sujit Kumar (2016) Lactate modulates the intracellular pH sensitivity of human TREK1 channels. In: PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY, 468 (5). pp. 825-836.

Ghatpande, AS and Rao, S and Sikdar, SK (2001) Tetrapentylammonium block of chloramine-T and veratridine modified rat brain type iia sodium channels. In: British Journal of Pharmacology, 132 (8). pp. 1755-1760.

Ghatpande, AS and Sikdar, SK (1997) Competition for binding between veratridine and KIFMK: An open channel blocking peptide of the RIIA sodium channel. In: Journal of Membrane Biology, 160 (3). pp. 177-182.

Ghatpande, AS and Sikdar, SK (1999) Voltage-dependent gating of veratridine-modified RIIA Na+ channel \alpha subunit expressed heterologously in CHO cells. In: Pflugers Archiv European Journal of Physiology, 438 (3). pp. 378-383.

Ghosh, Amit and Hansia, Priti and Vishveshwara, Saraswathi (2009) Allostery in tRNA Synthetases Elucidated from MD Simulations and Protein Structure Networks. In: Journal of biomolecular structure dynamics, 26 (6). p. 100.

Ghosh, I and Rao, VS (1984) Effect of configuration of the inhibitors on the mode of binding to the enzyme, thermolysin. In: Journal of Biomolecular Structure and Dynamics, 22 (1). pp. 29-40.

Ghosh, Mridul and Surolia, A and Bachhawat, BK (1983) A simple and rapid method for quantification of hapten specific antibodies. In: Journal of Immunological Methods, 57 (1-3). pp. 295-300.

Ghosh, A and Jayaraman, N and Chatterji, D (2020) Small-Molecule Inhibition of Bacterial Biofilm. In: ACS Omega, 5 (7). pp. 3108-3115.

Ghosh, Amit and Brinda, KV and Vishveshwara, Saraswathi (2007) Dynamics of Lysozyme Structure Network: Probing the Process of Unfolding. In: Biophysical Journal, 92 . pp. 2523-2535.

Ghosh, Amit and Sakaguchi, Reiko and Liu, Cuiping and Vishveshwara, Saraswathi and Hou, Ya-Ming (2011) Allosteric Communication in Cysteinyl tRNA Synthetase A NETWORK OF DIRECT AND INDIRECT READOUT. In: Journal of Biological Chemistry, 286 (43). pp. 37721-37731.

Ghosh, Amit and Vishveshwara, Saraswathi (2006) Modelling and molecular dynamics simulationof tRNA bound methionine tRNA synthetase. In: InCoB 2006 International Conference on Bioinformatics-2006, Dec 2006, New Delhi.

Ghosh, Amit and Vishveshwara, Saraswathi (2008) Variations in Clique and Community Patterns in Protein Structures during Allosteric Communication: Investigation of Dynamically Equilibrated Structures of Methionyl tRNA Synthetase Complexes. In: BIOCHEMISTRY, 47 (44). pp. 11398-11407.

Ghosh, Amit and Vishveshwara, Saraswathi (2007) A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis. In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), 104 (40). pp. 15711-15716.

Ghosh, Anirban and Bansal, Manju (1999) C-H..O Hydrogen Bonds in Minor Groove of A-tracts in DNA Double Helices. In: Journal of Molecular Biology, 294 (5). pp. 1149-1158.

Ghosh, Anirban and Bansal, Manju (1999) Three-centre C-H...O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures. In: Acta Crystallographica Section D-Biological Crystallography, 55 (12). pp. 2005-2012.

Ghosh, Aparajita and Banerjee, Tanushree and Bhandary, Suman and Surolia, Avadhesha (2014) Formulation of nanotized curcumin and demonstration of its antimalarial efficacy. In: INTERNATIONAL JOURNAL OF NANOMEDICINE, 9 . pp. 5373-5387.

Ghosh, Arindam and Bansal, M (2003) A glossary of DNA structures from A to Z. In: Acta Crystallographica Section D Biological Crystallography, 59 (4). pp. 620-626.

Ghosh, Arindam and Bansal, Manju (2001) Structural features of B-DNA dodecamer crystal structures: Influence of crystal packing versus base sequence. In: Satellite Symposium on Structural Biology and Molecular Recognition, SEP 27-29, 1999, Calcutta, India.

Ghosh, Debalina and Faure, Nicolas and Kundu, Sharmistha and Rondelez, Francis (2003) Hybridization and immobilization of long ds-DNAs on polystyrene microspheres. In: Langmuir, 19 (14). pp. 5830-5837.

Ghosh, Debalina and Ramakanth, Madhugiri and Bhaumik, Anusarka and Faure, Nicolas and Rondelez, Francis and Chatterji, Dipankar (2005) Transcription of T7 DNA immobilised on latex beads and Langmuir-Blodgett film. In: Journal of Biochemical and Biophysical Methods, 62 (1). pp. 51-62.

Ghosh, Dipan and Lahiri, Priyanka and Verma, Hitesh and Mukherjee, Somnath and Chatterjee, Jayanta (2016) Engineering beta-sheets employing N-methylated heterochiral amino acids. In: CHEMICAL SCIENCE, 7 (8). pp. 5212-5218.

Ghosh, Eshan and Dwivedi, Hemlata and Baidya, Mithu and Srivastava, Ashish and Kumari, Punita and Stepniewski, Tomek and Kim, Hee Ryung and Lee, Mi-Hye and van Gastel, Jaana and Chaturvedi, Madhu and Roy, Debarati and Pandey, Shubhi and Maharana, Jagannath and Guixa-Gonzalez, Ramon and Luttrell, Louis M and Chung, Ka Young and Dutta, Somnath and Selent, Jana and Shukla, Arun K (2019) Conformational Sensors and Domain Swapping Reveal Structural and Functional Differences between beta-Arrestin Isoforms. In: CELL REPORTS, 28 (13). 3287+.

Ghosh, Indira and Rao, VSR (1982) A conformational approach to the study of the dynamics of enzyme inhibition: studies on thermolysin. In: International Journal of Biological Macromolecules, 4 (3). pp. 130-136.

Ghosh, JK and Sarkar, SN and Sikdar, SK (1998) Spectroscopic studies of the interactions of the pyrethroid insecticide fenvalerate with gramicidin. In: Biochemistry and Molecular Biology International, 44 (06). pp. 1083-1092.

Ghosh, M and Singh, M (2020) Structure specific recognition of telomeric repeats containing RNA by the RGG-box of hnRNPA1. In: Nucleic acids research, 48 (8). pp. 4492-4506.

Ghosh, Meenakshi and Singh, Mahavir (2018) RGG-box in hnRNPA1 specifically recognizes the telomere G-quadruplex DNA and enhances the G-quadruplex unfolding ability of UP1 domain. In: NUCLEIC ACIDS RESEARCH, 46 (19). pp. 10246-10261.

Ghosh, P and Chatterjee, J (2020) CH-Ï� interaction between cross-strand amino acid pairs stabilizes Î²-hairpins. In: Chemical Communications, 56 (92). pp. 14447-14450.

Ghosh, P and Raj, N and Verma, H and Patel, M and Chakraborti, S and Khatri, B and Doreswamy, CM and Anandakumar, SR and Seekallu, S and Dinesh, MB and Jadhav, G and Yadav, PN and Chatterjee, J (2023) An amide to thioamide substitution improves the permeability and bioavailability of macrocyclic peptides. In: Nature Communications, 14 (1).

Ghosh, Pallavi and Ishihama, Akira and Chatterji, Dipankar (2001) Escherichia coli RNA polymerase subunit \omega and its n- terminal domain bind full-length \beta to facilitate incorporation into the ${\alpha}_{\mathrm{2}}$\beta subassembly. In: European Journal of Biochemistry, 268 (17). pp. 4621-4627.

Ghosh, Pallavi and Ramakrishnan, Chandrashekharan and Chatterji, Dipankar (2003) Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with $\omega-\beta′$ interaction. In: Biophysical Chemistry, 103 (3). pp. 223-237.

Ghosh, SK and Nelles, M and Chanakya, HN and Baruah, DC Chanakya, HN, ed (2021) Biomethane through resource circularity: Research, technology and practices. CRC Press, Boca Raton, pp. 1-215. ISBN 9781003204435

Ghosh, Sambit and Gadiyaram, Vasundhara and Vishveshwara, Saraswathi (2017) Validation of protein structure models using network similarity score. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 85 (9). pp. 1759-1776.

Ghosh, Sangita and Easwaran, Kalpathy RK and Bhattacharya, Santanu (1996) Synthesis of novel disulfide containing macrocyclic diacylglycerols. In: Tetrahedron Letters, 37 (32). pp. 5769-5777.

Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Influence of iron on iron dependent repressor (IdeR) activation and DNA binding. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). p. 8.

Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Investigating the Mechanism of Iron Dependent Repressor (IDER) Activation and DNA Binding. In: BIOPHYSICAL JOURNAL, 108 (2, 1). 377A.

Ghosh, Soma and Prasad, KVS and Vishveshwara, Saraswathi and Chandra, Nagasuma (2011) Rule-based modelling of iron homeostasis in tuberculosis. In: Molecular BioSystems, 7 (10). pp. 2750-2768.

Ghosh, Soma and Vishveshwara, Saraswathi and Chandra, Nagasuma (2013) Inferring biochemical routes from biochemical networks. In: 4th Annual ORNL Biomedical Sciences and Engineering Conference on Collaborative Biomedical Innovations, MAY 21-23, 2013, Biomed Sci & Engn Ctr, Oak Ridge Natl Lab, Oak Ridge, TN.

Ghosh, Subho and Chatterji, Dipankar (2017) Two zinc finger proteins from Mycobacterium smegmatis: DNA binding and activation of transcription. In: GENES TO CELLS, 22 (8). pp. 699-714.

Ghosh , Amit and Vishveshwara , Saraswathi (2007) Communication pathways from the anti-codon region to the aminoacylation site in Methionyl tRNA Synthetase: Molecular dynamics simulations and the structure network analysis. In: Proceedings of the National Academy of Sciences, 104 (40). pp. 15711-15716.

Ghoshal, Alokesh K (1999) Minithioredoxin: A Folded and Functional Peptide Fragment of Thioredoxin. In: Biochemical and Biophysical Research Communications, 261 (3). pp. 676-681.

Ghoshal, Alokesh K and Swaminathan, Chittoor P and Thomas, Celestine J and Surolia, Avadhesha and Varadarajan, Raghavan (1999) Thermodynamic and kinetic analysis of the Escherichia coli thioredoxin-C fragment complementation system. In: Biochemical Journal, 339 . pp. 721-727.

Ghoshal, B and Chakraborty, D and Nag, M and Varadarajan, R and Jhunjhunwala, S (2024) Ex Vivo Delivery of mRNA to Immune Cells via a Nonendosomal Route Obviates the Need for Nucleoside Modification. In: ACS Bio and Med Chem Au .

Ghoshdastidar, D and Bansal, M (2022) Flexibility of flanking DNA is a key determinant of transcription factor affinity for the core motif. In: Biophysical Journal .

Ghoshdastidar, Debostuti and Bansal, Manju (2019) Dynamics of physiologically relevant noncanonical DNA structures: an overview from experimental and theoretical studies. In: BRIEFINGS IN FUNCTIONAL GENOMICS, 18 (3). pp. 192-204.

Gimeno, Ana and Delgado, Sandra and Valverde, Pablo and Bertuzzi, Sara and Alvaro Berbis, Manuel and Echavarren, Javier and Lacetera, Alessandra and Martin-Santamaria, Sonsoles and Surolia, Avadhesha and Canada, Francisco Javier and Jimenez-Barbero, Jesus and Arda, Ana (2019) Minimizing the Entropy Penalty for Ligand Binding: Lessons from the Molecular Recognition of the Histo Blood-Group Antigens by Human Galectin-3. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 58 (22). pp. 7268-7272.

Giri, M and Maulik, A and Singh, M (2019) Signatures of Specific DNA Binding by the AT-Rich Interaction Domain of BAF250a. In: Biochemistry, 59 (1). pp. 100-113.

Giri, Malyasree and Gupta, Parul and Maulik, Aditi and Gracias, Magaly and Singh, Mahavir (2022) Structure and DNA binding analysis of AT ‐rich interaction domain present in human BAF‐B specific subunit BAF250b. In: Protein Science, 31 (5). ISSN 0961-8368

Girish, TS and Gopal, B (2005) Crystallization and preliminary X-ray diffraction studies on the catalytic domain of the chick retinal neurite-inhibitory factor CRYP-2. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (4). pp. 381-383.

Girish, Tavarekere S and Gopal, Balasubramanian (2010) Crystal Structure of Staphylococcus aureus Metallopeptidase (Sapep) Reveals Large Domain Motions between the Manganese-bound and Apo-states. In: Journal of Biological Chemistry, 285 (38). pp. 29406-29415.

Girish, Tavarekere S and Navratna, Vikas and Gopal, B (2011) Structure and nucleotide specificity of Staphylococcus aureus dihydrodipicolinate reductase (DapB). In: FEBS Letters, 585 (16). pp. 2561-2567.

Girish, Tavarekere S and Sharma, Eshita and Gopal, B (2008) Structural and functional characterization of Staphylococcus aureus dihydrodipicolinate synthase. In: FEBS Letters, 582 (19). pp. 2923-2930.

Girish, Tavarekere S and Vivek, B and Colaco, Melwin and Misquith, Sandra and Gopal, B (2013) Structure of an amidohydrolase, SACOL0085, from methicillin-resistant Staphylococcus aureus COL. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (Part 2). pp. 103-108.

Gnanadhas, Divya Prakash and Ben Thomas, Midhun and Elango, Monalisha and Raichur, Ashok M and Chakravortty, Dipshikha (2013) Chitosan-dextran sulphate nanocapsule drug delivery system as an effective therapeutic against intraphagosomal pathogen Salmonella. In: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 68 (11). pp. 2576-2586.

Gnanavel, Mutharasu and Mehrotra, Prachi and Rakshambikai, Ramaswamy and Martin, Juliette and Srinivasan, Narayanaswamy and Bhaskara, Ramachandra M (2014) CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins. In: BMC BIOINFORMATICS, 15 .

Gokhale, RS and Ray, Soumya S and Balaram, Hemalatha and Balaram, Padmanabhan (1998) Unfolding of Plasmodium falciparum triosephosphate isomerase in urea and guanidinium chloride solutions. Evidence for a novel disulfide exchange reaction in a covalently crosslinked mutant. In: Biochemistry, 38 (1). pp. 423-431.

Gokhale, Rajesh S and Agarwalla, Sanjay and Santi, Daniel V and Balaram, Padmanabhan (1996) Covalent Reinforcement of a Fragile Region in the Dimeric Enzyme Thymidylate Synthase Stabilizes the Protein against Chaotrope-Induced Unfolding. In: Biochemistry, 35 (2). pp. 7150-7158.

Gopal, B and Rajavel, M and Kulkarni, Neema N (2008) Conformational Studies Suggest That the Double Stranded \beta Helix Scaffold Provides an Optimal Balance Between Protein Stability and Function. In: Protein and Peptide Letters, 15 (3). pp. 244-249.

Gopal, B (2024) Self-driving autonomous machines to engineer novel enzymes. In: Journal of Biosciences, 49 (2).

Gopal, B and Krishna Rao, JV and Thomas, CJ and Bhattacharya, A and Bhattacharya, S and Murthy, MRN and Surolia, A (1998) Induction of a spectroscopically defined transition by guanidinium hydrochloride on a recombinant calcium binding protein from Entamoeba histolytica. In: FEBS Letters, 441 (01). pp. 71-76.

Gopal, B and Madan, Lalima L and Betz, Stephen F and Kossiakoff, Anthony A (2005) The Crystal Structure of a Quercetin 2,3-Dioxygenase from Bacillus subtilis Suggests Modulation of Enzyme Activity by a Change in the Metal Ion at the Active Site(s). In: Biochemistry, 44 (1). pp. 193-201.

Gopal, B and Prasanna, V and Parthasarathy, S and Santi, DV and Balaram, P and Murthy, MRN (1998) Crystals of a thymidylate synthase mutant offer insights into crystal packing and plasticity of protein-protein contacts. In: Current Science, 75 (3). pp. 299-304.

Gopal, B and Ray, Soumya S and Gokhale, RS and Balaram, H and Murthy, MRN and Balaram, P (1999) Cavity-Creating Mutation at the Dimer Interface of Plasmodium falciparum Triosephosphate Isomerase: Restoration of Stability by Disulfide Cross-Linking of Subunits. In: Biochemistry, 38 (1). pp. 478-486.

Gopal, B and Suma, R and Murthy, MRN and Bhattacharya, A and Bhattacharya, S (1998) Crystallization and preliminary X-ray studies of a recombinant calcium-binding protein from Entamoeba histolytica. In: Acta Crystallographic Section D, 54 (Part 6). pp. 1442-1445.

Gopal, B and Swaminathan, CP and Bhattacharya, Sudha and Bhattacharya, Alok and Murthy, MRN and Surolia, A (1997) Thermodynamics of metal ion binding and denaturation of a calcium binding protein from Entamoeba histolytica. In: Biochemistry, 36 (36). pp. 10910-10916.

Gopalakrishnan, B and Bansal, M (1985) Comparison of Interproton Distances in DNA Models with Nuclear Overhauser Enhancement Data. In: Journal of Bioscience, 8 (3-4). pp. 603-614.

Gopalakrishnan, B and Bansal, M (1988) Modeling Dna Recognition By Proteins - Interaction Of An Asn Dipeptide With Dna. In: Indian Journal of Biochemistry & Biophysics, 25 (6). pp. 495-503.

Gopalakrishnan, B and Bansal, M (1988) Theoretical studies on alpha-helix--DNA interactions. In: Journal of Biomolecular Structure & Dynamics, 5 (4). 859 -871.

Gopalakrishnapai, Jayashree and Gupta, Garima and Karthikeyan, T and Sinha, Sharmistha and Kandiah, Eaazhisai and Gemma, Emiliano and Oscarson, Stefan and Surolia, Avadhesha (2006) Isothermal titration calorimetric study defines the substrate binding residues of calreticulin. In: Biochemical and Biophysical Research Communications, 351 (1). pp. 14-20.

Gopalan, A and Deka, G and Prabhavathi, M and Savithri, H S and Murthy, M R N and Raja, A (2018) Structural and biophysical characterization of Rv3716c, a hypothetical protein from Mycobacterium tuberculosis. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 495 (1). pp. 982-987.

Gopi, Hosahudya N and Ravindra, Gudihal and Pal, Prajna P and Pattanaik, Priyaranjan and Balaram, Hemalatha and Balaram, Padmanabhan (2003) Proteolytic stability of beta-peptide bonds probed using quenched fluorescent substrates incorporating a hemoglobin cleavage site. In: FEBS Letters, 535 (1-3). pp. 175-178.

Gopinath, K and Sundareshan, S and Bhuvaneswari, M and Karande, A and Murthy, MRN and Nayudu, MV and Savithri, HS (1994) Primary structure of sesbania mosaic virus coat protein: its implications to the assembly and architecture of the virus. In: Indian Journal of Biochemistry & Biophysics, 31 (4). 322-328 .

Gorai, B and Sahoo, AK and Srivastava, A and Dixit, NM and Maiti, PK (2021) Concerted interactions between multiple gp41 trimers and the target cell lipidome may be required for HIV-1 entry. In: Journal of Chemical Information and Modeling . (In Press)

Goudru, Hanumanth G and Kumar, Sathish and Jayalakshmi, Senigala K and Ballal, Chandish R and Sharma, Hari C and Sreeramulu, Kuruba (2013) Purification and characterization of prophenoloxidase from cotton bollworm, Helicoverpa armigera. In: ENTOMOLOGICAL RESEARCH, 43 (1). pp. 55-62.

GourieDevi, M and Chaudhuri, JR and Vasanth, A and Saleem, Q and Mutsuddi, M and Gopinath, M and Sarkar, PS and Brahmachari, SK (1998) Correlation of clinical profile of myotonic dystrophy with CTG repeats in the myotonin protein kinase gene. In: Indian Journal of Medical Research, 107 . pp. 187-196.

Goutam, Kapil and Gupta, Arvind K and Gopal, Balasubramanian (2017) The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor sigma(J) modulates promoter recognition. In: NUCLEIC ACIDS RESEARCH, 45 (16). pp. 9760-9772.

Goutam, Kapil and Gupta, Arvind Kumar and Gopal, Balasubramanian (2015) Crystallographic studies of the extracytoplasmic function sigma factor sigma(J) from Mycobacterium tuberculosis. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 71 (8). pp. 946-950.

Govindaraja, M and Jagadeesh Kumar, D and Narayan, P and Nagendra, HG and Rao, KS (2023) Interactions of dopamine and copper with supercoiled DNA: Spectroscopic and molecular docking study. In: Current Topics in Pharmacology, 27 . pp. 17-30.

Govindu, Panchada Ch V and Sudarshan, Chidanad and Gowd, Konkallu Hanumae (2017) Synthesis of two closely spaced cysteine barbiturates containing peptides by copper-catalyzed oxidation of contryphan disulfide. In: SYNTHETIC COMMUNICATIONS, 47 (17). pp. 1559-1569.

Gowd, KH and Sabareesh, V and Sudarslal, S and Iengar, P and Franklin, B and Fernando, A and Dewand, K and Ramaswami, M and Sarma, SP and Sikdar, S and Balaram, P and Krishnan, KS (2005) Novel peptides of therapeutic promise from Indian Conidae. In: 1st International Conference on Natural Products and Molecular Medicine, JAN 13-15, 2005, Univ Cape Town.

Gowd, Konkallu Hanumae and Dewan, Kalyan Kumar and Lengar, Prathima and Krishnan, Kozhalmannom S and Balaram, Padmanabhan (2008) Probing peptide libraries from Conus achatinus using mass spectrometry and cDNA sequencing: identification of \delta and \omega-conotoxins. In: Journal of Mass Spectrometry, 43 (6). pp. 791-805.

Gowd, Konkallu Hanumae and Krishnan, KS and Balaram, Padmanabhan (2007) Identification of Conus amadis disulfide isomerase: minimum sequence length of peptide fragments necessary for protein annotation. In: Molecular BioSystems, 3 (8). pp. 554-566.

Gowda, L Siddarame and Balaji, VN (1977) A Simple Method of Obtaining the Band Strengths in the Electronic Spectra of Diatomic Molecules. In: Spectroscopy Letters, 10 (1). pp. 1-6.

Gowda, Giri and Sagurthi, Someswar Rao and Savithri, HS and Murthy, MRN (2008) Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analysis of the mannose 6-phosphate isomerase from Salmonella typhimurium. In: Acta Crystallographica Section F Structural Biology and Crystallization Communications, 64 . pp. 81-84.

Gowda, Raghavendra CD and Shivaprasad, HV and Kumar, Venkatesh R and Rajesh, R and Saikumari, YK and Frey, BM and Frey, FJ and Sharath, BK and Vishwanath, BS (2011) Characterization of Major Zinc Containing Myonecrotic and Procoagulant Metalloprotease `Malabarin' from Non Lethal Trimeresurus malabaricus Snake Venom with Thrombin Like Activity: Its Neutralization by Chelating Agents. In: Current Topics in Medicinal Chemistry, 11 (20). pp. 2578-2588.

Gowri, V S and Pandit, Shashi B and Karthik, P S and Srinivasan, N and Balaji, S (2003) Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. In: Nucleic Acids Research, 31 (1). pp. 486-488.

Gowri, VS and Anamika, K and Gore, S and Srinivasan, N (2007) Analysis on sliding helices and strands in protein structural comparisons: A case study with protein kinases. In: Journal of Biosciences, 32 (5). pp. 921-928.

Gowri, VS and Tina, KG and Krishnadev, O and Srinivasan, N (2007) Strategies for the Effective Identification of Remotely Related Sequences in Multiple PSSM Search Approach. In: Proteins: Structure, Function, and Bioinformatics, 67 (4). 789 -794.

Grandhi, Nisha Jayaprakash and Mamidi, Ashalatha Sreshty and Surolia, Avadhesha (2015) Pattern Recognition in Legume Lectins to Extrapolate Amino Acid Variability to Sugar Specificity. In: BIOCHEMICAL ROLES OF EUKARYOTIC CELL SURFACE MACROMOLECULES , 842 . pp. 199-215.

Grandhi, Nisha Jayaprakash and Mamidi, Ashalatha Sreshty and Surolia, Avadhesha (2015) Pattern Recognition in Legume Lectins to Extrapolate Amino Acid Variability to Sugar Specificity. In: International Symposium on the Biochemical Role of Eukaryotic Cell surface Macromolecules, JAN, 2014, Kolkata, INDIA, pp. 199-215.

Gratraud, Paul and Surolia, Namita and Besra, Gurdyal S and Surolia, Avadhesha and Kremer, Laurent (2008) Antimycobacterial Activity and Mechanism of Action of $NAS-91^\nabla$. In: Antimicrobial Agents and Chemotherapy, 52 (3). pp. 1162-1166.

Gromiha, M Michael and Orengo, Christine A and Sowdhamini, Ramanathan and Thornton, and Janet M and Valencia, Alfonso (2022) Srinivasan (1962–2021) in Bioinformatics and beyond. In: Bioinformatics, 38 (8). pp. 2377-2379. ISSN 1367-4803

Grossniklaus, Ueli and Madhusudhan, MS and Nanjundiah, Vidyanand (1996) Nonlinear Enzyme Kinetics Can Lead to High Metabolic Flux Control Coefficients: Implications for the Evolution of Dominance. In: Journal of Theoretical Biology, 182 (03). pp. 299-302.

Gu, Jiande and Leszczynski, Jerzy and Bansal, Manju (1999) A new insight into the structure and stability of Hoogsteen hydrogen-bonded G-tetrad: an ab initio SCF study. In: Chemical Physics Letters, 311 (3-4). pp. 209-214.

Gudihal, Ravindra and Rappal, Ranganayaki S and Raghothama, Srinivasa and Mandayam, Srinivasan C and Gilardi, Richard D and Karle, Isabella L and Balaram, Padmanabhan (2004) Two Novel Hexadepsipeptides with Several Modified Amino Acid Residues Isolated from the Fungus Isaria. In: Chemistry & Biodiversity, 1 (3). pp. 489-504.

Gulati, Ashutosh and Alapati, Kavitha and Murthy, Abhinandan and Savithri, HS and Murthy, MRN (2016) Structural studies on tobacco streak virus coat protein: Insights into the pleomorphic nature of ilarviruses. In: JOURNAL OF STRUCTURAL BIOLOGY, 193 (2). pp. 95-105.

Gulati, Ashutosh and Murthy, Abhinandan and Abraham, Ambily and Mohan, Kalyani and Natraj, Usha and Savithri, HS and Murthy, MRN (2016) Structural studies on chimeric Sesbania mosaic virus coat protein: Revisiting SeMV assembly. In: VIROLOGY, 489 . pp. 34-43.

Gunasekaran, K and Gomathi, L and Ramakrishnan, C and Chandrasekhar, J and Balaram, P (1998) Conformational interconversions in peptide beta-turns: analysis of turns in proteins and computational estimates of barriers. In: Journal of Molecular Biology, 284 (5). pp. 1505-15016.

Gunasekaran, K and Nagarajaram, HA and Ramakrishnan, C and Balaram, P (1998) Stereochemical Punctuation Marks in Protein Structures: Glycine and Proline Containing Helix Stop Signals. In: Journal of Molecular Biology, 275 (5). pp. 917-932.

Gunasekaran, K and Ramakrishnan, C and Balaram, P (1997) Beta-Hairpins in proteins revisited: lessons for de novo design. In: Protein Engineering, 10 (10). pp. 1131-1141.

Gunasekaran, K. and Ramakrishnan, C and Balaram, P (1996) Disallowed Ramachandran Conformations of Amino Acid Residues in Protein Structures. In: Journal of Molecular Biology, 264 (1). pp. 191-198.

Gunasekaran, K. and Ramakrishnan, C and Balaram, P (1995) Stereochemical analysis of the antigenic tip of the V3 loop peptide of HIV-1 gp120. In: International Journal of Peptide & Protein Research, 46 (5). pp. 359-365.

Gupta, Dipti and Surolia, Avadhesha (1992) Synthesis of Specifically Deuteriated Derivatives of D-Galactose and D-Galactosamine. In: Journal of Carbohydrate Chemistry, 11 (2). pp. 171-182.

Gupta, Garima and Surolia, Avadhesha (2007) Collectins: sentinels of innate immunity. In: Bioessays, 29 (5). pp. 452-464.

Gupta, Goutam and Sasisekharan, V (1978) Theoretical calculations of base-base interactions in nucleic acids: II Stacking interactions in polynucleotides. In: Nucleic Acids Research, 5 (5). pp. 1655-1673.

Gupta, Vibha and Gupta, Rakesh K and Khare, Garima and Salunke, Dinakar M and Surolia, Avadhesha and Tyag, Anil K (2010) Structural Ordering of Disordered Ligand-Binding Loops of Biotin Protein Ligase into Active Conformations as a Consequence of Dehydration. In: PLos One, 5 (2).

Gupta, A and Bansal, M (2019) RNA-mediated translation regulation in viral genomes: Computational advances in the recognition of sequences and structures. In: Briefings in Bioinformatics, 21 (4). pp. 1151-1163.

Gupta, AK and Singh, K and Patidar, Y and Sharma, R and Sardesai, AA and Reddy, G and Gopal, B (2022) Allosteric Determinants in High Temperature Requirement A Enzymes Are Conserved and Regulate the Population of Active Conformations. In: ACS Chemical Biology .

Gupta, Alka and Chauhan, VS (1990) Synthetic and conformational studies on dehydroalanine-containing model peptides. In: Biopolymers, 30 (3-4). pp. 395-403.

Gupta, Arvind Kumar and Behera, Debashree and Gopal, Balasubramanian (2018) The crystal structure of Mycobacterium tuberculosis high-temperature requirement A protein reveals an autoregulatory mechanism. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 74 (12). pp. 803-809.

Gupta, Asha and Kumar, Anil and Waghmare, Umesh V and Hegde, MS (2009) Origin of activation of Lattice Oxygen and Synergistic Interaction in Bimetal-Ionic Ce0.89Fe0.1Pd0.01O2-delta Catalyst. In: Chemistry of materials, 21 (20). pp. 4880-4891.

Gupta, Asmita and Bansal, Manju (2014) Local Structural and Environmental Factors Define the Efficiency of an RNA Pseudoknot Involved in Programmed Ribosomal Frameshift Process. In: JOURNAL OF PHYSICAL CHEMISTRY B, 118 (41). pp. 11905-11920.

Gupta, Asmita and Bansal, Manju (2015) Molecular basis for nucleocytoplasmic transport of tRNA by Exportin-t. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). pp. 59-60.

Gupta, Asmita and Bansal, Manju (2016) The role of sequence in altering the unfolding pathway of an RNA pseudoknot: a steered molecular dynamics study. In: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 18 (41). pp. 28767-28780.

Gupta, Asmita and Kailasam, Senthilkumar and Bansal, Manju (2016) Insights into the Structural Dynamics of Nucleocytoplasmic Transport of tRNA by Exportin-t. In: BIOPHYSICAL JOURNAL, 110 (6). pp. 1264-1279.

Gupta, D and Rao, NV and Puri, KD and Matta, L and Surolia, A (1992) Thermodynamic and kinetic studies on the mechanism of binding of methylumbelliferyl glycosides to jacalin. In: Journal of Biological Chemistry, 267 (13). pp. 8909-8918.

Gupta, Dipti and Surolia, Avadhesha (1994) Synthesis of neoglycopeptides and analyses of their biodistributionin vivo to identify tissue specific uptake and novel putative membrane lectins. In: Glycoconjugate Journal, 11 (6). pp. 558-571.

Gupta, G and Rao, SN and Sasisekharan, V (1982) Conformational flexibility of DNA: an extension of the stereochemical guidelines. In: FEBS Letters, 150 (2). pp. 424-428.

Gupta, Garima and Gemma, Emiliano and Oscarson, Stefan and Surolia, Avadhesha (2008) Defining substrate interactions with calreticulin: an isothermal titration calorimetric study. In: Glycoconjugate Journal, 25 (8). pp. 797-802.

Gupta, Garima and Sinha, Sharmistha and Mitra, Nivedita and Surolia, Avadhesha (2009) Probing into the role of conserved N-glycosylation sites in the Tyrosinase glycoprotein family. In: 8th International Symposium on Cell Surface Macromolecules, 2008, Hyderabad, INDIA, pp. 691-695.

Gupta, Garima and Sinha, Sharmistha and Surolia, Avadhesha (2008) Unfolding energetics and stability of banana lectin. In: Proteins: Structure, Function, and Bioinformatics, 72 (2). pp. 754-760.

Gupta, Garima and Surolia, Avadhesha (2010) Glycosphingolipids in microdomain formation and their spatial organization. In: FEBS Letters, 584 (9). 1634 -1641.

Gupta, Garima and Surolia, Avadhesha and Sampathkumar, Srinivasa-Gopalan (2010) Lectin Microarrays for Glycomic Analysis. In: OMICS: A Journal of Integrative Biology, 14 (4). pp. 419-436.

Gupta, Garima and Vishveshwara, Saraswathi and Surolia, Avadhesha (2009) Stability of Dimeric Interface in Banana Lectin: Insight from Molecular Dynamics Simulations. In: IUBMB Life, 61 (3). pp. 252-260.

Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) Polymorphism and conformational flexibility of DNA: right and left handed duplexes. In: International Journal of Biological Macromolecules, 2 (6). pp. 368-380.

Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) Reversal of handedness in DNA: A stable link between RU and LZ helices. In: Biochemical and Biophysical Research Communications, 97 (4). pp. 1258-1267.

Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) A novel Z-structure for poly d(GC).poly d(GC). In: Biochemical and Biophysical Research Communications, 95 (2). pp. 728-733.

Gupta, Goutam and Sasisekharen, V (1978) Theoretical calculations of base-base interactions in nucleic acids: I Stacking interactions in free bases. In: Nucleic Acids Research, 5 (5). pp. 1639-1653.

Gupta, Jyoti and Safdari, Haaris and Mehboob, Hoque (2020) Nanoparticle mediated cancer immunotherapy. In: Seminars in Cancer Biology . (In Press)

Gupta, Kallol and Kumar, Mukesh and Balaram, Padmanabhan (2010) Disulfide Bond Assignments by Mass Spectrometry of Native Natural Peptides: Cysteine Pairing in Disulfide Bonded Conotoxins. In: Analytical Chemistry, 82 (19). pp. 8313-8319.

Gupta, Kallol and Kumar, Mukesh and Chandrashekara, Krishnappa and Krishnan, Kozhalmannom S and Balaram, Padmanabhan (2012) Combined Electron Transfer Dissociation-Collision-Induced Dissociation Fragmentation in the Mass Spectrometric Distinction of Leucine, Isoleucine, and Hydroxyproline Residues in Peptide Natural Products. In: Journal of Proteome Research, 11 (2). pp. 515-522.

Gupta, Kritika and Tripathi, Arti and Sahu, Alishan and Varadarajan, Raghavan (2017) Contribution of the Chromosomal ccdAB Operon to Bacterial Drug Tolerance. In: JOURNAL OF BACTERIOLOGY, 199 (19).

Gupta, Kritika and Varadarajan, Raghavan (2018) Insights into protein structure, stability and function from saturation mutagenesis. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 50 . pp. 117-125.

Gupta, Kritika and Varadarajan, Raghavan and Tripathi, Arti (2017) Contribution of the chromosomal ccdAB operon to bacterial drug tolerance. In: PROTEIN SCIENCE, 26 (1, SI). p. 165.

Gupta, Kuldeepkumar Ramnaresh and Baloni, Priyanka and Indi, Shantinath S and Chatterji, Dipankar (2016) Regulation of Growth, Cell Shape, Cell Division, and Gene Expression by Second Messengers (p)ppGpp and Cyclic Di-GMP in Mycobacterium smegmatis. In: JOURNAL OF BACTERIOLOGY, 198 (9). pp. 1414-1422.

Gupta, N and Jagadish, N and Surolia, A and Suri, A (2017) Heat shock protein 70-2 (HSP70-2) a novel cancer testis antigen that promotes growth of ovarian cancer. In: American Journal of Cancer Research, 7 (6). pp. 1252-1269.

Gupta, Sarika and Babu, Ponnusamy and Surolia, Avadhesha (2010) Biphenyl ethers conjugated CdSe/ZnS core/shell quantum dots and interpretation of the mechanism of amyloid fibril disruption. In: Biomaterials, 31 (26). pp. 6809-6822.

Gupta, Sarika and Chattopadhyay, Tandrika and Singh, Mahendra Pal and Surolia, Avadhesha (2010) Supramolecular insulin assembly II for a sustained treatment of type 1 diabetes mellitus. In: Proc Natl Acad Sci Unit States Am, 107 (30). pp. 13246-13251.

Gupta, Sarika and Chhibber, Manmohan and Sinha, Sharmistha and Surolia, Avadhesha (2007) Design of mechanism-based inhibitors of transthyretin amyloidosis: Studies with biphenyl ethers and new structural templates. In: JOURNAL OF MEDICINAL CHEMISTRY, 50 (23). pp. 5589-5599.

Gupta, Sarika and Chhibber, Manmohan and Sinha, Sharmistha and Surolia, Avadhesha (2007) Design of mechanism-based inhibitors of transthyretin amyloidosis:Studies with biphenyl ethers and new structural templates. In: Journal of Medicinal Chemistry, 50 (23). pp. 5589-5599.

Gupta, Sarika and Singh, Anchal and Yadav, Marshleen and Singh, Kalyan and Rathaur, Sushma (2007) MALDI mass sequencing and characterization of ﬁlarial glutathione-S-transferase. In: Biochemical and Biophysical Research Communications, 356 (2). pp. 381-385.

Gupta, Surbhi and Chatterji, Dipankar (2003) Bimodal Protection of DNA by Mycobacterium smegmatis DNA-binding Protein from Stationary Phase Cells. In: The Journal of Biological Chemistry, 278 (7). pp. 5235-5241.

Gupta, Surbhi and Chatterji, Dipankar (2005) Stress responses in mycobacteria. In: IUBMB Life, 57 (3). pp. 149-159.

Gupta, Surbhi and Pandit, Shashi B and Srinivasan, Narayanaswamy and Chatterji, Dipankar (2002) Proteomics analysis of carbon-starved Mycobacterium smegmatis: Induction of Dps-like protein. In: Protein Engineering, 15 (6). pp. 503-511.

Guru Row, TN and Venaktesan, K and Shyamala, V (1976) Crystal and molecular structure of allo-4-hydroxy-L-proline dihydrate. In: Acta Crystallographica Section B, 32 (12). pp. 3267-3270.

Gurumurthy, GP and Balakrishna, K and Tripti, M and Riotte, Jean and Audry, Stephane and Braun, Jean-Jacques and Lambs, Luc and Shankar, Udaya HN (2015) Sources of major ions and processes affecting the geochemical and isotopic signatures of subsurface waters along a tropical river, Southwestern India. In: ENVIRONMENTAL EARTH SCIENCES, 73 (1). pp. 333-346.

Gurunath, R and Balaram, P (1994) Incorporation of a Potentially Helix-Breaking D-Phe-Pro Sequence into the Center of a Right-Handed 16-Residue Peptide Helix. In: Biochemical and Biophysical Research Communications, 202 (1). pp. 241-245.

Gurunath, R and Balaram, P (1995) A Nonhelical, Multiple beta-Turn Conformation in a Glycine-Rich Heptapeptide Fragment of Trichogin A IV Containing a Single Central alpha-Aminoisobutyric Acid Residue. In: Biopolymers, 35 (1). pp. 21-29.

Gurunath, R and Balaram, Padmanabhan (1995) A nonhelical, multiple β-turn conformation in a glycine-rich heptapeptide fragment of trichogin A IV containing a single central α-aminoisobutyric acid residue. In: Biopolymers, 35 (01). pp. 21-29.

Gurunath, Ramanathan and Beena, TK and Adiga, PR and Balaram, P (1995) Enhancing peptide antigenicity by helix stabilization. In: FEBS Letters, 361 (2-3). pp. 176-178.

H

Haimann, Michaela M and Akdogan, Yasar and Philipp, Reinhard and Varadarajan, Raghavan and Hinderberger, Dariush and Trommer, Wolfgang E (2011) Conformational changes of the chaperone SecB upon binding to a model substrate - bovine pancreatic trypsin inhibitor (BPTI). In: Biological Chemistry, 392 (10). pp. 849-858.

Halder, A and Anto, A and Subramanyan, V and Bhattacharyya, M and Vishveshwara, S and Vishveshwara, S (2020) Surveying the Side-Chain Network Approach to Protein Structure and Dynamics: The SARS-CoV-2 Spike Protein as an Illustrative Case. In: Frontiers in Molecular Biosciences, 7 .

Halder, Swagata and Surolia, Avadhesha and Mukhopadhyay, Chaitali (2016) Dynamics simulation of soybean agglutinin (SBA) dimer reveals the impact of glycosylation on its enhanced structural stability. In: CARBOHYDRATE RESEARCH, 428 . pp. 8-17.

Halder, Swagata and Surolia, Avadhesha and Mukhopadhyay, Chaitali (2015) Impact of glycosylation on stability, structure and unfolding of soybean agglutinin (SBA): an insight from thermal perturbation molecular dynamics simulations. In: GLYCOCONJUGATE JOURNAL, 32 (6). pp. 371-384.

Hameed, Shahul MS and Sarma, Siddhartha P (2012) The Structure of the Thioredoxin-Triosephosphate Isomerase Complex Provides Insights into the Reversible Glutathione-Mediated Regulation of Triosephosphate Isomerase. In: Biochemistry, 51 (1). pp. 533-544.

Hansen, Anne-Marie and Chaerkady, Raghothama and Sharma, Jyoti and Diaz-Mejia, Javier J and Tyagi, Nidhi and Renuse, Santosh and Jacob, Harrys KC and Pinto, Sneha M and Sahasrabuddhe, Nandini A and Kim, Min-Sik and Delanghe, Bernard and Srinivasan, Narayanaswamy and Emili, Andrew and Kaper, James B and Pandey, Akhilesh (2013) The Escherichia coli Phosphotyrosine Proteome Relates to Core Pathways and Virulence. In: PLOS PATHOGENS, 9 (6).

Hansia, P and Guruprasad, N and Vishveshwara, Saraswathi (2006) Ab initio studies on the tri- and diphosphate fragments of adenosine triphosphate. In: Biophysical Chemistry, 119 (2). pp. 127-136.

Hansia, Priti and Ghosh, Amit and Vishveshwara, Saraswathi (2009) Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks. In: Molecular biosystems, 5 (12). pp. 1860-1872.

Hansia, Priti and Guruprasad, N and Vishveshwara, Saraswathi (2006) Ab initio studies on the tri- and diphosphate fragments of adenosine triphosphate. In: Biophysical Chemistry, 119 (2). pp. 127-136.

Hansia, Priti and Vishveshwara, Saraswathi and Pal, Samir Kumar (2006) Tryptophan–water interaction in Monellin: Hydration patterns from molecular dynamics simulation. In: Chemical Physics Letters, 420 (4-6). pp. 512-517.

Hansia, Priti and Vishveshwara, Saraswathi and Pal, Samir Kumar (2006) Tryptophan-water interaction in Monellin:Hydration patterns from molecular dynamics simulations. In: Chemical Physics Letters, 420 (4-6). pp. 512-517.

Hansia,, Priti and Dev, Sagarika and Surolia, Avadhesha and Vishveshwara, Saraswathi (2007) Insight into the early stages of thermal unfolding of peanut agglutinin by molecular dynamics simulations. In: Proteins: Structure, Function, and Genetics, 69 (1). pp. 32-42.

Hareendran, Sangeetha and Hussain, Mansoor and Sen, Dwaipayan and Balakrishnan, Balaji and SathishKumar, Yesupatham and Kalaivani, Vaani and Ramakrishna, Banumathi and Srivastava, Arun and Srivastava, Alok and Jayandharan, Giridhara Rao (2012) Bio-Engineering of Adeno-Associated Virus Serotype (AAV)-2 Capsid at Serine/Threonine Residues Improves Its Transduction Efficiency Both In Vitro and In Vivo. In: Molecular Therapy, 20 (1).

Harijan, Rajesh K and Kiema, Tiila R and Karjalainen, Mikael P and Janardan, Neelanjana and Murthy, MRN and Weiss, Manfred S and Michels, Paul AM and Wierenga, Rik K (2013) Crystal structures of SCP2-thiolases of Trypanosomatidae, human pathogens causing widespread tropical diseases: the importance for catalysis of the cysteine of the unique HDCF loop. In: BIOCHEMICAL JOURNAL, 455 (1). pp. 119-130.

Harinath, S and Sikdar, SK (2005) Inhibition of human TREK-1 channels by caffeine and theophylline. In: Epilepsy Research, 64 (3). pp. 127-135.

Harinath, S and Sikdar, SK (2004) Trichloroethanol enhances the activity ofrecombinant human TREK-1 and TRAAK channels. In: Neuropharmacology, 46 (5). pp. 750-760.

Harini, K and Jayashree, S and Tiwari, V and Vishwanath, S and Sowdhamini, R (2021) Ligand Docking Methods to Recognize Allosteric Inhibitors for G-Protein-Coupled Receptors. In: Bioinformatics and Biology Insights, 15 .

Harini, Veldore Vidya and Aravinda, Subrayashastry and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2005) Molecular Conformation and Packing of Peptide $\beta$ Hairpins in the Solid State: Structures of Two Synthetic Octapeptides Containing 1-Aminocycloalkane-1-Carboxylic Acid Residues at the $i+2$ Position of the $\beta$ Turn. In: Chemistry - A European Journal, 11 (12). pp. 3609-3620.

Hatti, Kaushik and Biswas, Ansuman and Chaudhary, Santosh and Dadireddy, Venkatareddy and Sekar, Kanagaraj and Srinivasan, Narayanaswamy and Murthy, Mathur R N (2017) Structure determination of contaminant proteins using the MarathonMR procedure. In: JOURNAL OF STRUCTURAL BIOLOGY, 197 (3). pp. 372-378.

Hatti, Kaushik and Gulati, Ashutosh and Srinivasan, Narayanaswamy and Murthy, MRN (2016) Determination of crystal structures of proteins of unknown identity using a marathon molecular replacement procedure: structure of Stenotrophomonas maltophilia phosphate-binding protein. In: ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 72 (10). pp. 1081-1089.

Hatti, Kaushik and Mathiharan, Yamuna Kalyani and Srinivasan, Narayanaswamy and Murthy, Mathur RN (2017) Seeing but not believing: the structure of glycerol dehydrogenase initially assumed to be the structure of a survival protein fromSalmonella typhimurium. In: Acta Crystallographica Section D Structural Biology, 73 (7). pp. 609-617. ISSN 2059-7983

Hayrapetyan, A and Tumasyan, A and Adam, W and Andrejkovic, JW and Bergauer, T and Chatterjee, S and Damanakis, K and Dragicevic, M and Hussain, PS and Jeitler, M and Krammer, N and Li, A and Liko, D and Mikulec, I and Schieck, J and SchÃ¶fbeck, R and Schwarz, D and Sonawane, M and Templ, S and Waltenberger, W and Wulz, C-E and Darwish, MR and Janssen, T and Van Mechelen, P and Bols, ES and Dâ��Hondt, J and Dansana, S and De Moor, A and Delcourt, M and Lowette, S and Makarenko, I and MÃ¼ller, D and Tavernier, S and Tytgat, M and Van Onsem, GP and Van Putte, S and Vannerom, D and Clerbaux, B and Das, AK and De Lentdecker, G and Evard, H and Favart, L and Gianneios, P and Hohov, D and Jaramillo, J and Khalilzadeh, A and Khan, FA and Lee, K and Mahdavikhorrami, M and Malara, A and Paredes, S and Thomas, L and Vanden Bemden, M and Vander Velde, C and Vanlaer, P and De Coen, M and Dobur, D and Hong, Y and Knolle, J and Lambrecht, L and Mestdach, G and Mota Amarilo, K and RendÃ³n, C and Samalan, A and Skovpen, K and Van Den Bossche, N and van der Linden, J and Wezenbeek, L and Benecke, A and Bethani, A and Bruno, G and Caputo, C and Delaere, C and Donertas, IS and Giammanco, A and Jain, Sa and Lemaitre, V and Lidrych, J and Mastrapasqua, P and Tran, TT and Wertz, S and Alves, GA and Coelho, E and Hensel, C and Menezes De Oliveira, T and Moraes, A and Rebello Teles, P and Soeiro, M and AldÃ¡ JÃºnior, WL and Alves Gallo Pereira, M and Barroso Ferreira Filho, M and Brandao Malbouisson, H and Carvalho, W and Chinellato, J and Da Costa, EM and Da Silveira, GG and De Jesus Damiao, D and Fonseca De Souza, S and Gomes De Souza, R and Macedo, M and Martins, J and Mora Herrera, C and Mundim, L and Nogima, H and Pinheiro, JP and Santoro, A and Sznajder, A and Thiel, M and Vilela Pereira, A and Bernardes, CA and Calligaris, L and Tomei, TRFP and Gregores, EM and Mercadante, PG and Novaes, SF and Orzari, B and Padula, SS and Aleksandrov, A and Antchev, G and Hadjiiska, R and Iaydjiev, P and Misheva, M and Shopova, M and Sultanov, G and Dimitrov, A and Litov, L and Pavlov, B and Petkov, P and Petrov, A and Shumka, E and Keshri, S and Thakur, S and Cheng, T and Javaid, T and Yuan, L and Hu, Z and Liu, J and Yi, K and Chen, GM and Chen, HS and Chen, M and Iemmi, F and Jiang, CH and Kapoor, A and Liao, H and Liu, Z-A and Sharma, R and Song, JN and Tao, J and Wang, C and Wang, J and Wang, Z and Zhang, H and Agapitos, A and Ban, Y and Levin, A and Li, C and Li, Q and Mao, Y and Qian, SJ and Sun, X and Wang, D and Yang, H and Zhang, L and Zhou, C and You, Z and Jaffel, K and Lu, N and Bauer, G and Gao, X and Lin, Z and Lu, C and Xiao, M and Avila, C and Barbosa Trujillo, DA and Cabrera, A and Florez, C and Fraga, J and Reyes Vega, JA and Mejia Guisao, J and Ramirez, F and Rodriguez, M and Ruiz Alvarez, JD and Giljanovic, D and Godinovic, N and Lelas, D and Sculac, A and Kovac, M and Sculac, T and Bargassa, P and Brigljevic, V and Chitroda, BK and Ferencek, D and Jakovcic, K and Mishra, S and Starodumov, A and Susa, T and Attikis, A and Christoforou, K and Hadjiagapiou, A and Konstantinou, S and Mousa, J and Nicolaou, C and Paizanos, L and Ptochos, F and Razis, PA and Rykaczewski, H and Saka, H and Stepennov, A and Finger, M and Finger, Jr and Kveton, A and Ayala, E and Carrera Jarrin, E and Assran, Y and Elgammal, S and Mahmoud, MA and Mohammed, Y and Ehataht, K and Kadastik, M and Lange, T and Nandan, S and Nielsen, C and Pata, J and Raidal, M and Tani, L and Veelken, C and Kirschenmann, H and Osterberg, K and Voutilainen, M and Bharthuar, S and BrÃ¼cken, E and Garcia, F and Kallonen, KTS and Kinnunen, R and LampÃ©n, T and Lassila-Perini, K and Lehti, S and LindÃ©n, T and Martikainen, L and MyllymÃ¤ki, M and Rantanen, MM and Siikonen, H and Tuominen, E and Tuominiemi, J and Luukka, P and Petrow, H and Besancon, M and Couderc, F and Dejardin, M and Denegri, D and Faure, JL and Ferri, F and Ganjour, S and Gras, P and Hamel de Monchenault, G and Lohezic, V and Malcles, J and Orlandi, F and Portales, L and Rander, J and Rosowsky, A and Sahin, MÃ� and Savoy-Navarro, A and Simkina, P and Titov, M and Tornago, M and Beaudette, F and Buchot Perraguin, A and Busson, P and Cappati, A and Charlot, C and Chiusi, M and Damas, F and Davignon, O and De Wit, A and Ehle, IT and Fontana Santos Alves, BA and Ghosh, S and Gilbert, A and Granier de Cassagnac, R and Hakimi, A and Harikrishnan, B and Kalipoliti, L and Liu, G and Motta, J and Nguyen, M and Ochando, C and Salerno, R and Sauvan, JB and Sirois, Y and Tarabini, A and Vernazza, E and Zabi, A and Zghiche, A and Agram, J-L and Andrea, J and Apparu, D and Bloch, D and Brom, J-M and Chabert, EC and Collard, C and Falke, S and Goerlach, U and Grimault, C and Haeberle, R and Le Bihan, A-C and Meena, M and Saha, G and Sessini, MA and Van Hove, P and Beauceron, S and Blancon, B and Boudoul, G and Chanon, N and Contardo, D and Depasse, P and Dozen, C and El Mamouni, H and Fay, J and Gascon, S and Gouzevitch, M and Greenberg, C and Grenier, G and Ille, B and Laktineh, IB and Lethuillier, M and Mirabito, L and Perries, S and Purohit, A and Vander Donckt, M and Verdier, P and Xiao, J and Lomidze, I and Toriashvili, T and Tsamalaidze, Z and Botta, V and Feld, L and Klein, K and Lipinski, M and Meuser, D and Pauls, A and RÃ¶wert, N and Teroerde, M and Diekmann, S and Dodonova, A and Eich, N and Eliseev, D and Engelke, F and Erdmann, J and Erdmann, M and Fackeldey, P and Fischer, B and Hebbeker, T and Hoepfner, K and Ivone, F and Jung, A and Lee, MY and Mausolf, F and Merschmeyer, M and Meyer, A and Mukherjee, S and Noll, D and Nowotny, F and Pozdnyakov, A and Rath, Y and Redjeb, W and Rehm, F and Reithler, H and Sarkar, U and Sarkisovi, V and Schmidt, A and Sharma, A and Spah, JL and Stein, A and Torres Da Silva De Araujo, F and Wiedenbeck, S and Zaleski, S and Dziwok, C and FlÃ¼gge, G and Haj Ahmad, W and Kress, T and Nowack, A and Pooth, O and Stahl, A and Ziemons, T and Zotz, A and Aarup Petersen, H and Aldaya Martin, M and Alimena, J and Amoroso, S and An, Y and Baxter, S and Bayatmakou, M and Becerril Gonzalez, H and Behnke, O and Belvedere, A and Bhattacharya, S and Blekman, F and Borras, K and Campbell, A and Cardini, A and Cheng, C and Colombina, F and Consuegra RodrÃguez, S and Correia Silva, G and De Silva, M and Eckerlin, G and Eckstein, D and Estevez Banos, LI and Filatov, O and Gallo, E and Geiser, A and Giraldi, A and Guglielmi, V and Guthoff, M and Hinzmann, A and Jafari, A and Jeppe, L and Kaech, B and Kasemann, M and Kleinwort, C and Kogler, R and Komm, M and KrÃ¼cker, D and Lange, W and Leyva Pernia, D and Lipka, K and Lohmann, W and Lorkowski, F and Mankel, R and Melzer-Pellmann, I-A and Mendizabal Morentin, M and Meyer, AB and Milella, G and Mussgiller, A and Nair, LP and NÃ¼rnberg, A and Otarid, Y and Park, J and PÃ©rez AdÃ¡n, D and Ranken, E and Raspereza, A and Rastorguev, D and Ribeiro Lopes, B and RÃ¼benach, J and Saggio, A and Scham, M and Schnake, S and SchÃ¼tze, P and Schwanenberger, C and Selivanova, D and Sharko, K and Shchedrolosiev, M and Sosa Ricardo, RE and Stafford, D and Vazzoler, F and Ventura Barroso, A and Walsh, R and Wang, Q and Wen, Y and Wichmann, K and Wiens, L and Wissing, C and Yang, Y and Zimermmane Castro Santos, A and Albrecht, A and Albrecht, S and Antonello, M and Bein, S and Benato, L and Bollweg, S and Bonanomi, M and Connor, P and El Morabit, K and Fischer, Y and Garutti, E and Grohsjean, A and Haller, J and Jabusch, HR and Kasieczka, G and Keicher, P and Klanner, R and Korcari, W and Kramer, T and Kutzner, V and Labe, F and Lange, J and Lobanov, A and Matthies, C and Moureaux, L and Mrowietz, M and Nigamova, A and Nissan, Y and Paasch, A and Pena Rodriguez, KJ and Quadfasel, T and Raciti, B and Rieger, M and Savoiu, D and Schindler, J and Schleper, P and SchrÃ¶der, M and Schwandt, J and Sommerhalder, M and Stadie, H and SteinbrÃ¼ck, G and Tews, A and Wolf, M and Brommer, S and Burkart, M and Butz, E and Chwalek, T and Dierlamm, A and Droll, A and Faltermann, N and Giffels, M and Gottmann, A and Hartmann, F and Hofsaess, R and Horzela, M and Husemann, U and Kieseler, J and Klute, M and KoppenhÃ¶fer, R and Lawhorn, JM and Link, M and Lintuluoto, A and Maier, B and Maier, S and Mitra, S and Mormile, M and MÃ¼ller, Th and Neukum, M and Oh, M and Pfeffer, E and Presilla, M and Quast, G and Rabbertz, K and Regnery, B and Shadskiy, N and Shvetsov, I and Simonis, HJ and Toms, M and Trevisani, N and Von Cube, RF and Wassmer, M and Wieland, S and Wittig, F and Wolf, R and Zuo, X and Anagnostou, G and Daskalakis, G and Kyriakis, A and Papadopoulos, A and Stakia, A and Kontaxakis, P and Melachroinos, G and Painesis, Z and Panagiotou, A and Papavergou, I and Paraskevas, I and Saoulidou, N and Theofilatos, K and Tziaferi, E and Vellidis, K and Zisopoulos, I and Bakas, G and Chatzistavrou, T and Karapostoli, G and Kousouris, K and Papakrivopoulos, I and Siamarkou, E and Tsipolitis, G and Zacharopoulou, A and Adamidis, K and Bestintzanos, I and Evangelou, I and Foudas, C and Kamtsikis, C and Katsoulis, P and Kokkas, P and Kosmoglou Kioseoglou, PG and Manthos, N and Papadopoulos, I and Strologas, J and BartÃ³k, M and Hajdu, C and Horvath, D and MÃ¡rton, K and RÃ¡dl, AJ and Sikler, F and Veszpremi, V and CsanÃ¡d, M and Farkas, K and Gadallah, MMA and Kadlecsik, Ã� and Major, P and Mandal, K and PÃ¡sztor, G and Veres, GI and Raics, P and Ujvari, B and Zilizi, G and Bencze, G and Czellar, S and Molnar, J and Szillasi, Z and Csorgo, T and Nemes, F and Novak, T and Babbar, J and Bansal, S and Beri, SB and Bhatnagar, V and Chaudhary, G and Chauhan, S and Dhingra, N and Kaur, A and Kaur, H and Kaur, M and Kumar, S and Sandeep, K and Sheokand, T and Singh, JB and Singla, A and Ahmed, A and Bhardwaj, A and Chhetri, A and Choudhary, BC and Kumar, A and Naimuddin, M and Ranjan, K and Saumya, S and Baradia, S and Barman, S and Dutta, S and Sarkar, S and Ameen, MM and Behera, PK and Behera, SC and Jana, P and Kalbhor, P and Komaragiri, JR and Kumar, D and Pujahari, PR and Saha, NR and Sikdar, AK and Verma, S and Dugad, S and Kumar, M and Mohanty, GB and Suryadevara, P and Bala, A and Banerjee, S and Chatterjee, RM and Dewanjee, RK and Guchait, M and Jain, Sh and Jaiswal, A and Majumder, G and Mazumdar, K and Parolia, S and Thachayath, A and Bahinipati, S and Kar, C and Maity, D and Mal, P and Mishra, T and Muraleedharan Nair Bindhu, VK and Naskar, K and Nayak, A and Sadangi, P and Swain, SK and Varghese, S and Vats, D and Acharya, S and Alpana, A and Dube, S and Gomber, B and Hazarika, P and Kansal, B and Laha, A and Sahu, B and Sharma, S and Vaish, KY and Bakhshiansohi, H and Khazaie, E and Zeinali, M and Bashiri, S and Chenarani, S and Etesami, SM and Khakzad, M and Mohammadi Najafabadi, M and Tizchang, S and Grunewald, M and Abbrescia, M and Aly, R and Colaleo, A and Creanza, D and Dâ��Anzi, B and De Filippis, N and De Palma, M and Di Florio, A and Elmetenawee, W and Fiore, L and Iaselli, G and Louka, M and Maggi, G and Maggi, M and Margjeka, I and Mastrapasqua, V and My, S and Nuzzo, S and Pellecchia, A and Pompili, A and Pugliese, G and Radogna, R and Ramirez-Sanchez, G and Ramos, D and Ranieri, A and Silvestris, L and Simone, FM and SÃ¶zbilir, Ã� and Stamerra, A and Venditti, R and Verwilligen, P and Zaza, A and Abbiendi, G and Battilana, C and Bonacorsi, D and Borgonovi, L and Capiluppi, P and Castro, A and Cavallo, FR and Cuffiani, M and Dallavalle, GM and Diotalevi, T and Fabbri, F and Fanfani, A and Fasanella, D and Giacomelli, P and Giommi, L and Grandi, C and Guiducci, L and Lo Meo, S and Lunerti, L and Marcellini, S and Masetti, G and Navarria, FL and Perrotta, A and Primavera, F and Rossi, AM and Rovelli, T and Siroli, GP and Costa, S and Di Mattia, A and Potenza, R and Tricomi, A and Tuve, C and Assiouras, P and Barbagli, G and Bardelli, G and Camaiani, B and Cassese, A and Ceccarelli, R and Ciulli, V and Civinini, C and Dâ��Alessandro, R and Focardi, E and Kello, T and Latino, G and Lenzi, P and Lizzo, M and Meschini, M and Paoletti, S and Papanastassiou, A and Sguazzoni, G and Viliani, L and Benussi, L and Bianco, S and Meola, S and Piccolo, D and Chatagnon, P and Ferro, F and Robutti, E and Tosi, S and Benaglia, A and Boldrini, G and Brivio, F and Cetorelli, F and De Guio, F and Dinardo, ME and Dini, P and Gennai, S and Gerosa, R and Ghezzi, A and Govoni, P and Guzzi, L and Lucchini, MT and Malberti, M and Malvezzi, S and Massironi, A and Menasce, D and Moroni, L and Paganoni, M and Palluotto, S and Pedrini, D and Pinolini, BS and Pizzati, G and Ragazzi, S and Tabarelli de Fatis, T and Buontempo, S and Cagnotta, A and Carnevali, F and Cavallo, N and Fabozzi, F and Iorio, AOM and Lista, L and Paolucci, P and Rossi, B and Sciacca, C and Ardino, R and Azzi, P and Bacchetta, N and Bergnoli, A and Bisello, D and Bortignon, P and Bortolato, G and Bragagnolo, A and Bulla, ACM and Carlin, R and Checchia, P and Dorigo, T and Gasparini, F and Gasparini, U and Lusiani, E and Margoni, M and Marini, F and Meneguzzo, AT and Migliorini, M and Pazzini, J and Ronchese, P and Rossin, R and Simonetto, F and Strong, G and Tosi, M and Triossi, A and Zanetti, M and Zotto, P and Zucchetta, A and Zumerle, G and Abu Zeid, S and AimÃ¨, C and Braghieri, A and Calzaferri, S and Fiorina, D and Montagna, P and Re, V and Riccardi, C and Salvini, P and Vai, I and Vitulo, P and Ajmal, S and Bilei, GM and Ciangottini, D and FanÃ², L and Magherini, M and Mariani, V and Menichelli, M and Moscatelli, F and Rossi, A and Santocchia, A and Spiga, D and Tedeschi, T and Asenov, P and Azzurri, P and Bagliesi, G and Bhattacharya, R and Bianchini, L and Boccali, T and Bossini, E and Bruschini, D and Castaldi, R and Ciocci, MA and Cipriani, M and Dâ��Amante, V and Dellâ��Orso, R and Donato, S and Giassi, A and Ligabue, F and Matos Figueiredo, D and Messineo, A and Musich, M and Palla, F and Rizzi, A and Rolandi, G and Roy Chowdhury, S and Sarkar, T and Scribano, A and Spagnolo, P and Tenchini, R and Tonelli, G and Turini, N and Vaselli, F and Venturi, A and Verdini, PG and Baldenegro Barrera, C and Barria, P and Basile, C and Campana, M and Cavallari, F and Cunqueiro Mendez, L and Del Re, D and Di Marco, E and Diemoz, M and Errico, F and Longo, E and Meridiani, P and Mijuskovic, J and Organtini, G and Pandolfi, F and Paramatti, R and Quaranta, C and Rahatlou, S and Rovelli, C and Santanastasio, F and Soffi, L and Amapane, N and Arcidiacono, R and Argiro, S and Arneodo, M and Bartosik, N and Bellan, R and Bellora, A and Biino, C and Borca, C and Cartiglia, N and Costa, M and Covarelli, R and Demaria, N and Finco, L and Grippo, M and Kiani, B and Legger, F and Luongo, F and Mariotti, C and Markovic, L and Maselli, S and Mecca, A and Migliore, E and Monteno, M and Mulargia, R and Obertino, MM and Ortona, G and Pacher, L and Pastrone, N and Pelliccioni, M and Ruspa, M and Siviero, F and Sola, V and Solano, A and Staiano, A and Tarricone, C and Trocino, D and Umoret, G and Vlasov, E and White, R and Belforte, S and Candelise, V and Casarsa, M and Cossutti, F and De Leo, K and Della Ricca, G and Dogra, S and Hong, J and Huh, C and Kim, B and Kim, DH and Kim, J and Lee, H and Lee, SW and Moon, CS and Oh, YD and Ryu, MS and Sekmen, S and Yang, YC and Kim, MS and Bak, G and Gwak, P and Kim, H and Moon, DH and Asilar, E and Choi, J and Kim, D and Kim, TJ and Merlin, JA and Choi, S and Han, S and Hong, B and Lee, KS and Lee, S and Park, SK and Yoo, J and Goh, J and Yang, S and Kim, HS and Kim, Y and Almond, J and Bhyun, JH and Jun, W and Ko, S and Kwon, H and Lee, J and Oh, BH and Oh, SB and Seo, H and Yang, UK and Yoon, I and Jang, W and Kang, DY and Kang, Y and Kim, S and Ko, B and Lee, JSH and Lee, Y and Park, IC and Roh, Y and Watson, IJ and Ha, S and Yoo, HD and Choi, M and Kim, MR and Yu, I and Beyrouthy, T and Dreimanis, K and Gaile, A and Pikurs, G and Potrebko, A and Seidel, M and Strautnieks, NR and Ambrozas, M and Juodagalvis, A and Rinkevicius, A and Tamulaitis, G and Bin Norjoharuddeen, N and Yusuff, I and Zolkapli, Z and Benitez, JF and Castaneda Hernandez, A and Encinas Acosta, HA and Gallegos MarÃÃ±ez, LG and LeÃ³n Coello, M and Murillo Quijada, JA and Sehrawat, A and Valencia Palomo, L and Ayala, G and Castilla-Valdez, H and Crotte Ledesma, H and De La Cruz-Burelo, E and Heredia-De La Cruz, I and Lopez-Fernandez, R and Mondragon Herrera, CA and SÃ¡nchez HernÃ¡ndez, A and Oropeza Barrera, C and RamÃrez GarcÃa, M and Bautista, I and Pedraza, I and Salazar Ibarguen, HA and Uribe Estrada, C and Bubanja, I and Raicevic, N and Butler, PH and Ahmad, A and Asghar, MI and Awais, A and Awan, MIM and Hoorani, HR and Khan, WA and Avati, V and Grzanka, L and Malawski, M and Bialkowska, H and Bluj, M and Boimska, B and GÃ³rski, M and Kazana, M and Szleper, M and Zalewski, P and Bunkowski, K and Doroba, K and Kalinowski, A and Konecki, M and Krolikowski, J and Muhammad, A and Pozniak, K and Zabolotny, W and Araujo, M and Bastos, D and BeirÃ£o Da Cruz E Silva, C and Boletti, A and Bozzo, M and Camporesi, T and Da Molin, G and Faccioli, P and Gallinaro, M and Hollar, J and Leonardo, N and Niknejad, T and Petrilli, A and Pisano, M and Seixas, J and Varela, J and Wulff, JW and Adzic, P and Milenovic, P and Dordevic, M and Milosevic, J and Rekovic, V and Aguilar-Benitez, M and Alcaraz Maestre, J and Bedoya, CF and Carretero, OM and Cepeda, M and Cerrada, M and Colino, N and De La Cruz, B and Delgado Peris, A and Escalante Del Valle, A and FernÃ¡ndez Del Val, D and FernÃ¡ndez Ramos, JP and Flix, J and Fouz, MC and Gonzalez Lopez, O and Goy Lopez, S and Hernandez, JM and Josa, MI and Moran, D and Morcillo Perez, CM and Navarro Tobar, Ã� and Perez Dengra, C and PÃ©rez-Calero Yzquierdo, A and Puerta Pelayo, J and Redondo, I and Redondo Ferrero, DD and Romero, L and SÃ¡nchez Navas, S and Urda GÃ³mez, L and Vazquez Escobar, J and Willmott, C and de TrocÃ³niz, JF and Alvarez Gonzalez, B and Cuevas, J and Fernandez Menendez, J and Folgueras, S and Gonzalez Caballero, I and GonzÃ¡lez FernÃ¡ndez, JR and Leguina, P and Palencia Cortezon, E and RamÃ³n Ã�lvarez, C and RodrÃguez Bouza, V and Soto RodrÃguez, A and Trapote, A and Vico Villalba, C and Vischia, P and Bhowmik, S and Blanco FernÃ¡ndez, S and Brochero Cifuentes, JA and Cabrillo, IJ and Calderon, A and Duarte Campderros, J and Fernandez, M and Gomez, G and Lasaosa GarcÃa, C and Lopez Ruiz, R and Martinez Rivero, C and Martinez Ruiz del Arbol, P and Matorras, F and Matorras Cuevas, P and Navarrete Ramos, E and Piedra Gomez, J and Scodellaro, L and Vila, I and Vizan Garcia, JM and Jayananda, MK and Kailasapathy, B and Sonnadara, DUJ and Wickramarathna, DDC and Dharmaratna, WGD and Liyanage, K and Perera, N and Wickramage, N and Abbaneo, D and Amendola, C and Auffray, E and Auzinger, G and Baechler, J and Barney, D and BermÃºdez MartÃnez, A and Bianco, M and Bilin, B and Bin Anuar, AA and Bocci, A and Botta, C and Brondolin, E and Caillol, C and Cerminara, G and Chernyavskaya, N and dâ��Enterria, D and Dabrowski, A and David, A and De Roeck, A and Defranchis, MM and Deile, M and Dobson, M and Forthomme, L and Franzoni, G and Funk, W and Giani, S and Gigi, D and Gill, K and Glege, F and Gouskos, L and Haranko, M and Hegeman, J and Huber, B and Innocente, V and James, T and Janot, P and Kaluzinska, O and Laurila, S and Lecoq, P and Leutgeb, E and LourenÃ§o, C and Malgeri, L and Mannelli, M and Marini, AC and Matthewman, M and Mehta, A and Meijers, F and Mersi, S and Meschi, E and Milosevic, V and Monti, F and Moortgat, F and Mulders, M and Neutelings, I and Orfanelli, S and Pantaleo, F and Petrucciani, G and Pfeiffer, A and Pierini, M and Piparo, D and Qu, H and Rabady, D and Rovere, M and Sakulin, H and Scarfi, S and Schwick, C and Selvaggi, M and Shchelina, K and Silva, P and Sphicas, P and Stahl Leiton, AG and Steen, A and Summers, S and Treille, D and Tropea, P and Tsirou, A and Walter, D and Wanczyk, J and Wuchterl, S and Zehetner, P and Zejdl, P and Zeuner, WD and Bevilacqua, T and Caminada, L and Ebrahimi, A and Erdmann, W and Horisberger, R and Ingram, Q and Kaestli, HC and Kotlinski, D and Lange, C and Missiroli, M and Noehte, L and Rohe, T and Aarrestad, TK and Androsov, K and Backhaus, M and Bonomelli, G and Calandri, A and Cazzaniga, C and Datta, K and De Cosa, A and Dissertori, G and Dittmar, M and DonegÃ, M and Eble, F and Galli, M and Gedia, K and Glessgen, F and Grab, C and HÃ¤rringer, N and Harte, TG and Hits, D and Lustermann, W and Lyon, A-M and Manzoni, RA and Marchegiani, M and Marchese, L and Martin Perez, C and Mascellani, A and Nessi-Tedaldi, F and Pauss, F and Perovic, V and Pigazzini, S and Reissel, C and Reitenspiess, T and Ristic, B and Riti, F and Seidita, R and Steggemann, J and Valsecchi, D and Wallny, R and Amsler, C and BÃ¤rtschi, P and Canelli, MF and Cormier, K and HeikkilÃ¤, JK and Huwiler, M and Jin, W and Jofrehei, A and Kilminster, B and Leontsinis, S and Liechti, SP and Macchiolo, A and Meiring, P and Molinatti, U and Reimers, A and Robmann, P and Sanchez Cruz, S and Senger, M and Shokr, E and StÃ¤ger, F and Takahashi, Y and Tramontano, R and Adloff, C and Bhowmik, D and Kuo, CM and Lin, W and Rout, PK and Tiwari, PC and Yu, SS and Ceard, L and Chao, Y and Chen, KF and Chen, PS and Chen, ZG and De Iorio, A and Hou, W-S and Hsu, TH and Kao, YW and Karmakar, S and Khurana, R and Kole, G and Li, YY and Lu, R-S and Paganis, E and Su, XF and Thomas-Wilsker, J and Tsai, LS and Wu, HY and Yazgan, E and Asawatangtrakuldee, C and Srimanobhas, N and Wachirapusitanand, V and Agyel, D and Boran, F and Demiroglu, ZS and Dolek, F and Dumanoglu, I and Eskut, E and Guler, Y and Gurpinar Guler, E and Isik, C and Kara, O and Kayis Topaksu, A and Kiminsu, U and Onengut, G and Ozdemir, K and Polatoz, A and Tali, B and Tok, UG and Turkcapar, S and Uslan, E and Zorbakir, IS and Sokmen, G and Yalvac, M and Akgun, B and Atakisi, IO and GÃ¼lmez, E and Kaya, M and Kaya, O and Tekten, S and Cakir, A and Cankocak, K and Dincer, GG and Komurcu, Y and Sen, S and Aydilek, O and Cerci, S and Epshteyn, V and Hacisahinoglu, B and Hos, I and Kaynak, B and Ozkorucuklu, S and Potok, O and Sert, H and Simsek, C and Zorbilmez, C and Isildak, B and Sunar Cerci, D and Boyaryntsev, A and Grynyov, B and Levchuk, L and Anthony, D and Brooke, JJ and Bundock, A and Bury, F and Clement, E and Cussans, D and Flacher, H and Glowacki, M and Goldstein, J and Heath, HF and Holmberg, M-L and Kreczko, L and Paramesvaran, S and Robertshaw, L and Seif El Nasr-Storey, S and Smith, VJ and Stylianou, N and Walkingshaw Pass, K and Ball, AH and Bell, KW and Belyaev, A and Brew, C and Brown, RM and Cockerill, DJA and Cooke, C and Ellis, KV and Harder, K and Harper, S and Linacre, J and Manolopoulos, K and Newbold, DM and Olaiya, E and Petyt, D and Reis, T and Sahasransu, AR and Salvi, G and Schuh, T and Shepherd-Themistocleous, CH and Tomalin, IR and Williams, T and Bainbridge, R and Bloch, P and Brown, CE and Buchmuller, O and Cacchio, V and Carrillo Montoya, CA and Chahal, GS and Colling, D and Dancu, JS and Das, I and Dauncey, P and Davies, G and Davies, J and Della Negra, M and Fayer, S and Fedi, G and Hall, G and Hassanshahi, MH and Howard, A and Iles, G and Knight, M and Langford, J and LeÃ³n Holgado, J and Lyons, L and Magnan, A-M and Malik, S and Mieskolainen, M and Nash, J and Pesaresi, M and Radburn-Smith, BC and Richards, A and Rose, A and Savva, K and Seez, C and Shukla, R and Tapper, A and Uchida, K and Uttley, GP and Vage, LH and Virdee, T and Vojinovic, M and Wardle, N and Winterbottom, D and Coldham, K and Cole, JE and Khan, A and Kyberd, P and Reid, ID and Abdullin, S and Brinkerhoff, A and Caraway, B and Collins, E and Dittmann, J and Hatakeyama, K and Hiltbrand, J and McMaster, B and Sawant, S and Sutantawibul, C and Wilson, J and Bartek, R and Dominguez, A and Huerta Escamilla, C and Simsek, AE and Uniyal, R and Vargas Hernandez, AM and Bam, B and Chudasama, R and Cooper, SI and Gleyzer, SV and Perez, CU and Rumerio, P and Usai, E and Yi, R and Akpinar, A and Arcaro, D and Cosby, C and Demiragli, Z and Erice, C and Fangmeier, C and Fernandez Madrazo, C and Fontanesi, E and Gastler, D and Golf, F and Jeon, S and Reed, I and Rohlf, J and Salyer, K and Sperka, D and Spitzbart, D and Suarez, I and Tsatsos, A and Yuan, S and Zecchinelli, AG and Benelli, G and Coubez, X and Cutts, D and Hadley, M and Heintz, U and Hogan, JM and Kwon, T and Landsberg, G and Lau, KT and Li, D and Luo, J and Mondal, S and Narain, M and Pervan, N and Sagir, S and Simpson, F and Stamenkovic, M and Venkatasubramanian, N and Yan, X and Zhang, W and Abbott, S and Bonilla, J and Brainerd, C and Breedon, R and Cai, H and Calderon De La Barca Sanchez, M and Chertok, M and Citron, M and Conway, J and Cox, PT and Erbacher, R and Jensen, F and Kukral, O and Mocellin, G and Mulhearn, M and Pellett, D and Wei, W and Yao, Y and Zhang, F and Bachtis, M and Cousins, R and Datta, A and Flores Avila, G and Hauser, J and Ignatenko, M and Iqbal, MA and Lam, T and Manca, E and Nunez Del Prado, A and Saltzberg, D and Valuev, V and Clare, R and Gary, JW and Gordon, M and Hanson, G and Si, W and Wimpenny, S and Branson, JG and Cittolin, S and Cooperstein, S and Diaz, D and Duarte, J and Giannini, L and Guiang, J and Kansal, R and Krutelyov, V and Lee, R and Letts, J and Masciovecchio, M and Mokhtar, F and Pieri, M and Quinnan, M and Sathia Narayanan, BV and Sharma, V and Tadel, M and Vourliotis, E and WÃ¼rthwein, F and Xiang, Y and Yagil, A and Barzdukas, A and Brennan, L and Campagnari, C and Incandela, J and Li, AJ and Masterson, P and Mei, H and Richman, J and Sarica, U and Schmitz, R and Setti, F and Sheplock, J and Stuart, D and VÃ¡mi, TÃ� and Wang, S and Bornheim, A and Cerri, O and Latorre, A and Mao, J and Newman, HB and Reales GutiÃ©rrez, G and Spiropulu, M and Vlimant, JR and Xie, S and Zhu, RY and Alison, J and An, S and Andrews, MB and Bryant, P and Cremonesi, M and Dutta, V and Ferguson, T and Harilal, A and Liu, C and Mudholkar, T and Murthy, S and Palit, P and Paulini, M and Roberts, A and Sanchez, A and Terrill, W and Cumalat, JP and Ford, WT and Hart, A and Hassani, A and Karathanasis, G and Manganelli, N and Perloff, A and Savard, C and Schonbeck, N and Stenson, K and Ulmer, KA and Wagner, SR and Zipper, N and Zuolo, D and Alexander, J and Bright-Thonney, S and Chen, X and Cranshaw, DJ and Fan, J and Fan, X and Hogan, S and Kotamnives, P and Monroy, J and Oshiro, M and Patterson, JR and Reichert, J and Reid, M and Ryd, A and Thom, J and Wittich, P and Zou, R and Albrow, M and Alyari, M and Amram, O and Apollinari, G and Apresyan, A and Bauerdick, LAT and Berry, D and Berryhill, J and Bhat, PC and Burkett, K and Butler, JN and Canepa, A and Cerati, GB and Cheung, HWK and Chlebana, F and Cummings, G and Dickinson, J and Dutta, I and Elvira, VD and Feng, Y and Freeman, J and Gandrakota, A and Gecse, Z and Gray, L and Green, D and Grummer, A and GrÃ¼nendahl, S and Guerrero, D and Gutsche, O and Harris, RM and Heller, R and Herwig, TC and Hirschauer, J and Horyn, L and Jayatilaka, B and Jindariani, S and Johnson, M and Joshi, U and Klijnsma, T and Klima, B and Kwok, KHM and Lammel, S and Lincoln, D and Lipton, R and Liu, T and Madrid, C and Maeshima, K and Mantilla, C and Mason, D and McBride, P and Merkel, P and Mrenna, S and Nahn, S and Ngadiuba, J and Noonan, D and Papadimitriou, V and Pastika, N and Pedro, K and Pena, C and Ravera, F and Reinsvold Hall, A and Ristori, L and Sexton-Kennedy, E and Smith, N and Soha, A and Spiegel, L and Stoynev, S and Strait, J and Taylor, L and Tkaczyk, S and Tran, NV and Uplegger, L and Vaandering, EW and Whitbeck, A and Zoi, I and Aruta, C and Avery, P and Bourilkov, D and Cadamuro, L and Chang, P and Cherepanov, V and Field, RD and Koenig, E and Kolosova, M and Konigsberg, J and Korytov, A and Matchev, K and Menendez, N and Mitselmakher, G and Mohrman, K and Muthirakalayil Madhu, A and Rawal, N and Rosenzweig, D and Rosenzweig, S and Adams, T and Al Kadhim, A and Askew, A and Bower, S and Habibullah, R and Hagopian, V and Hashmi, R and Kim, RS and Kolberg, T and Martinez, G and Prosper, H and Prova, PR and Wulansatiti, M and Yohay, R and Zhang, J and Alsufyani, B and Baarmand, MM and Butalla, S and Das, S and Elkafrawy, T and Hohlmann, M and Kumar Verma, R and Rahmani, M and Yanes, E and Adams, MR and Baty, A and Bennett, C and Cavanaugh, R and Escobar Franco, R and Evdokimov, O and Gerber, CE and Hawksworth, M and Hingrajiya, A and Hofman, DJ and Lee, JH and Lemos, DS and Merrit, AH and Mills, C and Nanda, S and Oh, G and Ozek, B and Pilipovic, D and Pradhan, R and Prifti, E and Roy, T and Rudrabhatla, S and Tonjes, MB and Varelas, N and Wadud, MA and Ye, Z and Alhusseini, M and Blend, D and Dilsiz, K and Emediato, L and Karaman, G and KÃ¶seyan, OK and Merlo, J-P and Mestvirishvili, A and Nachtman, J and Neogi, O and Ogul, H and Onel, Y and Penzo, A and Snyder, C and Tiras, E and Blumenfeld, B and Corcodilos, L and Davis, J and Gritsan, AV and Kang, L and Kyriacou, S and Maksimovic, P and Roguljic, M and Roskes, J and Sekhar, S and Swartz, M and Abreu, A and Alcerro Alcerro, LF and Anguiano, J and Baringer, P and Bean, A and Flowers, Z and Grove, D and King, J and Krintiras, G and Lazarovits, M and Le Mahieu, C and Marquez, J and Minafra, N and Murray, M and Nickel, M and Pitt, M and Popescu, S and Rogan, C and Royon, C and Salvatico, R and Sanders, S and Smith, C and Wilson, G and Allmond, B and Gujju Gurunadha, R and Ivanov, A and Kaadze, K and Kalogeropoulos, A and Maravin, Y and Natoli, J and Roy, D and Sorrentino, G and Rebassoo, F and Wright, D and Baden, A and Belloni, A and Chen, YM and Eno, SC and Hadley, NJ and Jabeen, S and Kellogg, RG and Koeth, T and Lai, Y and Lascio, S and Mignerey, AC and Nabili, S and Palmer, C and Papageorgakis, C and Paranjpe, MM and Wang, L and Bendavid, J and Cali, IA and Dâ��Alfonso, M and Eysermans, J and Freer, C and Gomez-Ceballos, G and Goncharov, M and Grosso, G and Harris, P and Hoang, D and Kovalskyi, D and Krupa, J and Lavezzo, L and Lee, Y-J and Long, K and Novak, A and Paus, C and Rankin, D and Roland, C and Roland, G and Rothman, S and Stephans, GSF and Wyslouch, B and Yang, TJ and Crossman, B and Joshi, BM and Kapsiak, C and Krohn, M and Mahon, D and Mans, J and Marzocchi, B and Pandey, S and Revering, M and Rusack, R and Saradhy, R and Schroeder, N and Strobbe, N and Cremaldi, LM and Bloom, K and Claes, DR and Haza, G and Hossain, J and Joo, C and Kravchenko, I and Siado, JE and Tabb, W and Vagnerini, A and Wightman, A and Yan, F and Yu, D and Bandyopadhyay, H and Hay, L and Iashvili, I and Kharchilava, A and Morris, M and Nguyen, D and Rappoccio, S and Rejeb Sfar, H and Williams, A and Alverson, G and Barberis, E and Dervan, J and Haddad, Y and Han, Y and Krishna, A and Li, J and Lu, M and Madigan, G and Mccarthy, R and Morse, DM and Nguyen, V and Orimoto, T and Parker, A and Skinnari, L and Wood, D and Bueghly, J and Chen, Z and Dittmer, S and Hahn, KA and Liu, Y and Miao, Y and Monk, DG and Schmitt, MH and Taliercio, A and Velasco, M and Agarwal, G and Band, R and Bucci, R and Castells, S and Das, A and Goldouzian, R and Hildreth, M and Ho, KW and Hurtado Anampa, K and Ivanov, T and Jessop, C and Lannon, K and Lawrence, J and Loukas, N and Lutton, L and Mariano, J and Marinelli, N and Mcalister, I and McCauley, T and Mcgrady, C and Moore, C and Musienko, Y and Nelson, H and Osherson, M and Piccinelli, A and Ruchti, R and Townsend, A and Wan, Y and Wayne, M and Yockey, H and Zarucki, M and Zygala, L and Basnet, A and Bylsma, B and Carrigan, M and Durkin, LS and Hill, C and Joyce, M and Nunez Ornelas, M and Wei, K and Winer, BL and Yates, BR and Addesa, FM and Bouchamaoui, H and Das, P and Dezoort, G and Elmer, P and Frankenthal, A and Greenberg, B and Haubrich, N and Kopp, G and Kwan, S and Lange, D and Loeliger, A and Marlow, D and Ojalvo, I and Olsen, J and Shevelev, A and Stickland, D and Tully, C and Bakshi, AS and Barnes, VE and Chandra, S and Chawla, R and Gu, A and Gutay, L and Jones, M and Jung, AW and Kondratyev, D and Koshy, AM and Liu, M and Negro, G and Neumeister, N and Paspalaki, G and Piperov, S and Scheurer, V and Schulte, JF and Stojanovic, M and Thieman, J and Virdi, AK and Wang, F and Xie, W and Dolen, J and Parashar, N and Pathak, A and Acosta, D and Carnahan, T and Ecklund, KM and FernÃ¡ndez Manteca, PJ and Freed, S and Gardner, P and Geurts, FJM and Li, W and Miguel Colin, O and Padley, BP and Redjimi, R and Rotter, J and Yigitbasi, E and Zhang, Y and Bodek, A and de Barbaro, P and Demina, R and Dulemba, JL and Garcia-Bellido, A and Hindrichs, O and Khukhunaishvili, A and Parmar, N and Parygin, P and Popova, E and Taus, R and Goulianos, K and Chiarito, B and Chou, JP and Clark, SV and Gadkari, D and Gershtein, Y and Halkiadakis, E and Heindl, M and Houghton, C and Jaroslawski, D and Karacheban, O and Laflotte, I and Lath, A and Montalvo, R and Nash, K and Routray, H and Saha, P and Salur, S and Schnetzer, S and Somalwar, S and Stone, R and Thayil, SA and Thomas, S and Vora, J and Wang, H and Acharya, H and Ally, D and Delannoy, AG and Fiorendi, S and Higginbotham, S and Holmes, T and Kanuganti, AR and Karunarathna, N and Lee, L and Nibigira, E and Spanier, S and Aebi, D and Ahmad, M and Bouhali, O and Eusebi, R and Gilmore, J and Huang, T and Kamon, T and Luo, S and Mueller, R and Overton, D and Rathjens, D and Safonov, A and Akchurin, N and Damgov, J and Hegde, V and Hussain, A and Kazhykarim, Y and Lamichhane, K and Mankel, A and Peltola, T and Volobouev, I and Appelt, E and Chen, Y and Greene, S and Gurrola, A and Johns, W and Kunnawalkam Elayavalli, R and Melo, A and Romeo, F and Sheldon, P and Tuo, S and Velkovska, J and Viinikainen, J and Cardwell, B and Cox, B and Hakala, J and Hirosky, R and Ledovskoy, A and Neu, C and Perez Lara, CE and Karchin, PE and Aravind, A and Black, K and Bose, T and Dasu, S and De Bruyn, I and Everaerts, P and Galloni, C and He, H and Herndon, M and Herve, A and Koraka, CK and Lanaro, A and Loveless, R and Madhusudanan Sreekala, J and Mallampalli, A and Mohammadi, A and Parida, G and PÃ©trÃ©, L and Pinna, D and Savin, A and Shang, V and Smith, WH and Teague, D and Tsoi, HF and Vetens, W and Warden, A and Afanasiev, S and Andreev, V and Andreev, Yu and Aushev, T and Azarkin, M and Azhgirey, I and Babaev, A and Blinov, V and Boos, E and Borshch, V and Budkouski, D and Chekhovsky, V and Chistov, R and Danilov, M and Dermenev, A and Dimova, T and Druzhkin, D and Dubinin, M and Dudko, L and Ershov, A and Gavrilov, G and Gavrilov, V and Gninenko, S and Golovtcov, V and Golubev, N and Golutvin, I and Gorbunov, I and Gribushin, A and Ivanov, K and Ivanov, Y and Kachanov, V and Karjavine, V and Karneyeu, A and Kim, V and Kirakosyan, M and Kirpichnikov, D and Kirsanov, M and Klyukhin, V and Kodolova, O and Konstantinov, D and Korenkov, V and Korotkikh, V and Kozyrev, A and Krasnikov, N and Lanev, A and Levchenko, P and Lychkovskaya, N and Makarenko, V and Malakhov, A and Matveev, V and Murzin, V and Nikitenko, A and Obraztsov, S and Oreshkin, V and Palichik, V and Perelygin, V and Petrushanko, S and Polikarpov, S and Popov, V and Radchenko, O and Ryutin, R and Savina, M and Savrin, V and Shalaev, V and Shmatov, S and Shulha, S and Skovpen, Y and Slabospitskii, S and Smirnov, V and Snigirev, A and Sosnov, D and Sulimov, V and Tcherniaev, E and Terkulov, A and Teryaev, O and Tlisova, I and Toropin, A and Uvarov, L and Uzunian, A and Vorobyev, A and Voytishin, N and Yuldashev, BS and Zarubin, A and Zhizhin, I and Zhokin, A and Collaboration, CMS (2024) Observation of the Formula Presented decay and studies of the Formula Presented baryon in proton-proton collisions at Formula Presented. In: Physical Review D, 110 (1).

Hegde, RP and Aravinda, S and Rai, R and Kaul, R and Vijayalakshmi, S and Rao, RB and Shamala, N and Balaram, P (2008) Conformation of di-n-propylglycine residues (Dpg) in peptides: crystal structures of a type I 'beta-turn forming tetrapeptide and an alpha-helical tetradecapeptide. In: Journal of Peptide Science, 141 (5). pp. 648-659.

Hegde, Raghurama P and Aravinda, Subrayashastry and Rai, Rajkishor and Kaul, Ramesh and Vijayalakshmi, Sarojini and Rao, R Balaji and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Conformation of di-n-propylglycine residues (Dpg) in peptides: crystal structures of a type I-turn forming tetrapeptide and an -helical tetradecapeptide. In: Journal of Peptide Science, 14 (5). pp. 648-659.

Hegde, Subray S and Kumar, Ameeta R and Ganesh, Krishna N and Swaminathan, Chittoor P and Khan, M Islam (1998) Thermodynamics of ligand (substrate end product) binding to endoxylanase from Chainia sp. (NCL-82-5-1): isothermal calorimetry and fluorescence titration studies. In: Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 1388 (01). pp. 93-100.

Heinemann, U and Alings, C and Bansal, Manju (1992) Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA. In: The EMBO Journal, 11 (5). 1931-1939 .

Hema, M and Vishnu Vardhan, GP and Savithri, HS and Murthy, RNM (2018) Emerging trends in the development of plant virus-based nanoparticles and their biomedical applications. [Book Chapter]

Hinge , AS and Limaye , LS and Surolia , A and Kale , VP (2010) In vitro protection of umbilical cord blood-derived primitive hematopoietic stem progenitor cell pool by mannose-specific lectins via antioxidant mechanisms. In: Transfusion, 50 (8). pp. 1815-1826.

Hirdyesh, Mishra and Sanjay, Pant and Tripathi, Hera B (2008) Temperature-dependent time-resolved fluorescence study of cinchonine alkaloid dication. In: Journal of Fluorescence, 18 (1). pp. 17-27.

Hiremath, CN and Munshi, SK and Murthy, MRN (1990) Structure of Belladonna Mottle Virus: Cross-Rotation Function Studies with Southern Bean Mosaic Virus. In: Acta Crystallographica, Section B: Structural Science, 46 (4). pp. 562-567.

Holliday, Gemma L and Bairoch, Amos and Bagos, Pantelis G and Chatonnet, Arnaud and Craik, David J and Finn, Robert D and Henrissat, Bernard and Landsman, David and Manning, Gerard and Nagano, Nozomi and O'Donovan, Claire and Pruitt, Kim D and Rawlings, Neil D and Saier, Milton and Sowdhamini, Ramanathan and Spedding, Michael and Srinivasan, Narayanaswamy and Vriend, Gert and Babbitt, Patricia C and Bateman, Alex (2015) Key challenges for the creation and maintenance of specialist protein resources. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 83 (6). pp. 1005-1013.

Honnuraiah, Suraj and Narayanan, Rishikesh (2013) A Calcium-Dependent Plasticity Rule for HCN Channels Maintains Activity Homeostasis and Stable Synaptic Learning. In: PLOS ONE, 8 (2).

Hosahudya, Gopi N and Roy, Rituparna S and Raghothama, Srinivasa R and Karle, Isabella L (2002) Beta-Hairpins Generated from Hybrid Peptide Sequences Containing both Alpha- and Beta-Amino Acids. In: Helvetica Chimica Acta, 85 (10). pp. 3313-3330.

Hosur, MV and Nair, Bindu and Satyamurthy, P and Misquith, S and Surolia, A and Kannan, KK (1995) X-ray Structure of Gelonin at 1.8 Å Resolution. In: Journal Of Molecular Biology, 250 (3). pp. 368-380.

Hu, Xuebo and Saha, Piyali and Chen, Xiaoyue and Kim, Dogeun and Devarasetty, Mahesh and Varadarajan, Raghavan and Jin, Moonsoo M. (2012) Cell Surface Assembly of HIV gp41 Six-Helix Bundles for Facile, Quantitative Measurements of Hetero-oligomeric Interactions. In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 134 (36). pp. 14642-14645.

Hussain, N and Apotikar, A and Pidathala, S and Mukherjee, S and Burada, AP and Sikdar, SK and Vinothkumar, KR and Penmatsa, A (2024) Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms. In: Nature Communications, 15 (1).

I

Iengar, Prathima (2018) Identifying pathways affected by cancer mutations. In: GENOMICS, 110 (5). pp. 318-328.

Iengar, Prathima (2012) An analysis of substitution, deletion and insertion mutations in cancer genes. In: NUCLEIC ACIDS RESEARCH, 40 (14). pp. 6401-6413.

Iengar, Prathima and Joshi, NV (2009) Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum. In: BMC Genomics, 10 (18). pp. 1-21.

Iengar, Prathima and Joshi, NV and Balaram, Padmanabhan (2006) Conformational and Sequence Signatures in $\beta$ Helix Proteins. In: Structure, 14 (3). pp. 529-542.

Iengar, Prathima and Ramakrishnan, C (1999) Knowledge-based modeling of the serine protease triad into non-proteases. In: Protein Engineering, 12 (8). pp. 649-655.

Indu, S and Kochat, V and Thakurela, S and Ramakrishnan, C and Varadarajan, Raghavan (2011) Conformational analysis and design of cross-strand disulfides in antiparallel beta-sheets. In: Proteins: Structure, Function, and Genetics, 79 (1). pp. 244-260.

Indu, S and Kumar, Senthil T and Thakurela, Sudhir and Gupta, Mansi and Bhaskara, Ramachandra M and Ramakrishnan, C and Varadarajan, Raghavan (2010) Disulfide conformation and design at helix N-termini. In: Proteins: Structure, Function, and Genetics, 78 (5). pp. 1228-1242.

Iqbal, M and Balaram, P (1982) Aggregation of Apolar Peptides in Organic Solvents. Concentration Dependence of 1H-NMR Parameters for Peptide NH Groups in $3_{10}$ Helical Decapeptide Fragment of Suzukacillin. In: Biopolymers, 21 (7). pp. 1427-1433.

Iqbal, M and Balaram, P (1982) Aggregation of apolar peptides in organic solvents. Concentration dependence of 1H-nmr parameters for peptide NH groups in 310 helical decapeptide fragment of suzukacillin. In: Biopolymers, 21 (7). 1427 -1433.

Iqbal, M and Balaram, P (1981) Membrane Channel Forming Polypeptides. 270-MHz Hydrogen-1 Nuclear Magnetic Resonance Studies on the Conformation of the 11-21 Fragment of Suzukacillin. In: Biochemistry, 20 (17). pp. 4866-4871.

Iqbal, M and Balaram, P (1981) Membrane Channel Forming Polypeptides. 270-MHz Proton Magnetic Resonance Studies of the Aggregation of the 11-21 Fragment of Suzukacillin in Organic Solvents. In: Biochemistry, 20 (25). pp. 7278-7284.

Iqbal, M and Balaram, P (1981) Synthesis and conformational studies of the membrane active peptide antibiotic, suzukacillin. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 96.

Iqbal, M and Balaram, P (1982) The helical conformations of 14- and 16-residue fragments of suzukacillin, a membrane channel-forming polypeptide. In: Biochimica et Biophysica Acta (BBA), 706 (2). pp. 179-187.

Iqbal, M and Balaram, P and Showell, HJ and Freer, RJ and Becker, EL (1984) Conformationally constrained chemotactic peptide analogs of high biological activity. In: FEBS Letters, 165 (2). pp. 171-174.

Iqbal, M and Nagaraj, R and Balaram, Padmanabhan (1981) H N.M.R. studies of protected alpha-aminoisobutyric acid containing peptides. Chemical shift nonequivalence of benzyloxycarbonyl methylene protons. In: International Journal of Peptide and Protein Research International Journal of Peptide and Protein Research, 18 (2). pp. 208-213.

Iqbal, M and Shivaji, S and Vijayasarathy, S and Balaram, P (1980) Synthetic peptides as chemoattractants for bull spermatozoa structure activity correlations. In: Biochemical and Biophysical Research Communications, 96 (1). pp. 235-242.

Isabella, L and Karle, IL and Flippen-Anderson, Judith L and Sukumar, M and Uma, K and Balaram, P (1991) Modular design of synthetic protein mimics. Crystal structure of two seven-residue helical peptide segments linked by .epsilon.-aminocaproic acid. In: Journal of the American Chemical Society, 113 (10). 3952 -3956.

Isabella, L Karle and Judith, L Flippen-Anderson and Uma, K and Sukumar, M and Balaram, P (1990) Modular design of synthetic protein mimics. Crystal structures, assembly, and hydration of two 15- and 16-residue apolar, leucyl-rich helical peptides. In: Biochemistry, 112 (25). pp. 9350-9356.

Ishizaki, H and Balaram, P and Nagaraj, R and Venkatachalapathi, YV and Tu, AT (1981) Determination of beta-turn conformation by laser Raman spectroscopy. In: Biophysical Journal, 36 (3). pp. 509-517.

Ithayaraja, M and Janardan, N and Wierenga, Rik K and Savithri, HS and Murthy, MRN (2016) Crystal structure of a thiolase from Escherichia coli at 1.8 angstrom resolution. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 72 (7). pp. 534-544.

Iyer, Divyaanka and Vartak, Supriya V and Mishra, Archita and Goldsmith, Gunaseelan and Kumar, Sujeet and Srivastava, Mrinal and Hegde, Mahesh and Gopalakrishnan, Vidya and Glenn, Mark and Velusamy, Mahesh and Choudhary, Bibha and Kalakonda, Nagesh and Karki, Subhas S and Surolia, Avadhesha and Raghavan, Sathees C (2016) Identification of a novel BCL2-specific inhibitor that binds predominantly to the BH1 domain. In: FEBS JOURNAL, 283 (18). pp. 3408-3437.

Iyer, Lakshmanan K and Saraswathi, Vishveshwara (1996) Threonine mutations in proline helix II of bacteriorhodopsin: a molecular dynamics study. In: Joournal of Molecular Structure (Theochem), 361 (1-3). pp. 269-281.

Iyer, Lakshmanan K and Vishveshwara, Saraswathi (1995) A model for transmembrane helix with a cis-Proline in the middle. In: Febs Letters, 374 (1). pp. 21-24.

Iyer, Lakshmanan K and Vishveshwara, Saraswathi (1996) The stability of transmembrane helices: A molecular dynamics study on the isolated helices of bacteriorhodopsin. In: Biopolymers, 38 (3). pp. 401-422.

Iyer, SS and Srivastava, A (2020) Degeneracy in molecular scale organization of biological membranes. In: Soft Matter, 16 (29). pp. 6752-6764.

Iyer, SS and Srivastava, A (2024) Membrane lateral organization from potential energy disconnectivity graph. In: Biophysical Chemistry, 313 .

Iyer, Sahithya S and Tripathy, Madhusmita and Srivastava, Anand (2018) Fluid Phase Coexistence in Biological Membrane: Insights from Local Nonaffine Deformation of Lipids. In: BIOPHYSICAL JOURNAL, 115 (1). pp. 117-128.

Iyyappan, Y and Dhayabaran, V and Elayappan, M and Chaudhary, SK and Palaniappan, C and Kanagaraj, S (2023) Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus. In: Proteins: Structure, Function and Bioinformatics .

J

Jacob, ANK and Murthy, MRN and Savithri, HS (1992) Nucleotide sequence of the 3' terminal region of belladonna mottle virus-Iowa (renamed Physalis mottle virus) RNA and an analysis of the relationships of tymoviral coat proteins. In: Archives of Virology, 123 (3-4). pp. 367-377.

Jacob, ANK and Murthy, MRN and Savithri, HS (1992) Nucleotide sequence of the 3terminal region of belladonna mottle virus (renamed Physalis mottle virus) RNA and analysis of the evolutionary relationships among tymoviral coat proteins. In: Archives of Virology, 123 (3-4). pp. 367-377.

Jacob, Jose (1988) $Ca^{2+}$ ionophores inhibit superoxide generation by chemotactic peptide in rabbit neutrophils and the correlation with intracellular calcium. In: Molecular and Cellular Biochemistry, 84 (1). pp. 97-103.

Jacob, Jose (1988) Linear gramicidin activates neutrophil functions and the activation is blocked by chemotactic peptide receptor antagonist. In: FEBS Letters, 231 (1). pp. 139-142.

Jadhav, PV and Sinha, VK and Chugh, S and Kotyada, C and Bachhav, D and Singh, R and Rothweiler, U and Singh, M (2020) 2.09â� Ã Resolution structure of E. coli HigBA toxin-antitoxin complex reveals an ordered DNA-binding domain and intrinsic dynamics in antitoxin. In: The Biochemical journal, 477 (20). pp. 4001-4019.

Jagadeesan, S and Robert, SD and Venkatesan, P and Sundararaj, R and Soundararajan, K and Nithianantham, JJ (2024) Crystal structure and Hirshfeld surface analysis of 6,6â�²-dimethyl-2,2â�²-bipyridine-1,1â�²-diium tetrachloridocobaltate(II). In: Acta Crystallographica Section E: Crystallographic Communications, 80 (Pt 7). pp. 709-712.

Jagadeeswaran , P and Cherayil , JD and Pattabiraman , N and Sasisekharan , V (1978) Computer Method for Predicting Sequence of Transfer-RNA from its Enzymatic Digestion Products Based on Secondary Structure of Transfer-RNA. In: Indian Journal of Biochemistry & Biophysics, 15 (2). 47-48 .

Jagannath, MR and Kesavulu, MM and Deepa, R and Sastri, Narayan P and Kumar, Senthil S and Suguna, K and Rao, Durga C (2006) N- and C-Terminal Cooperation in Rotavirus Enterotoxin: Novel Mechanism of Modulation of the Properties of a Multifunctional Protein by a Structurally and Functionally Overlapping Conformational Domain. In: Journal of Virology, 80 (1). pp. 412-425.

Jagannath, Swaminathan and Sabareesh, Varatharajan (2007) Peptide Fragment Ion Analyser (PFIA): a simple and versatile tool for the interpretation of tandem mass spectrometric data and de novo sequencing of peptides. In: Rapid Communications in Mass Spectrometry, 21 (18). pp. 3033-3038.

Jagannatha, HM and Sharma, Umender K and Ramaseshan, Tara and Surolia, A and Balganesh, TS (1991) Identification of carbohydrate structures as receptors for localised adherent enteropathogenic Escherichia coli. In: Microbial Pathogenesis, 11 (4). pp. 259-268.

Jain, A and Narayanan, R (2020) Degeneracy in the emergence of spike-triggered average of hippocampal pyramidal neurons. In: Scientific Reports, 10 (1).

Jain, Pankaj C and Patel, Siddharth and Kumar, Prasanth and Varadarajan, Raghavan (2016) Structural and Mechanistic Insights Derived from Saturation Mutagenesis of CcdB. In: BIOPHYSICAL JOURNAL, 110 (3, 1). 42A.

Jain, Pankaj C and Varadarajan, Raghavan (2014) A rapid, efficient, and economical inverse polymerase chain reaction-based method for generating a site saturation mutant library. In: ANALYTICAL BIOCHEMISTRY, 449 . pp. 90-98.

Jain, S and Saleem, Q and Mutsuddi, M and Chowdhary, N and Brahmachari, SK (1997) Repeats at the Machado-Joseph locus in bipolar disorder and schizophrenia. In: American Journal of Medical Genetics, 74 (6). p. 609.

Jain, S and Sekhar, A (2024) Transient excited states of the metamorphic protein Mad2 and their implications for function. In: Proteins: Structure, Function and Bioinformatics .

Jain, Vikas and Kumar, Manish and Chatterji, Dipankar (2006) ppGpp: Stringent response and survival. In: Journal Of Microbiology, 44 (1). pp. 1-10.

Jain, Vikas and Saleem-Batcha, Raspudin and Chatterji, Dipankar (2007) Synthesis and hydrolysis of pppGpp in mycobacteria: A ligand mediated conformational switch in Rel. In: Biophysical Chemistry, 127 (1-2). pp. 41-50.

Jain, Vikas and Sujatha, Subbanna and Ojha, Anil Kumar and Chatterji, Dipankar (2005) Identification and characterization of rel promoter element of Mycobacterium tuberculosis. In: Gene, 351 . pp. 149-157.

Jaiswal, Ravi K and Prabha, Tangirala Surya and Manjeera, Gowravaram and Gopal, Balasubramanian (2013) Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of sigma-factor activity by proteolysis. In: Nucleic Acids Research, 41 (5). pp. 3414-3423.

Jaiswal, Ravi Kumar and Manjeera, G and Gopal, B (2010) Role of a PAS sensor domain in the Mycobacterium tuberculosis transcription regulator Rv1364c. In: Biochemical and Biophysical Research Communications, 398 (3). pp. 342-349.

Jaiswar, P and Bhate, M and Surolia, A (2024) Mitigation of experimental ER stress and diabetes mellitus induced peripheral neuropathy by autophagy promoter, 6-BIO. In: BioFactors .

Jaiswar, P and Bhate, M and Surolia, A (2023) Promotion of degradative autophagy by 6-bromoindirubin-3â�²-oxime attenuates neuropathy. In: BioFactors .

Jaladeep, A and Varghese, CN and Sekhar, A (2021) Measuring radiofrequency fields in NMR spectroscopy using offset-dependent nutation profiles. In: Journal of Magnetic Resonance, 330 .

Jamithireddy, AK and Runthala, A and Gopal, B (2020) Evaluation of specificity determinants in Mycobacterium tuberculosis Ï�/anti-Ï� factor interactions. In: Biochemical and Biophysical Research Communications, 521 (4). pp. 900-906.

Jamithireddy, Anil K and Samajdar, Rudra N and Gopal, B and Bhattacharyya, Aninda J (2017) Determination of Redox Sensitivity in Structurally Similar Biological Redox Sensors. In: JOURNAL OF PHYSICAL CHEMISTRY B, 121 (29). pp. 7005-7015.

Janaki, C and Gowri, VS and Srinivasan, N (2021) Master Blaster: an approach to sensitive identification of remotely related proteins. In: Scientific Reports, 11 (1).

Janaki, Chintalapati and Malini, Manoharan and Tyagi, Nidhi and Srinivasan, Narayanaswamy (2020) Unity and diversity among viral kinases. In: GENE, 723 .

Janardan, Neelanjana and Harijan, Rajesh K and Kiema, Tiila-Riikka and Wierenga, Rikkert K and Murthy, MRN (2015) Structural characterization of a mitochondrial 3-ketoacyl-CoA (T1)-like thiolase from Mycobacterium smegmatis. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (12). pp. 2479-2493.

Janardan, Neelanjana and Harijan, Rajesh K and Wierenga, Rikkert K and Murthy, Mathur RN (2012) Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis. In: PLOS ONE, 7 (7).

Janardan, Neelanjana and Paul, Anju and Harijan, Rajesh K and Wierenga, Rikkert K and Murthy, MRN (2011) Cloning, expression, purification and preliminary X-ray diffraction studies of a putative Mycobacterium smegmatis thiolase. In: Acta Crystallographica Section F, 67 (Part 7). pp. 817-820.

Jani, RA and Purushothaman, L and Sviderskaya, E and Bennett, D and Raposo, G and Setty, Gangi S (2014) STX13 controls the melanosome biogenesis through its regulated endosomal fusion events. In: ASCB/IFCB Meeting, DEC 06-10, 2014, Philadelphia, PA.

Jansen van Vuren, P and McAuley, AJ and Kuiper, MJ and Singanallur, NB and Bruce, MP and Riddell, S and Goldie, S and Mangalaganesh, S and Chahal, S and Drew, TW and Blasdell, KR and Tachedjian, M and Caly, L and Druce, JD and Ahmed, S and Khan, MS and Malladi, SK and Singh, R and Pandey, S and Varadarajan, R and Vasan, SS (2022) Highly Thermotolerant SARS-CoV-2 Vaccine Elicits Neutralising Antibodies against Delta and Omicron in Mice. In: Viruses, 14 (4).

Jayanthi, S and Chatterjee, Bhaswati and Raghothama, S (2009) Natural Abundant Solid State NMR Studies in Designed Tripeptides for Differentiation of Multiple Conformers. In: Biopolymers, 91 (10). pp. 851-860.

Jayaprakash, NG and Sarkar, DK and Surolia, A (2023) Atomic visualization of flipped-back conformations of high mannose glycans interacting with cargo lectins: An MD simulation perspective. In: Proteins: Structure, Function and Bioinformatics .

Jayaprakash, NG and Singh, A and Vivek, R and Yadav, S and Pathak, S and Trivedi, J and Jayaraman, N and Nandi, D and Mitra, D and Surolia, A (2020) The barley lectin, horcolin, binds high-mannose glycans in a multivalent fashion, enabling high-affinity, specific inhibition of cellular HIV infection. In: Journal of Biological Chemistry, 295 (34). pp. 12111-12129.

Jayaprakash, NG and Surolia, A (2021) Spike Protein and the Various Cell-Surface Carbohydrates: An Interaction Study. In: ACS Chemical Biology .

Jayaprakash, Nisha Grandhi and Surolia, Avadhesha (2017) Role of glycosylation in nucleating protein folding and stability. In: BIOCHEMICAL JOURNAL, 474 (14). pp. 2333-2347.

Jayarapu, Krupakar and Chittoor, Swaminathan P and Puspendu, Das K and Avadhesha, Surolia and Sunil, Podder K (1999) Calorimetric studies on the stability of the ribosome-inactivating protein abrin II: effects of pH and ligand binding. In: Biochemical Journal, 338 (2). pp. 273-279.

Jayashree, AN and Suresh, CG and Vijayan, M and Toniolo, C and Bonora, GM (1987) Incipient Type II $\beta$ -Turn, Internal Water Bridge and Head-to-Tail Sequence in the Structure of Tri-$\alpha$ -Aminoisobutyric Acid Dihydrate. In: Acta Crystallographica, Section C: Crystal Structure Communications, C43 (8). pp. 1618-1621.

Jayashree, Srinivasan and Murugavel, Pavalam and Sowdhamini, Ramanathan and Srinivasan, Narayanaswamy (2019) Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions. In: BIOLOGY DIRECT, 14 .

Jebasingh, S Emmanuel Joshua and Lakshmikandan, M and Rajesh, RP and Raja, P (2013) Biodegradation of acrylamide and purification of acrylamidase from newly isolated bacterium Moraxella osloensis MSU11. In: INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 85 (SI). pp. 120-125.

Jeffrey, GA and Pople, JA and Binkley, JS and Vishveshwara, S (1978) Application of ab initio molecular orbital calculations to the structural moieties of carbohydrates. 3. In: Journal Of The American Chemical Society, 100 (2). pp. 373-379.

Jena, NR and Bansal, Manju (2011) Mutagenicity associated with O6-methylguanine-DNA damage and mechanism of nucleotide flipping by AGT during repair. In: Physical Biology, 8 (4).

Jena, NR and Bansal, Manju and Mishra, PC (2016) Conformational stabilities of iminoallantoin and its base pairs in DNA: implications for mutagenicity. In: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 18 (18). pp. 12774-12783.

Jena, NR and Shukla, PK and Jena, HS and Mishra, PC and Suhai, S (2009) O6-Methylguanine Repair by O6-Alkylguanine-DNA Alkyltransferase. In: Journal of physical chemistry B, 113 (51). pp. 16285-16290.

Jena, Nihar R (2012) Binding of BIS like and other ligands with the GSK-3 beta kinase: a combined docking and MM-PBSA study. In: Journal of Molecular Modeling, 18 (2). pp. 631-644.

Jena, Nihar Ranjan and Bansal, Manju (2011) How does AGT detect and repair O6-methyguanine-DNA damage. In: American Chemical Society, National Meeting, 242 .

Jeyakanthan, J and Yogavel, M and Rajan, Joseph T and Velmurugan, D and Sekar, K (2002) Crystal and Molecular Structure of an Acridinedione. In: Crystal Research and Technology, 37 (9). 1029 -1037.

Jeyakanthan, Jeyaraman and Thamotharan, Subbiah and Panjikar, Santosh and Kitamura, Yoshiaki and Nakagawa, Noriko and Shinkai, Akeo and Kuramitsu, Seiki and Yokoyama, Shigeyuki (2010) Expression, purification and X-ray analysis of 1,3-propanediol dehydrogenase (Aq_1145) from Aquifex aeolicus VF5. In: Acta Crystallographica Section F, 66 (Part 2). pp. 184-186.

Jeyakanthan, Jeyaraman and Thamotharan, Subbiah and Velmurugan, Devadasan and Rao, Vaijayanthimala Surya Narayna and Nagarajan, Shanthi and Shinkai, Akeo and Kuramitsu, Seiki and Yokoyama, Shigeyuki (2009) New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK). In: Acta Crystallographica Section F Structural Biology and Crystallization Communications, 65 (Part 1). pp. 978-986.

Jeyaprakash, Arockia A and Jayashree, G and Mahanta, SK and Swaminathan, CP and Sekar, K and Surolia, A and Vijayan, M (2005) Structural Basis for the Energetics of Jacalin-Sugar Interactions: Promiscuity Versus Specificity. In: Journal of Molecular Biology, 347 (1). pp. 181-188.

Jeyaprakash, Arockia A and Katiyar, S and Swaminathan, CP and Sekar, K and Surolia, A and Vijayan, M (2003) Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study. In: Journal of Molecular Biology, 332 (1). pp. 217-228.

Jeyaprakash, Arockia A and Rani, Geetha P and Reddy, Banuprakash G and Banumathi, S and Betzel, C and Sekar, K and Surolia, A and Vijayan, M (2002) Crystal Structure of the Jacalin–T-antigen Complex and a Comparative Study of Lectin–T-antigen Complexes. In: Journal of Molecular Biology, 321 (4). pp. 637-645.

Jeyaprakash, Arockia A and Srivastav, Anand and Surolia, A and Vijayan, M (2004) Structural Basis for the Carbohydrate Specificities of Artocarpin: Variation in the Length of a Loop as a Strategy for Generating Ligand Specificity. In: Journal of Molecular Biology, 338 (4). pp. 757-770.

Jha, Anupam Nath and Ananthasuresh, GK and Vishveshwara, Saraswathi (2007) Protein sequence design based on the topology of the native state structure. In: Journal of Theoretical Biology, 248 (1). pp. 81-90.

Jha, Anupam Nath and Ananthasuresh, GK and Vishveshwara, Saraswathi (2009) A Search for Energy Minimized Sequences of Proteins. In: PLoS ONE, 4 (8).

Jha, Anupam Nath and Vishveshwara, Saraswathi (2009) Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. In: Journal of Biomolecular Structure & Dynamics, 26 (6). pp. 719-729.

Jha, Anupam Nath and Vishveshwara, Saraswathi (2006) Protein sequence design based on the topology of the native-state structure. In: InCoB 2006 (International Conference on Bioinformatics-2006) New Delhi, Dec 2006, New Delhi.

Jha, Anupam Nath and Vishveshwara, Saraswathi and Banavar, Jayanth R (2011) Amino acid interaction preferences in helical membrane proteins. In: Protein Engineering Design and Selection, 24 (8). pp. 579-588.

Jha, Anupam Nath and Vishveshwara, Saraswathi and Banavar, Jayanth R (2010) Amino acid interaction preferences in proteins. In: Protein Science, 19 (3). pp. 603-616.

Jha, BK and Mitra, N and Rana, R and Surolia, A and Salunke, DM and Datta, K (2004) pH and Cation-induced Thermodynamic Stability of Human Hyaluronan Binding Protein 1 Regulates Its Hyaluronan Affinity*. In: The Journal Of Biological Chemistry, 279 (22). pp. 23061-23072.

Jha, Niki S and Mishra, Satyendra and Jha, Shailendra K and Surolia, Avadhesha (2015) Antioxidant activity and electrochemical elucidation of the enigmatic redox behavior of curcumin and its structurally modified analogues. In: ELECTROCHIMICA ACTA, 151 . pp. 574-583.

Jha, Niki S and Mishra, Satyendra and Mamidi, Ashalatha S and Mishra, Archita and Jha, Shailendra K and Surolia, Avadhesha (2016) Targeting human telomeric G-quadruplex DNA with curcumin and its synthesized analogues under molecular crowding conditions. In: RSC ADVANCES, 6 (9). pp. 7474-7487.

Jhingran, Anupam and Padmanabhan, Prasad K and Singh, Sushma and Anamika, Krishanpal and Bakre, Abhijeet A and Bhattacharya, Sudha and Bhattacharya, Alok and Srinivasan, Narayanaswamy and Madhubala, Rentala (2008) Characterization of the Entamoeba histolytica Ornithine Decarboxylase-Like Enzyme. In: PLoS Neglected Tropical Diseases, 2 (1).

Jia, JZ and Cohen, CA and Gu, H and McLean, MR and Varadarajan, R and Bhandari, N and Peiris, M and Leung, GM and Poon, LLM and Tsang, T and Chung, AW and Cowling, BJ and Leung, NHL and Valkenburg, SA (2024) Influenza antibody breadth and effector functions are immune correlates from acquisition of pandemic infection of children. In: Nature Communications, 15 (1).

Jois, DS and Suresh, S and Vijayan, M and Easwaran, KR (1996) NMR and X-ray crystallographic studies on cyclic tetrapeptide, cyclo (D-Phe-Pro-Sar-Gly). In: International Journal of Peptide & Protein Research, 48 (1). pp. 12-20.

Jois, DS and Prasad, GS and Bednarek, M and Easwaran, KR and Vijayan, M (1993) Structure and conformation of the calcium complex of cyclo(Ala-Leu-Pro-Gly)2 in two crystal forms. In: International Journal of Peptide & Protein Research, 41 (5). pp. 484-491.

Jois, Seetharama DS and Easwaran, KRK and Bednarek, Maria and Blout, ER (1992) Conformational and Ion Binding Properties of a Cyclic Octapeptide, $cyclo(Ala-Leu-Pro-Gly)_2$. In: Biopolymers, 32 (8). pp. 993-1001.

Jones, Andrew T and Shen, Xiaoying and Walter, Korey L and LaBranche, Celia C and Wyatt, Linda S and Tomaras, Georgia D and Montefiori, David C and Moss, Bernard and Barouch, Dan H and Clements, John D and Kozlowski, Pamela A and Varadarajan, Raghavan and Amara, Rama Rao (2019) HIV-1 vaccination by needle-free oral injection induces strong mucosal immunity and protects against SHIV challenge. In: NATURE COMMUNICATIONS, 10 .

Jones, Andrew T. and Chamcha, Venkateswarlu and Kesavardhana, Sannula and Shen, Xiaoying and Beaumont, David and Das, Raksha and Wyatt, Linda S and LaBranche, Celia C and Stanfield-Oakley, Sherry and Ferrari, Guido and Montefiori, David C and Moss, Bernard and Tomaras, Georgia D and Varadarajan, Raghavan and Amaraa, Rama Rao (2018) A Trimeric HIV-1 Envelope gp120 Immunogen Induces Potent and Broad Anti-V1V2 Loop Antibodies against HIV-1 in Rabbits and Rhesus Macaques. In: JOURNAL OF VIROLOGY, 92 (5).

Jorwal, Pooja and Sikdar, Sujit Kumar (2019) Lactate reduces epileptiform activity through HCA1 and GIRK channel activation in rat subicular neurons in an in vitro model. In: EPILEPSIA .

Joseph, Agnel P and Swapna, Lakshmipuram S and Rakesh, Ramachandran and Srinivasan, Narayanaswamy (2016) Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting. In: JOURNAL OF STRUCTURAL BIOLOGY, 195 (3). pp. 294-305.

Joseph, Agnel Praveen and Bhat, Prasanna and Das, Saumitra and Srinivasan, Narayanaswamy (2014) Re-analysis of cryoEM data on HCV IRES bound to 40S subunit of human ribosome integrated with recent structural information suggests new contact regions between ribosomal proteins and HCV RNA. In: RNA BIOLOGY, 11 (7). pp. 891-905.

Joseph, Agnel Praveen and Srinivasan, N and de Brevern, Alexandre G (2011) Improvement of protein structure comparison using a structural alphabet. In: Biochimie, 93 (9). pp. 1434-1445.

Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and de Brevern, Alexandre G (2012) Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies. In: BIOCHIMIE, 94 (9). pp. 2025-2034.

Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and de Brevern, AlexandreG (2012) Cis-trans peptide variations in structurally similar proteins. In: AMINO ACIDS, 43 (3). pp. 1369-1381.

Joseph, Agnel Praveen and Valadie, Helene and Srinivasan, Narayanaswamy and de Brevern, Alexandre G. (2012) Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes. In: PLOS ONE, 7 (6).

Joseph, D and Nayak, SR and Penmatsa, A (2022) Structural insights into GABA transport inhibition using an engineered neurotransmitter transporter. In: EMBO Journal .

Joseph, Deepthi and Pidathala, Shabareesh and Mallela, Aditya Kumar and Penmatsa, Aravind (2019) Structure and Gating Dynamics of Na+/CI- Coupled Neurotransmitter Transporters. In: FRONTIERS IN MOLECULAR BIOSCIENCES, 6 .

Joshi, AC and Kaur, P and Nair, RK and Lele, DS and Nandicoori, VK and Gopal, B (2019) Selectivity among Anti-Ï� Factors by Mycobacterium tuberculosis ClpX Influences Intracellular Levels of Extracytoplasmic Function Ï� Factors. In: Journal of bacteriology, 201 (6).

Joshi, Anuja and Shukla, Jinal K and Jaiswal, Ravi K and Goutam, Kapil and Gopal, B (2013) CONFORMATIONAL FEATURES OF SIGMA FACTOR/ANTI-SIGMA COMPLEXES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 385-397.

Joshi, NV and Rao, VSR (1979) Flexibility of the pyranose ring in \alpha and \beta -glucoses. In: Biopolymers, 18 (12). pp. 2993-3004.

Joshi, NV and Rao, VSR (1982) Theoretical studies on Beta-lactam antibiotics VI: Conformational analysis and structure-activity relationships of penicillin sulfoxides and cephalosporins. In: Journal of Biosciences, 4 (2). pp. 209-218.

Joshi, NV and Virudachalam, R and Rao, VSR (1978) Theoretical Studies on Beta-Lactam Antibiotics. In: Current Science (Bangalore), 47 (24). 933-936 .

Juvvadi, Padmaja and Kalapaty, Easwaran (1998) $^7Li and ^{23}Na$ NMR studies of transmembrane cation transport mediated by ionophore lasalocid A. In: Journal of Peptide Science, 4 (1). pp. 15-20.

Juvvadi, Padmaja and Kalapat, Easwaran (1998) 7Li and 23Na NMR studies of transmembrane cation transport mediated by ionophore lasalocid A. In: Journal of Peptide Science, 4 (1). pp. 15-20.

Jyothi, G and Surolia , A and Easwaran, KRK (1994) A23187—Channel behaviour: Fluorescence study. In: Journal of Biosciences, 19 (3). pp. 277-282. (Submitted)

Jyothi, TC and Sinha, Sharmistha and Singh, Sridevi A and Surolia, A and Rao, Appu AG (2007) Napin from Brassica juncea: Thermodynamic and structural analysis of stability. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1774 (7). pp. 907-919.

K

Kabra, Dinesh and Narayan, KS (2007) Direct estimate of transport length scales in semiconducting polymers. In: Advanced Materials, 19 (11). 1465 -1470.

Kachroo, Aashiq H and Kancherla, Aswani K and Singh, Nongmaithem S and Varshney, Umesh and Mahadevan, Subramony (2007) Mutations that alter the regulation of the chb operon of Escherichia coli allow utilization of cellobiose. In: Molecular Microbiology, 66 (6). pp. 1382-1395.

Kadalayil, LP and Majumder, K and Mishra, RK and Brahmachari, SK (1988) Sequence specificity of Z-DNA formation in oligonucleotides. In: Biochemistry International, 17 (1). pp. 121-131.

Kalaivani, R and Narwani, TJ and de Brevern, AG and Srinivasan, N (2019) Long-range molecular dynamics show that inactive forms of Protein Kinase A are more dynamic than active forms. In: PROTEIN SCIENCE, 28 (3). pp. 543-560.

Kalaivani, Raju and de Brevern, Alexandre G and Srinivasan, Narayanaswamy (2016) Conservation of structural fluctuations in homologous protein kinases and its implications on functional sites. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (7). pp. 957-978.

Kaliannan, P and Vishveshwara, S and Rao, VSR (1986) Anomeric effect in carbohydrates-an ab initio study on extended model systems. In: Proceedings of Indian Academy of Sciences: Chemical Sciences, 96 (5). pp. 327-339.

Kaliannan, P and Vishveshwara, S and Rao, VSR (1985) Anomeric Effect in Phosphate Moieties of Carbohydrates: An ab initio Study. In: International Journal of Quantum Chemistry, 27 (2). 181 -194.

Kalita, Anjana and Gupta, Sakshi and Singh, Preeti and Surolia, Avadhesha and Banerjee, Kakoli (2013) IGF-1 stimulated upregulation of cyclin D1 is mediated via STAT5 signaling pathway in neuronal cells. In: IUBMB Life, 65 (5). pp. 462-471.

Kalita, P and Padhi, AK and Zhang, KYJ and Tripathi, T (2020) Corrigendum to â��Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2â�� Microbial Pathog. 145 (2020) 104236 (Microbial Pathogenesis (2020) 145, (S0882401020305234), (10.1016/j.micpath.2020.104236)). In: Microbial Pathogenesis . (In Press)

Kalita, P and Padhi, AK and Zhang, KYJ and Tripathi, T (2020) Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2. In: Microbial Pathogenesis, 145 .

Kalmankar, NV and Balaram, P and Venkatesan, R (2021) Mass Spectrometric Analysis of Cyclotides from Clitoria ternatea: Xxx-Pro Bond Fragmentation as Convenient Diagnostic of Pro Residue Positioning. In: Chemistry - An Asian Journal .

Kalmankar, NV and Gehi, BR and Sowdhamini, R (2022) Effects of a plant cyclotide on conformational dynamics and destabilization of Î²-amyloid fibrils through molecular dynamics simulations. In: Frontiers in Molecular Biosciences, 9 .

Kalmankar, NV and Pavalam, M and Indrakumar, S and Srinivasan, N and Sowdhamini, R (2022) DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. In: Database : the journal of biological databases and curation, 2022 .

Kalmankar, NV and Venkatesan, R and Balaram, P and Sowdhamini, R (2020) Transcriptomic profiling of the medicinal plant Clitoria ternatea: identification of potential genes in cyclotide biosynthesis. In: Scientific Reports, 10 (1).

Kalmankar, Neha V and Balaram, P and Ramanathan, Sowdhamini and Venkatesan, Radhika (2018) Modeling and Conformational Analysis of Cyclotides, a Class of Macrocyclic Disulfide Bonded Plant Peptides. In: BIOPHYSICAL JOURNAL, 114 (3, 1). 49A.

Kalmankar, Neha V and Ramakrishnan, C and Balaram, P (2014) Sparsely populated residue conformations in protein structures: Revisiting ``experimental'' Ramachandran maps. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 82 (7). pp. 1101-1112.

Kalyani, Josyula N and Bisht, Shveta and Lakshmikanth, Mariyanna and Murthy, Mathur RN and Savithri, Handanahal S (2013) Identification of key amino acid residues in the catalytic mechanism of diaminopropionate ammonialyase from Salmonella typhimurium. In: FEBS JOURNAL, 280 (20). pp. 5039-5051.

Kamal, Hassan and Kanhirodan, Rajan and Srinivas, Kalyan V and Sikdar, Sujit K. (2010) Analysis of connectivity map: Control to glutamate injured and phenobarbital treated neuronal network. In: Applied Physics Letters, 96 (16).

Kamwaya, ME and Oster, O and Bradaczek, H and Ponnuswamy, MN and Parthasarathy, S and Nagaraj, R and Balaram, P (1982) Structure of tert-ButyloxycarbonyI-L-alanyI-L-proline Monohydrate (t-Boc-Ala-Pro). In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 38 (1). pp. 172-176.

Kancherla, AK and Sarma, SP (2023) Solution structures and thermodynamics of cis-trans X-Pro conformers of a novel single disulfide conopeptide. In: Indian Journal of Biochemistry and Biophysics, 60 (9). pp. 710-728.

Kancherla, Aswani K and Meesala, Srinu and Jorwal, Pooja and Palanisamy, Ramasamy and Sikdar, Sujit K and Sarma, Siddhartha P (2015) A Disulfide Stabilized beta-Sandwich Defines the Structure of a New Cysteine Framework M-Superfamily Conotoxin. In: ACS CHEMICAL BIOLOGY, 10 (8). pp. 1847-1860.

Kandasamy, S and Loganathan, C and Sakayanathan, P and Karthikeyan, S and Stephen, AD and Marimuthu, DK and Ravichandran, S and Sivalingam, V and Thayumanavan, P (2021) In silico, theoretical biointerface analysis and in vitro kinetic analysis of amine compounds interaction with acetylcholinesterase and butyrylcholinesterase. In: International Journal of Biological Macromolecules, 185 . pp. 750-760.

Kandathil, Abraham Joseph and Joseph, Agnel Praveen and Kannangai, Rajesh and Srinivasan, Narayanaswamy and Abraham, Oriapadickal Cherian and Pulimood, Susanne Alexander and Sridharan, Gopalan (2009) Structural Basis of Drug Resistance by Genetic Variants of HIV Type 1 Clade C Protease from India. In: AIDS Research and Human Retroviruses, 25 (5). pp. 511-519.

Kanhere, Aditi and Bansal, Manju (2005) Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes. In: Nucleic Acids Research, 33 (10). pp. 3165-3175.

Kanhere, Aditi and Bansal, Manju (2003) An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data. In: Nucleic Acids Research, 31 (10). pp. 2647-2658.

Kanhere, Aditi and Bansal, Manju (2005) A novel method for prokaryotic promoter prediction based on DNA stability. In: BMC bioinformatics, 6 (1). pp. 1-10.

Kanjo, K and Chattopadhyay, G and Malladi, SK and Singh, RK and Jayatheertha, S and Varadarajan, R (2022) Biophysical Correlates of Enhanced Immunogenicity of a Stabilized Variant of the Receptor Binding Domain of SARS-CoV-2. In: Journal of Physical Chemistry B .

Kannan, N and Schneider, Thomas D and Vishveshwara, S (2000) Logos for amino-acid preferences in different backbone packing density regions of protein structural classes. In: Acta Crystallographica Section D, 56 (9). pp. 1156-1165.

Kannan, N and Selvaraj, S and Gromiha, Michael S and Vishveshwara, S (2001) Clusters in \alpha / \beta Barrel Proteins: Implications for Protein Structure, Function, and Folding: A Graph Theoretical Approach. In: Proteins: Structure, Function, and Genetics, 43 . pp. 103-112.

Kannan, N and Vishveshwara, S (2000) Aromatic clusters: a determinant of thermal stability of thermophilic proteins. In: Protein Engineering, 13 (11). pp. 753-761.

Kannan, N and Vishveshwara, S (1999) Identification of side-chain clusters in protein structures by a graph spectral method. In: Journal of Molecular Biology, 292 (2). pp. 441-464.

Kannan, Natarajan and Chander, Preethi and Ghosh, Pallavi and Vishveshwara, Saraswathi and Chatterji, Dipankar (2001) Stabilizing interactions in the dimer interface of \alpha-subunit in Escherichia coli RNA polymerase: A graph spectral and point mutation study. In: Protein Science, 10 (1). pp. 46-54.

Kantharaju, * and Raghothama, S and Aravinda, S and Shamala, N and Balaram, P (2010) Helical Conformations of Hexapeptides Containing N-Terminus Diproline Segments. In: Biopolymers, 94 (3). pp. 360-370.

Kantharaju, Kantharaju and Raghothama, Srinivasarao and Raghavender, Upadhyayula Surya and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2009) Conformations of Heterochiral and Homochiral Proline-Pseudoproline Segments in Peptides: Context Dependent Cis-Trans Peptide Bond Isomerization. In: Biopolymers, 92 (5). pp. 405-416.

Kanthimathi, Mookandi and Jebanesan, Daniel and Nair, Balachandran Unni and Jeyakanthan, Jeyaraman (2002) Effect of molecular association and reactivity on substitution in chromium(III)-salprn complexes. In: Transition Metal Chemistry, 27 (8). pp. 895-901.

Kapoor, Mili and Thomas, Celestine J and Bachhawat-Sikder, Kiran and Sharma, Shilpi and Surolia, Avadhesha (2003) Exploring Kinetics and Mechanism of Protein–Sugar Recognition by Surface Plasmon Resonance. [Book Chapter]

Kapoor, Mili and Dar, Jamal M and Surolia, Avadhesha and Surolia, Namita (2001) Kinetic Determinants of the Interaction of Enoyl-ACP Reductase from Plasmodium falciparum with Its Substrates and Inhibitors. In: Biochemical and Biophysical Research Communications, 289 (4). pp. 832-837.

Kapoor, Mili and Ellgaard, Lars and Gopalakrishnapai, Jayashree and Schirra, Christiane and Gemma, Emiliano and Oscarson, Stefan and Helenius, Ari and Surolia, Avadhesha (2004) Mutational Analysis Provides Molecular Insight into the Carbohydrate-Binding Region of Calreticulin: Pivotal Roles of Tyrosine-109 and Aspartate-135 in Carbohydrate Recognition. In: Biochemistry, 43 (1). pp. 97-106.

Kapoor, Mili and Gopalakrishnapai, Jayashree and Surolia, Namita and Surolia, Avadhesha (2004) Mutational analysis of the triclosan-binding region of enoyl-ACP reductase from Plasmodium falciparum. In: Biochemical Journal, 381 . pp. 735-741.

Kapoor, Mili and Honnappa, Srinivas and Eaazhisai, Kandiah and Emiliano, Gemma and Lars, Ellgaard and Oscarson, Stefan and Ari, Helenius and Surolia, Avadhesha (2003) Interactions of Substrate with Calreticulin, an Endoplasmic Reticulum Chaperone. In: Journal of Biological Chemistry, 278 (8). pp. 6194-6200.

Kapoor, Mili and Mukhi, Swarna PL and Surolia, Namita and Suguna, K and Surolia, Avadhesha (2004) Kinetic and structural analysis of the increased affinity of enoyl-ACP (acyl-carrier protein) reductase for triclosan in the presence of $NAD^{\mathrm{+}}$. In: Biochemical Journal, 381 . pp. 725-733.

Kapoor, Mili and Reddy, Chandramouli C and Krishnasastry, MV and Surolia, Namita and Surolia, Avadhesha (2004) Slow-tight binding inhibition of enoyl-acyl carrier protein reductase from Plasmodium falciparum by triclosan. In: Biochemical Journal, 381 . pp. 719-724.

Kapoor, Neha and Banerjee, Tanushree and Babu, Ponnusamy and Maity, Koustav and Surolia, Namita and Surolia, Avadhesha (2009) Design, Development, Synthesis, and Docking Analysis of 2-substituted Triclosan Analogs as Inhibitors for Plasmodium falciparum Enoyl-ACP Reductase. In: Iubmb life, 61 (11). pp. 1083-1091.

Kar, Meenakshi and Nisheetha, Amul and Kumar, Anuj and Jagtap, Suraj and Shinde, Jitendra and Singla, Mohit and Saranya, M and Pandit, Awadhesh and Chandele, Anmol and Kabra, Sushil K and Krishna, Sudhir and Roy, Rahul and Lodha, Rakesh and Pattabiraman, Chitra and Medigeshi, Guruprasad R (2019) Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi. In: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 84 (S). S25-S33.

Kar, U and Khaleeq, S and Garg, P and Bhat, M and Reddy, P and Vignesh, VS and Upadhyaya, A and Das, M and Chakshusmathi, G and Pandey, S and Dutta, S and Varadarajan, R (2022) Comparative Immunogenicity of Bacterially Expressed Soluble Trimers and Nanoparticle Displayed Influenza Hemagglutinin Stem Immunogens. In: Frontiers in Immunology, 13 .

Karanth, Megha N and Mitra, Ashima and Sarma, Siddhartha P (2009) Solution NMR studies of acetohydroxy acid synthase I: Identification of the sites of inter-subunit interactions using multidimensional NMR methods. In: International Conference on Mechanisms and Physiology of Thiamine, MAY 29-JUN 01, 2008, Wittenberg, Germany, pp. 7-13.

Karanth, Megha N and Sarma, Siddhartha P (2013) The Coil-to-Helix Transition in IlvN Regulates the Allosteric Control of Escherichia coli Acetohydroxyacid Synthase I. In: BIOCHEMISTRY, 52 (1). pp. 70-83.

Karanth, Megha N and Sarma, Siddhartha P (2010) H-1, C-13, N-15 assignments of the dimeric regulatory subunit (ilvN) of the E. coli AHAS I. In: Biomolecular NMR Assignments, 4 (2). pp. 131-133.

Karle, IL and Flippenanderson, JL and Uma, K and Balaram, P (1994) Hydration and distortion of peptide helices in crystals. α-Helical structure of a dodecapeptide, Boc-(Ala-Leu-Aib)4-OMe. In: International Journal of Peptide & Protein Research, 44 (5). pp. 491-498.

Karle, I and Gopi, HN and Balaram, P (2003) An almost ideal 19-residue alpha-helix that accommodates three D-residues in the sequence. In: Biopolymers, 71 (3). pp. 317-318.

Karle, IL and Anderson, Flippen JL and Kishore, R and Balaram, P (1989) Cystine peptides Antiparallel β-sheet conformation of the cyclic biscystine peptide [Boc-Cys-Ala-Cys-NHCH3]2. In: International Journal of Peptide & Protein Research, 34 (1). pp. 37-41.

Karle, IL and Anderson, Flippen JL and Uma, K and Balaram, P (1996) Effects of End Group and Aggregation on Helix Conformation: Crystal Structure of $Ac-(Aib-Val-Ala-Leu)_2-Aib-OMe$. In: Journal of Peptide Science, 2 (2). pp. 106-116.

Karle, IL and Awasthi, Satish Kumar and Balaram, P (1996) A designed (3-hairpin peptide in crystals. In: Proc Natl Acad Sci Unit States Am, 93 (16). pp. 8189-8193.

Karle, IL and Balaram, Padmanabhan (1990) Structural characteristics of alpha-helical peptide molecules containing Aib residues. In: Biochemistry, 29 (29). pp. 6747-6756.

Karle, IL and Flippen-Anderson, JL and Sukumar, M and Balaram, P (1990) Parallel and antiparallel aggregation of alpha-helices. Crystal structures of two apolar decapeptides X-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe (X = Boc, Ac). In: International Journal of Peptide & Protein Research, 35 (6). pp. 518-526.

Karle, IL and Flippen-Anderson, JL and Sukumar , M and Balaram, Padmanabhan (1987) Conformation of a 16-residue zervamicin IIA analog peptide containing three different structural features: 310-helix, alpha helix and ÃŸ-bend ribbon. In: Proceedings of The National Academy of Sciences of The United States of America, 84 (15). pp. 5087-5091.

Karle, IL and Flippen-Anderson, JL and Uma, K and Balaram, P (1993) Accommodation of a D-Phe Residue into a Right-Handed 310-Helix: Structure of Boc-D-Phe- ( Aib)4-Gly-L-Leu-(Aib)2-OMe, an Analogue of the Amino Terminal Segment of Antiamoebins and Emerimicins. In: Biopolymers, 33 (3). pp. 401-407.

Karle, IL and Flippen-Anderson, JL and Uma, K and Balaram, P (1993) Peptide mimics for structural features in proteins. Crystal structures of three heptapeptide helices with a C-terminal 6-->1 hydrogen bond. In: International Journal of Peptide & Protein Research, 42 (5). pp. 401-410.

Karle, IL and Flippen-Anderson, JL and Uma, K and Balaram, P (1989) Solvated Helical Backbones: X-Ray Diffraction Study of Boc-Ala-Leu-Aib-Ala-Leu-Aib-Ome.$H_2O$. In: Biopolymers, 28 (3). pp. 773-781.

Karle, IL and Flippen-Anderson, JL and Uma, K and Balaram, Padmanabhan (1988) Aggregation studies in crystals of apolar helical peptides: Boc-Aib-Val-Ala-Leu-Aib-Val-Ala-Leu-Aib-OMe. In: International Journal of Peptide & Protein Research Int J Pept Protein Res, 32 (6). pp. 536-543.

Karle, IL and Flippenanderson, JL and Uma, K and Balaram, P (1987) Apolar Helical Peptides Mimicking Amphiphilic Helices By Hydration Of Backbone - Crystal-Structure Results. In: Journal of Cellular Biochemistry, 35 (4). 371 -371.

Karle, IL and Gurunath, R and Prasad, Soumya and Rao, RB (1996) Crystal structures of a nonapeptide helix containing alpha,alpha-di-n-butylglycine (Dbg), Boc-Gly-Dbg-Ala-Val-Ala-Leu-Aib-Val-Leu-OMe. In: International Journal of Peptide & Protein Research, 47 (5). pp. 376-382.

Karle, IL and Pramanik, Animesh and Banerjee, Arindam and Bhattacharjya, Surajit and Balaram, P (1997) \omega-Amino Acids in Peptide Design. Crystal Structures and Solution Conformations of Peptide Helices Containing a \beta-Alanyl-\gamma-Aminobutyryl Segment. In: Journal of the American Chemical Society, 119 (39). pp. 9087-9095.

Karle, IL and Prasad, S and Balaram, P (2004) A combined extended and helical backbone for Boc-(Ala-Leu-Ac(7)c-)(2)-OMe. In: Journal of Peptide Research, The, 63 (2). pp. 175-180.

Karle, IL and Sukumar, M and Balaram, Padmanabhan (1986) Parallel packing of alpha-helices in crystals of the zervamicin IIA analog Boc-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe.2H2O. In: Proceedings Of The National Academy Of Sciences Of The United States Of America, 83 (24). pp. 9284-9288.

Karle, Isabella and Gopi, Hosahudya N and Balaram, Padmanabhan (2002) Infinite pleated beta-sheet formed by the beta-hairpin Boc-beta-Phe-beta-Phe-D-Pro-Gly-beta-Phe-beta-Phe-OMe. In: Proceedings of the National Academy of Sciences of the United States of America, 99 (8). pp. 5160-5164.

Karle, Isabella L and Awasthi, Satish Kumar and Balaram, Padmanabhan (1996) A designed beta-hairpin peptide in crystals. In: Proceedings of the National Academy of Sciences of the United States of America, 93 (16). pp. 8189-8193.

Karle, Isabella L and Banerjee, Arindam and Balaram, Padmanabhan (1997) Design of two-helix motifs in peptides: crystal structure of a system of linked helices of opposite chirality and a model helix-linker peptide. In: Folding and Design, 2 (4). pp. 203-210.

Karle, Isabella L and Banerjee, Arindam and Bhattacharjya, Surajit and Balaram, P (1996) Solid State and Solution Conformations of a Helical Peptide with a Central Gly-Gly Segment. In: Biopolymers, 38 (4). pp. 515-526.

Karle, Isabella L and Das, Chittaranjan and Balaram, P (2001) Effects of Hydrogen-Bond Deletion on Peptide Helices: Structural Characterization of Depsipeptides Containing Lactic Acid. In: Biopolymers, 59 (4). pp. 276-289.

Karle, Isabella L and Das, Chittaranjan and Balaram, Padmanabhan (2000) De novo protein design: Crystallographic characterization of a synthetic peptide containing independent helical and hairpin domains. In: Proceedings of the National Academy of Sciences of the United States of America, 97 (7). pp. 3034-3037.

Karle, Isabella L and Flippen-Anderson, JL and Uma, K and Balaram, Padmanabhan (1988) Aqueous channels within apolar peptide aggregates. Solvated helix of Boc-Aib-Ala-Leu-Aib-Ala-Leu-Aib- -Ala-Leu-Aib-OMe. H2O.CH3OH. In: Proceedings Of The National Academy of Sciences of The United States Of America , 85 (2). pp. 299-303.

Karle, Isabella L and Flippen-Anderson, JL and Uma, K and Balaram, Padmanabhan (1990) Helix construction using a-aminoisobutyryl residues in a modular approach to synthetic protein design. Conformational properties of an apolar decapeptide in two different crystal forms and in solution. In: Current Science (Bangalore), 59 (17). 875-885 .

Karle, Isabella L and Flippen-Anderson, Judith and Sukumar, Muppalla and Balaram, Padmanabhan (1987) Conformation of a 16-residue zervamicin IIA analog peptide containing three different structural features: $3_{10}$-helix, \alpha-helix, and \beta-bend ribbon. In: Proceedings of the National Academy of Sciences of the United States of America, 84 (15). pp. 5087-5091.

Karle, Isabella L and Flippen-Anderson, Judith and Uma, Kuchibhotla and Balaram, Padmanabhan (1988) Aqueous channels within apolar peptide aggregates: Solvated helix of the \alpha-aminoisobutyric acid (Aib)-containing peptide $Boc-{(Aib-Ala-Leu)}_3-Aib-OMe. {2H}_2O.{CH}_3OH$ in crystals. In: Proceedings of the National Academy of Sciences of the United States of America, 85 (2). pp. 299-303.

Karle, Isabella L and Flippen-Anderson, Judith L and Agarwalla, S and Balaram, P (1994) Conformation of the flexible bent helix of Leu1-zervamicin in crystal C and a possible gating action for ion passage. In: Biopolymers, 34 (6). pp. 721-735.

Karle, Isabella L and Flippen-Anderson, Judith L and Agarwalla, Sanjay and Balaram, Padmanabhan (1991) Crystal structure of [Leu1]zervamicin, a membran ion-channel peptide: Implications for gating mechanisms. In: Proceedings of the National Academy of Sciences of the United States of America, 88 (12). pp. 5307-5311.

Karle, Isabella L and Flippen-Anderson, Judith L and Gurunath, R and Balaram, P (1994) Facile transition between 310- and alpha-helix: Structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib- fragment. In: Protein Science, 3 (9). pp. 1547-1555.

Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, M and Balaram, P (1992) Helix Packing of Leucine-Rich Peptides: A Parallel Leucine Ladder in the Structure of Boc- Aib-Leu- Aib- Aib-Leu-Leu-Leu- Aib-Leu- Aib-OMe. In: Proteins: Structure, Function, and Genetics, 12 (4). pp. 324-330.

Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, Mupalla and Balaram, Padmanabhan (1988) Monoclinic polymorph of Boc-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe(anhydrous). Parallel packing of 3(10)-/alpha-helices and a transition of helix type. In: International Journal of Peptide & Protein Research, 31 (6). pp. 567-576.

Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, Muppalla and Balaram, Padmanabhan (1992) Differences in hydration and association of helical Boc-Val-Ala-Leu-Aib-Val-Ala-Leu-(Val-Ala-Leu-Aib)2-OMe. xH2O in two crystalline polymorphs. In: Journal of Medical Chemistry, 35 (21). pp. 3885-3889.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, Hemalatha and Balaram, P (1990) Peptide Design: Influence of a Guest Aib-Pro Segment on the Stereochemistry of an Oligo-Val Sequence-Solution Conformations and Crystal Structure of Boc-(Val)2-Aib-Pro-(Val)3-OMe. In: Biopolymers, 29 (10-11). pp. 1433-1442.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Apolar Peptide Models for Conformational Heterogeneity, Hydration, and Packing of Polypeptide Helices: Crystal Structure of Hepta- and Octapeptides Containing \alpha-Aminoisobutyric Acid. In: Proteins: Structure, Function, and Genetics, 7 (1). pp. 62-73.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Helix Aggregation in Peptide Crystals: Occurrence of Either All Parallel or Antiparallel Packing Motifs for \alpha-Helices in Polymorphs of Boc-Aib-Ala-leu-Ala-leu-Aib-leu-Ala-leu-Aib-OMe. In: Biopolymers, 29 (14). pp. 1835-1845.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1989) Modular Design of Synthetic Protein Mimics. Characterization of the Helical Conformation of a 13-Residue Peptide in Crystals. In: Biochemistry, 28 (16). pp. 6696-6701.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Synthetic Peptide Helices in Crystals: Structure and Antiparallel and Skewed Packing Motifs for \alpha-Helices in Two Isomeric Decapeptides. In: Biopolymers, 30 (7-8). pp. 719-731.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1993) Unfolding of an alpha-Helix in Peptide Crystals by Solvation: Conformational Fragility in a Heptapeptide. In: Biopolymers, 33 (5). pp. 827-837.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, Kuchibhotla and Balaram, Hemalatha and Balaram, Padmanabhan (1989) \alpha -Helix and Mixed $3_{10}$/ \alpha -helix in Cocrystallized Conformers of Boc-Aib-Val-Aib-Aib-Val-Val-Val-Aib-Val-Aib-Ome. In: Proceedings of the National Academy of Sciences of the United States of America, 86 (3). pp. 765-769.

Karle, Isabella L and Flippen-Anderson, Judith L and Uma, Kuchibhotla and Balaram, Padmanabhan (1990) Parallel zippers formed by \alpha-helical peptide columns in crystals of Boc-Aib-Glu(OBzl)-Leu-Aib-Ala-Leu-Aib-Ala-Lys(Z)-Aib-OMe. In: Proceedings of the National Academy of Sciences of the United States of America, 87 (20). pp. 7921-7925.

Karle, Isabella L and Gopi, Hosahudya N and Balaram, Padmanabhan (2003) Crystal structure of a hydrophobic 19-residue peptide helix containing three centrally located D amino acids. In: Proceedings of the National Academy of Sciences of the United States of America, 100 (24). pp. 13946-13951.

Karle, Isabella L and Gopi, Hosahudya N and Balaram, Padmanabhan (2001) Peptide hybrids containing alpha- and beta-amino acids: Structure of a decapeptide beta-hairpin with two facing beta-phenylalanine residues. In: Proceedings of the National Academy of Sciences of the United States of America, 98 (7). pp. 3716-3719.

Karle, Isabella L and Gurunath, R and Prasad, Sudhanand and Kaul, Ramesh and Rao, Balaji R and Balaram, P (1995) Peptide Design. Structural Evaluation of Potential Nonhelical Segments Attached to Helical Modules. In: Journal of the American Chemical Society, 117 (38). pp. 9632-9637.

Karle, Isabella L and Perozzo, Mary Ann and Mishra, Vinod K and Balaram, Padmanabhan (1998) Crystal structure of the channel-forming polypeptide antiamoebin in a membrane-mimetic environment. In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), 95 (10). pp. 5501-5504.

Karle, Isabella L and Ramesh, Kaul and Balaji, Rao R and Raghothama, Srinivasarao and Balaram, P (1997) Stereochemical Analysis of Higher α,α-Dialkylglycine Containing Peptides. Characterization of Local Helical Conformations at Dipropylglycine Residues and Observation of a Novel Hydrated Multiple β-Turn Structure in Crystals of a Glycine Rich Peptide. In: Journal of American Chemical Society, 119 (50). pp. 12048-12054.

Karle, Isabella L and Rao, Balaji R and Kaul, Ramesh and Prasad, Sudhanand and Balaram, P (1996) Peptide Design: Crystal Structure of a Helical Peptide Module Attached to a Potentially Nonhelical Amino Terminal Segment. In: Biopolymers, 39 (1). pp. 75-83.

Karle, Isabella L and Rao, Balaji R and Prasad, Sudhanand and Kaul, Ramesh and Balaram, P (1994) Nonstandard Amino Acids in Conformational Design of Peptides. Helical Structures in Crystals of 5-10 Residue Peptides Containing Dipropylglycine and Dibutylglycine. In: Journal of the American Chemical Society, 116 (23). pp. 10355-10361.

Karle, Isabella L and Sukumar, Muppalla and Balaram, Padmanabhan (1986) Parallel packing of \alpha-helices in crystals of the zervamicin IIA analog Boc-Trp-Ile-Ala-Aib-Ile-Val-Aib-Leu-Aib-Pro-OMe ${2H}_2O$. In: Proceedings of the National Academy of Sciences of the United States of America, 83 (24). pp. 9284-9288.

Karnawat, Vishakha and Gogia, Spriha and Balaram, Hemalatha and Puranik, Mrinalini (2015) Deciphering Differential Distortion of Purine Substrates by Human and Plasmodium falciparum HGPRT. In: FASEB JOURNAL, 29 (1).

Karthik, Ramachandran and Manigandan, Venkatesan and Saravanan, Ramachandran and Rajesh, Rajaian Pushpabai and Chandrika, Baby (2016) Structural characterization and in vitro biomedical activities of sulfated chitosan from Sepia pharaonis. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 84 . pp. 319-328.

Karthik, Ramachandran and Manigandan, Venkatesan and Sheeba, Ravi and Saravanan, Ramachandran and Rajesh, Pushpabai Rajaian (2016) Structural characterization and comparative biomedical properties of phloroglucinol from Indian brown seaweeds. In: JOURNAL OF APPLIED PHYCOLOGY, 28 (6). pp. 3561-3573.

Karthik, S and Mandal, PK and Thirugnanasambandam, A and Gautham, N (2019) Crystal structures of disordered Z-type helices. In: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 38 (4). pp. 279-293.

Kasthurirengan, S and Soundararajan, S (1975) Electron paramagnetic resonance study of vanadyl ion in K2Zn(SO4)2·6H2O and K2Mg(SO4)2·6H2O. In: Journal of Magnetic Resonance, 19 (3). pp. 357-364.

Katiyar, Samiksha and Singh, Amrita and Surolia, Avadhesha (2014) The interaction of N-trifluoroacetylgalactosamine and its derivatives with winged bean (Psophocarpus tetragonolobus) basic agglutinin reveals differential mechanism of their recognition: a fluorine-19 nuclear magnetic resonance study. In: GLYCOCONJUGATE JOURNAL, 31 (6-7). pp. 537-543.

Katiyar, Samiksha and Van Damme, EJM and Peumans, Willy J and Surolia, Avadhesha (1999) Thermodynamic Analysis of Chitooligosaccharide Binding to Urtica dioica agglutinin by Isothermal Titration Calorimetry. In: Bioscience Reports, 19 (5). pp. 411-419.

Katyare, N and Sikdar, SK (2020) Theta resonance and synaptic modulation scale activity patterns in the medial entorhinal cortex stellate cells. In: Annals of the New York Academy of Sciences, 1478 (1). pp. 92-112.

Kaul, R and Balaram, P and Banumathi, S and Velmurugan, D and Ravikumar, K and Rao, Balaji R (2000) Context-dependent conformation of diethylglycine residues in peptides. In: Journal of Peptide Research, 55 (4). pp. 271-278.

Kaul, Ramesh and Balaram, P (1999) Stereochemical Control of Peptide Folding. In: Bioorganic & Medicinal Chemistry, 7 (1). pp. 105-117.

Kaul, Ramesh and Banumathi, S and Velmurugan, D and Rao, Balaji R and Balaram, P (2000) Conformational Choice at alpha,alpha-Di-n-Propylglycine Residues: Helical or Fully Extended Structures? In: Biopolymers, 54 (3). pp. 159-167.

Kaur, Paramjeet and Uma, K and Balaram, P and Chauhan, VS (1989) Synthetic and conformational studies on dehydrophenylalanine containing model peptides. In: International Journal of Peptide & Protein Research, 33 (2). 103 -109 .

Kaushal, Prem S and Talawar, Ramappa K and Krishna, PDV and Varshney, Umesh and Vijayan, M (2008) Unique features of the structure and interactions of mycobacterial uracil-DNA glycosylase: structure of a complex of the Mycobacterium tuberculosis enzyme in comparison with those from other sources. In: Acta Crystallographica Section D: Biological Crystallography, 41 (4). pp. 551-560.

Kaushal, Prem Singh and Sankaranarayanan, R and Vijayan, M (2008) Water-mediated variability in the structure of relaxed-state haemoglobin. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 64 (6). pp. 463-469.

Kaushal, Prem Singh and Singh, Pawan and Sharma, Alok and Muniyappa, K. and Vijayan, M. (2010) X-ray and molecular-dynamics studies on Mycobacterium leprae single-stranded DNA-binding protein and comparison with other eubacterial SSB structures. In: Acta Crystallographica Section D, 66 (Part 1). pp. 1048-1058.

Kaushal, Prem Singh and Talawar, Ramappa K and Varshney, Umesh and Vijayan, M (2010) Structure of uracil-DNA glycosylase from Mycobacterium tuberculosis: insights into interactions with ligands. In: Acta Crystallographica Section F, 66 (Part 8). pp. 887-892.

Kaushik, Swati and Mutt, Eshita and Chellappan, Ajithavalli and Sankaran, Sandhya and Srinivasan, Narayanaswamy and Sowdhamini, Ramanathan (2013) Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage. In: PLOS ONE, 8 (2).

Keasar, C and McGuffin, LJ and Wallner, B and Chopra, G and Adhikari, B and Bhattacharya, D and Blake, L and Bortot, LO and Cao, R and Dhanasekaran, BK and Dimas, I and Faccioli, RA and Faraggi, E and Ganzynkowicz, R and Ghosh, S and Ghosh, S and GieÅdoÅ, A and Golon, L and He, Y and Heo, L and Hou, J and Khan, M and Khatib, F and Khoury, GA and Kieslich, C and Kim, DE and Krupa, P and Lee, GR and Li, H and Li, J and Lipska, A and Liwo, A and Maghrabi, AHA and Mirdita, M and Mirzaei, S and Mozolewska, MA and Onel, M and Ovchinnikov, S and Shah, A and Shah, U and Sidi, T and Sieradzan, AK and Å�lusarz, M and Å�lusarz, R and Smadbeck, J and Tamamis, P and Trieber, N and Wirecki, T and Yin, Y and Zhang, Y and Bacardit, J and Baranowski, M and Chapman, N and Cooper, S and Defelicibus, A and Flatten, J and Koepnick, B and PopoviÄ�, Z and Zaborowski, B and Baker, D and Cheng, J and Czaplewski, C and Delbem, ACB and Floudas, C and Kloczkowski, A and OÅ�dziej, S and Levitt, M and Scheraga, H and Seok, C and SÃ¶ding, J and Vishveshwara, S and Xu, D and Caglar, A and Coral, A and MacMillan, A and Lubow, A and Failer, B and Kestemont, B and Landers, CR and Painter, CR and Garnier, C and Sellin, C and Janz, D and Wheeler, DC and Simon, V and Flear, DM and Croze, E and McIlvaine, GV and Beecher, G and Lawrie, G and Ykman, G and Feldmann, H and Fuentes, HK and Terumasa, H and Kovanecz, I and Longino, III and Nijland, JH and Diderich, JA and Canfield, JM and Eriksson, J and Slone, JD and Appel, JG and Mitchell, J and Mitch, J and Loots-Boiy, J and Brownlee, JM and Wilson, K and Clayton, KT and Deford, KE and Abbey, KJ and Withers, L and Wei, L and Ives, L and Miller, LA and Carpenter, L and Sharma, MG and Ricci, M and Binfield, MS and Davids, MJ and Gaebel, M and Cassidy, MD and Fagiola, M and PfÃ¼tzenreuter, M and Barlow, N and Triggiani, IV and Innes, RBM and Leduc, R and Dos Santos Gomes, RLC and Morneau, RLR and Zaccanelli, SJ and Kleinfelter, SC and Van Der Laan, TJA and Bausewein, T and George, TJ and Mikhail, V and Barmettler, W and Crivelli, SN (2018) An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. In: Scientific Reports, 8 (1).

Kerry, RG and Mahapatra, GP and Maurya, GK and Patra, S and Mahari, S and Das, G and Patra, JK and Sahoo, S (2021) Molecular prospect of type-2 diabetes: Nanotechnology based diagnostics and therapeutic intervention. In: Reviews in Endocrine and Metabolic Disorders, 22 (2). pp. 421-451.

Kesavardhana, Sannula and Das, Raksha and Citron, Michael and Datta, Rohini and Ecto, Linda and Srilatha, Nonavinakere Seetharam and DiStefano, Daniel and Swoyer, Ryan and Joyce, Joseph G and Dutta, Somnath and LaBranche, Celia C and Montefiori, David C and Flynn, Jessica A and Varadarajan, Raghavan (2017) Structure-based Design of Cyclically Permuted HIV-1 gp120 Trimers That Elicit Neutralizing Antibodies. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 292 (1). 278+.

Kesavardhana, Sannula and Varadarajan, Raghavan (2014) Stabilizing the Native Trimer of HIV-1 Env by Destabilizing the Heterodimeric Interface of the gp41 Postfusion Six-Helix Bundle. In: JOURNAL OF VIROLOGY, 88 (17). pp. 9590-9604.

Kesavulu, MM and Gowda, Prakasha AS and Ramya, TNC and Surolia, N and Suguna, K (2005) Plasmepsin inhibitors: design, synthesis, inhibitory studies and crystal structure analysis. In: Journal of Peptide Research, 66 (4). pp. 211-219.

Kesavulu, Muppuru Muni and Ramasubramanian, Sundaramoorthy and Suguna, Kaza (2005) Effect of dimethyl sulphoxide on the crystal structure of porcine pepsin. In: Biochemical and Biophysical Research Communications, 331 (4). pp. 1510-1514.

Kesharwani, S and Raj, P and Paul, A and Roy, K and Bhanot, A and Mehta, A and Gopal, A and Varshney, U and Gopal, B and Sundriyal, S (2023) Crystal structures of non-uracil ring fragments in complex with Mycobacterium tuberculosis uracil DNA glycosylase (MtUng) as a starting point for novel inhibitor design: A case study with the barbituric acid fragment. In: European Journal of Medicinal Chemistry, 258 .

Ketkar, AD and Shenoy, AR and Ramagopal, UA and Visweswariah, Sandhya S and Suguna, K (2006) A structural basis for the role of nucleotide specifying residues in regulating the Rv1625c adenylyl cyclase oligomerization of the from M-tuberculosis. In: Journal of Molecular Biology , 356 (4). pp. 904-916.

Ketkar, Amit D and Shenoy, Avinash R and Kesavulu, Muppuru M and Visweswariah, Sandhya S and Suguna, Kaza (2004) Purification, crystallization and preliminary X-ray diffraction analysis of the catalytic domain of adenylyl cyclase Rv1625c from Mycobacterium tuberculosis. In: Acta Crystallographica Section D: Biological Crystallography, 60 (Part 2). pp. 371-373.

Ketkar, Amit D and Shenoy, Avinash R and Ramagopal, Udupi A and Visweswariah, Sandhya S and Suguna, Kaza (2006) A Structural Basis for the Role of Nucleotide Specifying Residues in Regulating the Oligomerization of the Rv1625c Adenylyl Cyclase from M. tuberculosis. In: Journal of Molecular Biology, 356 (4). pp. 904-916.

Khan, D and Ara, T and Ravi, V and Rajagopal, R and Tandon, H and Parvathy, J and Gonzalez, EA and Asirvatham-Jeyaraj, N and Krishna, S and Mishra, S and Raghu, S and Bhati, AS and Tamta, AK and Dasgupta, S and Kolthur-Seetharam, U and Etchegaray, J-P and Mostoslavsky, R and Rao, PSM and Srinivasan, N and Sundaresan, NR (2021) SIRT6 transcriptionally regulates fatty acid transport by suppressing PPARÎ³. In: Cell Reports, 35 (9).

Khan, F and Kaza, S (2022) Crystal structure of an L-type lectin domain from archaea. In: Proteins: Structure, Function and Bioinformatics .

Khan, F and Suguna, K (2019) Crystal structure of the legume lectin-like domain of an ERGIC-53-like protein from Entamoeba histolytica. In: Acta Crystallographica Section F: Structural Biology Communications, 75 . pp. 197-204.

Khan, Lubina and Kumar, Rajesh and Thiruvengadam, Ramachandran and Parray, Hilal Ahmad and Makhdoomi, Muzamil Ashraf and Kumar, Sanjeev and Aggarwal, Heena and Mohata, Madhav and Hussain, Abdul Wahid and Das, Raksha and Varadarajan, Raghavan and Bhattacharya, Jayanta and Vajpayee, Madhu and Murugavel, K G and Solomon, Suniti and Sinha, Subrata and Luthra, Kalpana (2017) Cross-neutralizing anti-HIV-1 human single chain variable fragments(scFvs) against CD4 binding site and N332 glycan identified from a recombinant phage library. In: SCIENTIFIC REPORTS, 7 .

Khan, M Islam and Surolia, N and Mathew, MK and Balaram, Padmanabhan and Surolia, Avadhesha (1981) Fluorescence polarization as a tool to study lectin-sugar interaction. An investigation of the binding of 4-methylumbelliferyl beta-D-galactopyranoside to Abrus precatorious agglutinin. In: European Journal of Biochemistry, 115 (1). pp. 149-152.

Khan, MI and Mathew, MK and Balaram, P and Surolia, A (1980) Fluorescence-polarization studies on binding of 4-methylumbelliferyl beta-D-galactopyranoside to Ricinus communis (castor-bean) agglutinin. In: Biochemical Journal, 191 (2). pp. 395-400.

Khan, MI and Sastry, MV and Surolia, Avadhesha (1986) Thermodynamic and kinetic analysis of carbohydrate binding to the basic lectin from winged bean (Psophocarpus tetragonolobus). In: Journal of Biological Chemistry, 261 (7). pp. 3013-3019.

Khan, MI and Surolia, A (1982) Chemical Modification Studies On Ricinus-Communis (Castor Bean) Agglutinin. In: European Journal of Biochemistry, 126 (3). pp. 465-500.

Khan, MI and Swamy, Joginadha M and Sastry, Krishna MV and Sajjan, Umadevi S and Patanjali, SR and Rao, Prasad and Swarnalatha, GV and Banerjee, P and Surolia, A (1988) Saccharide binding to three Gal/GalNAc specific lectins: Fluorescence, spectroscopic and stopped-flow kinetic studies. In: Glycoconjugate Journal, 5 (1). pp. 75-84.

Khanday, Imtiyaz and Das, Sanjukta and Chongloi, Grace L and Bansal, Manju and Grossniklaus, Ueli and Vijayraghavan, Usha (2016) Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. In: PLANT PHYSIOLOGY, 172 (1). pp. 372-388.

Khare, Shruti and Bhasin, Munmun and Sahoo, Anusmita and Varadarajan, Raghavan (2019) Protein model discrimination attempts using mutational sensitivity, predicted secondary structure, and model quality information. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 87 (4). pp. 326-336.

Khatri, B and Bhat, P and Chatterjee, J (2020) Convenient synthesis of thioamidated peptides and proteins. In: Journal of Peptide Science, 26 (4-5).

Khatri, B and Majumder, P and Nagesh, J and Penmatsa, A and Chatterjee, J (2020) Increasing protein stability by engineering the n â�� Ï�* interaction at the Î²-turn. In: Chemical Science, 11 (35). pp. 9480-9487.

Khatri, B and Nuthakki, VR and Chatterjee, J (2019) Strategies to Enhance Metabolic Stabilities. [Book Chapter]

Khatri, B and Raghunathan, S and Chakraborti, S and Rahisuddin, R and Kumaran, S and Tadala, R and Wagh, P and Priyakumar, UD and Chatterjee, J (2021) Desolvation of Peptide Bond by O to S Substitution Impacts Protein Stability. In: Angewandte Chemie - International Edition .

Khoo, Keith K and Gupta, Kallol and Green, Brad R and Zhang, Min-Mm and Watkins, Maren and Olivera, Baldomero M and Balaram, Padmanabhan and Yoshikami, Doju and Bulaj, Grzegorz and Norton, Raymond S (2012) Distinct Disulfide Isomers of mu-Conotoxins KIIIA and KIIIB Block Voltage-Gated Sodium Channels. In: BIOCHEMISTRY, 51 (49). pp. 9826-9835.

Khurana, H and Baratam, K and Bhattacharyya, S and Srivastava, A and Pucadyil, TJ (2023) Mechanistic analysis of a novel membrane-interacting variable loop in the pleckstrin-homology domain critical for dynamin function. In: Proceedings of the National Academy of Sciences of the United States of America, 120 (11). e2215250120.

Kidwai, Saqib and Bouzeyen, Rania and Chakraborti, Sohini and Khare, Neha and Das, Sumana and Gosain, Tannu Priya and Behura, Assirbad and Meena, Chhuttan Lal and Dhiman, Rohan and Essafi, Makram and Bajaj, Avinash and Saini, Deepak Kumar and Srinivasan, Narayanaswamy and Mahajan, Dinesh and Singh, Ramandeep (2019) NU-6027 Inhibits Growth of Mycobacterium tuberculosis by Targeting Protein Kinase D and Protein Kinase G. In: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 63 (9).

Kiran, MR and Mohanty, D and Bansal, M (1997) Computer modelling studies on G-rich triplex and quadruplex DNA structures. In: Abstracts Of Papers Of The American Chemical Society, 213 (Part 1). 256-COMP. (Unpublished)

Kiran, MR and Bansal, M (1995) Molecular Mechanics Studies of Homopolymeric and Mixed Sequence Py.Pu*Pu Triple Helices,. In: Indian Journal of Biochemistry & Biophysics, 32 (6). 391-403 .

Kiran, MR and Bansal, M (1997) Sequence Independent Recombination Triple Helices: A Molecular Dynamics Study. In: Journal of Biomolecular Structure & Dynamics, 15 (2). pp. 333-345.

Kiran, MR and Bansal , M (1995) Structural Polymorphism in d(T).d(A)*d(T) Triple Helices. In: Journal of Biomolecular Structure & Dynamics, 13 (3). 493-505 .

Kirkeby, S and Singha, Netai C and Surolia, Avadhesha (1997) Localized agglutinin staining in muscle capillaries from normal and very old atrophic human muscle using winged bean ( Psophocarpus tetragonolobus ) lectin. In: Histochemistry, 107 (1). pp. 31-37.

Kirthi, N and Maiya, SP and Murthy, MRN and Savithri, HS (2002) Evidence for recombination among the tomato leaf curl virus strains/species from Bangalore, India. In: Archives of Virology, 147 (2). pp. 255-272.

Kishan, Radha KV and Chandra, Nagasuma R and Sudarsanakumar, C and Suguna, K and Vijayan, M (1995) Water-Dependent Domain Motion and Flexibility in Ribonuclease A and the Invariant Features in its Hydration Shell. An X-ray Study of Two Low-Humidity Crystal Forms of the Enzyme. In: Acta Crystallographica Section D, 51 . pp. 703-710.

Kishore, R and Balaram, P (1984) Synthesis and conformations of stereochemically restricted analogs of $Leu_5-enkephalinamide$: substitution of a -aminoisobutyric acid and 1-aminocyclopentane-1-carboxylic acid at positions 2 and 3. In: Indian Journal of Chemistry, Sect. B: Organic Chemistry including Medicinal Chemistry, 23 (12). pp. 1137-1144.

Kishore, Raghuvansh and Balaram, Padmanabhan (1986) Stereochemically Constrained Enkephalin Analogs Containing $\alpha$-Aminoisobutyric Acid and 1-Amino-Cyclopentane-l-Carbolylic Acid. In: NIDA Research Monograph, 69 . pp. 312-331.

Kishore, A Hari and Vedamurthy, BM and Mantelingu, K and Agrawal, Shipra and Reddy, BA Ashok and Roy, Siddhartha and Rangappa, KS and Kundu, Tapas K (2008) Specific Small-Molecule Activator of Aurora Kinase A Induces Autophosphorylation in a Cell-Free System. In: Journal of Medicinal Chemistry, 51 (4). 792-797.

Kishore, R and Balaram, P (1984) Cyclic biscystine peptides. Models for antiparallel -sheet conformations. In: Journal of the Chemical Society, Chemical Communications (12). pp. 778-779.

Kishore, R and Balaram, P (1985) Stabilization of \gamma-Turn Conformations in Peptides by Disulfide Bridging. In: Biopolymers, 24 (11). pp. 2041-2043.

Kishore, R and Balaram, Padmanabhan (1984) Synthesis and conformations of stereochemically restricted analogs of Leu5-enkephalinamide. Substitution of a-aminoisobutyric acid and 1-aminocyclopentane-1-carboxylic acid at positions 2 and 3. In: Indian Journal of Chemistry, 23B . pp. 1137-1144.

Kishore, R and Ishizaki, H and Tu, AT and Ravi , A and Balaram, Padmanabhan (1987) Cystine peptides. Disulfide conformations in fourteen membered loops investigated by Raman spectroscopy and circular dichroism. In: International Journal of Peptide and Protein Research, 30 (4). pp. 474-480.

Kishore, R and Kumar, A and Balaram, P (1985) Cystine Peptides. The Antiparallel \beta -Sheet Conformation of Two Synthetic Cyclic Bis( cystine peptides). In: Journal of the American Chemical Society, 107 (26). pp. 8019-23.

Kishore, R and Mathew, MK and Balaram, P (1983) A fluorescent peptide model for the thioredoxin active site. In: FEBS Letters, 159 (1-2). pp. 221-224.

Kishore, R and Raghothama, S and Balaram, P (1987) Cystine peptides. Spectroscopic studies on the conformations of a cyclic pentapeptide disulfide. In: International Journal of Peptide & Protein Research, 29 (3). pp. 381-391.

Kishore, R and Raghothama, S and Balaram, P (1987) Cystine peptides: The intramolecular antiparallel \beta sheet conformation of a 20-membered cyclic peptide disulfide. In: Biopolymers, 26 (6). pp. 873-891.

Kishore, R and Raghothama, S and Balaram, P (1988) Synthetic peptide models for the redox-active disulfide loop of glutaredoxin. Conformational studies. In: Biochemistry, 27 (7). pp. 2462-2471.

Kodandapani, KL and Setlur, RV (1978) A Cellular Array for Multivalued Logic Functions. In: IEEE Transactions on Computers, 27 (11). pp. 1055-1059.

Kodandapani, Ramadurgam and Suresh, Cheravakkattumadhom G and Vijayan, Mamannamana (1990) Crystal structure of low humidity tetragonal lysozyme at 2.1-A resolution. Variability in hydration shell and its structural consequences. In: Journal of Biological Chemistry, 265 (27). pp. 16126-16131.

Koehl, A and Hu, H and Feng, D and Sun, B and Zhang, Y and Robertson, MJ and Chu, M and Kobilka, TS and Laeremans, T and Steyaert, J and Tarrasch, J and Dutta, S and Fonseca, R and Weis, WI and Mathiesen, JM and Skiniotis, G and Kobilka, BK (2019) Erratum: Author Correction: Structural insights into the activation of metabotropic glutamate receptors (Nature (2019) 566 7742 (79-84)). In: Nature, 567 (7747). E10.

Koehl, Antoine and Hu, Hongli and Feng, Dan and Sun, Bingfa and Zhang, Yan and Robertson, Michael J and Chu, Matthew and Kobilka, Tong Sun and Laermans, Toon and Steyaert, Jan and Tarrasch, Jeffrey and Dutta, Somnath and Fonseca, Rasmus and Weis, William I and Mathiesen, Jesper M and Skiniotis, Georgios and Kobilka, Brian K (2019) Structural insights into the activation of metabotropic glutamate receptors. In: NATURE, 566 (7742). 79+.

Koh, Sung K and Ananthasuresh, GK and Vishveshwara , S (2005) A Deterministic Optimization Approach to Protein Sequence Design Using Continuous Models. In: The International Journal of Robotics , 24 (2-3). pp. 109-130.

Kolaskar, AS and Ramabrahmam, V and Soman, KV (1980) Reversals of polypeptide chain in globular proteins. In: International Journal of Peptide and Protein Research, 16 (1). pp. 1-11.

Kolaskar, AS and Lakshminarayanan, AV and Sarathy, KP and Sasisekharan, V (1975) The nonplanar peptide unit III. Quantum chemical calculations for related compounds and experimental X-ray diffraction data. In: Biopolymers, 14 (5). pp. 1081-1094.

Kolaskar, AS and Prashanth, D (1979) Empirical torsional potential functions from protiesn structure DATA Phi- and Psi-Potentials for Non-glycyl Amino Acid Residues. In: International Journal of Peptide & Protein Research, 14 (2). pp. 88-98.

Kolaskar, AS and Soman, KV (1979) Common factor in invivo synthesized polypeptides. In: Current Science (Bangalore), 48 (21). pp. 928-931.

Kolaskar , AS and Prashanth , D (1979) Empirical torsional potential functions from protein structure data. Phi- and psi-potentials for non-glycyl amino acid residues. In: International Journal of Peptide & Protein Research, 14 (2). pp. 88-98.

Konnert, J and Karle, J and Karle, IL and Uma, K and Balaram, P (1999) Isomorphous replacement combined with anomalous dispersion in the linear equations: application to a crystal containing four nonapeptide conformers. In: Acta Crystallographica Section D: Biological Crystallography, 55 (2). pp. 448-457.

Kotyada, Chaithanya and Maulik, Aditi and Srivastava, Anand and Singh, Mahavir (2017) Mechanistic insights into the differential catalysis by RheB and its mutants: Y35A and Y35A-D65A. In: ACS Omega, 2 (10). pp. 6691-6702. ISSN 2470-1343

Krishna, A and Mittal, D and Virupaksha, SG and Nair, AR and Narayanan, R and Thakur, CS (2021) Biomimetic FPGA-based spatial navigation model with grid cells and place cells. In: Neural Networks, 139 . pp. 45-63.

Krishna, K and Sukumar, M and Balaram, P (1990) Structural chemistry and membrane modifying activity of the fungal polypeptides zervamicins, antiamoebins and efrapeptins. In: Pure and Applied Chemistry, 62 (7). pp. 1417-1420.

Krishna, R and Manjunath, GP and Kumar, P and Surolia, A and Nagasuma, Chandra R and Muniyappa, K and Vijayan, M (2006) Crystallographic identification of an ordered C-terminal domain and a second nucleotide-binding site in RecA: new insights into allostery. In: Nucleic Acids Research, 34 (9). 2186-2195.

Krishna, R and Prabu, Rajan J and Manjunath, GP and Datta, S and Chandra, NR and Muniyappa, K and Vijayan, M (2007) Snapshots of RecA Protein Involving Movement of the C-domain and Different Conformations of the DNA-binding Loops: Crystallographic and Comparative Analysis of 11 Structures of Mycobacterium smegmatis RecA. In: Journal of Molecular Biology, 367 (4). pp. 1130-1144.

Krishna, Yedhu and Sheehe, Suzanne L and O'Byrne, Sean (2018) Detection of Spatial Variation in Hypersonic Nozzle Flow Using Diode Laser Spectroscopy. In: AIAA JOURNAL, 56 (7). pp. 2930-2935.

Krishna Murthy, HM and Vijayan, M (1981) Structural Studies of Analgesics and Their Interactions. VIII.* Rotational Isomerism and Disorder in the Crystal Structure of Meelofenamie Acid. In: Acta Crystallographica Section B-Structural Science, 37 (May). pp. 1102-1105.

Krishna Murthy, HM and Vijayan, M (1981) Structural studies of analgesics and their interactions. VII. Stereoisomerism and disorder in the structure of oxyphenbutazone monohydrate. In: Acta Crystallographica Section B-Structural Science, 37 (Jan). pp. 210-213.

Krishna Sastry, MV and Swamy, Musti Joginadha and Surolia, Avadhesha (1988) Analysis of dynamics and mechanism of ligand binding to Artocarpus integrifolia agglutinin. A 13C and 19F NMR study. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 263 (29). 14826 -14831.

Krishnadev, O and Brinda, KV and Vishveshwara, Saraswathi (2005) A Graph Spectral Analysis of the Structural Similarity Network of Protein Chains. In: Proteins: Structure, Function, and Bioinformatics, 61 . pp. 152-163.

Krishnadev, O and Rekha, N and Pandit, SB and Abhiman, Saraswathi and Mohanty, S and Swapna, LS and Gore, S and Srinivasan, N (2005) PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. In: Nucleic Acids Research, 33 (Web Se). W126-W129.

Krishnadev, O and Srinivasan, N (2011) Prediction of protein-protein interactions between human host and a pathogen and its application to three pathogenic bacteria. In: International Journal of Biological Macromolecules, 48 (4). pp. 613-619.

Krishnadev, Oruganty and Srinivasan, Narayanaswamy (2011) AlignHUSH: Alignment of HMMs using structure and hydrophobicity information. In: BMC Bioinformatics, 12 .

Krishnamurthy, EV and Sankar, PV and Krishnan, S (1974) ALWIN-Algorithmic Wiswesser Notation System for Organic Compounds. In: Journal of Chemical Documentation, 14 (3). pp. 130-141.

Krishnamurthy, Sudeesh and Ghosh, Subho and Chatterji, Dipankar and Ganapathy, Rajesh and Sood, AK (2016) A micrometre-sized heat engine operating between bacterial reservoirs. In: Nature Physics, 12 (12). 1134+.

Krishnamurthy , HM and Vijayan, M (1979) Structural studies of analgesics and their interactions .6. 3-[[3-(Trifluoromethyl)Phenyl]Amino]-3-Pyridine carboxylic acid (Niflumic acid). In: Acta Crystallographica Section B, 35 (JAN). pp. 262-263.

Krishnan, Beena and Kulothungan, Rajendra S and Patra, Ashish K and Udgaonkar, Jayant B and Varadarajan, Raghavan (2009) SecB-Mediated Protein Export Need Not Occur via Kinetic Partitioning. In: Journal of Molecular Biology, 385 (4). pp. 1243-1256.

Krishnan, KS and Balaram, P (1976) Cation Binding to Brain Plasma Membranes. An Evaluation of the Use of Anionic Fluorescent Probes. In: Archives of Biochemistry and Biophysics, 174 . pp. 420-430.

Krishnan, KS and Balaram, P (1976) Mammalian Brain Plasma Membranes: Isolation, Enzymatic, and Characterization. In: Experimental Cell Research, 101 . pp. 299-306.

Krishnan, KS and Balaram, P (1976) Mammalian brain plasma membranes: Isolation, enzymatic, and chemical characterization. In: Experimental Cell Research, 101 (2). pp. 299-306.

Krishnan, KS and Balaram, P (1977) Nuclear Magnetic Resonance Studies of the Enzymatic Hydrolysis of Acetylcholine: A Critical Comment. In: Molecular Pharmacology, 13 (4). pp. 621-624.

Krishnan, KS and Balaram, P (1976) A Nuclear Magnetic Resonance Study of The Interaction of Serotonin With Gangliosides. In: FEBS Letters, 63 (2). pp. 313-315.

Krishnan, KS and Balaram, P (1975) Perturbation of lipid structures by fluorescent probes. In: FEBS Letters, 60 (2). pp. 419-422.

Krishnan, Riki and Balaram, P (2007) Current Science: Some early history. In: Current Science, 92 (1). pp. 129-138.

Krishnan, S and Chatterji, D (2020) Pleiotropic Effects of Bacterial Small Alarmone Synthetases: Underscoring the Dual-Domain Small Alarmone Synthetases in Mycobacterium smegmatis. In: Frontiers in Microbiology, 11 .

Krishnan, Sushma and Petchiappan, Anushya and Singh, Albel and Bhatt, Apoorva and Chatterji, Dipankar (2016) R-loop induced stress response by second (p)ppGpp synthetase in Mycobacterium smegmatis: functional and domain interdependence. In: MOLECULAR MICROBIOLOGY, 102 (1). pp. 168-182.

Krupa, A and Abhinandan, KR and Srinivasan, N (2004) KinG: a database of protein kinases in genomes. In: Nucleic Acids Research, 32 . D153-D155.

Krupa, A and Anamika, * and Srinivasan, N (2006) Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa. In: Gene, 380 (1). pp. 1-13.

Krupa, A and Preethi, G and Srinivasan, N (2004) Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases. In: Journal of Molecular Biology, 339 (5). pp. 1025-1039.

Krupa, A and Preethl, G and Srinivasan, Naranaswamy (2004) Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases. In: Journal of Molecular Biology, 339, (5). pp. 1025-1039.

Krupa, A and Srinivasan, N (2005) Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes. In: Bmc Genomics, 6 (129).

Krupa, A and Srinivasan, N (2002) Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. In: Protein Science, 11 (6). pp. 1580-1584.

Krupa, A and Srinivasan, N (2002) The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations. In: Genome Biology, 3 (12). 0066.1.

Krupa, Ananth and Sandhya, Kumaraswamy and Srinivasan, Narayanaswamy and Jonnalagadda, Sobhanaditya (2003) A conserved domain in prokaryotic bifunctional FAD synthetases can potentially catalyze nucleotide transfer. In: Trends in Biochemical Sciences, 28 (1). pp. 9-12.

Kuang, Zhihe and Zhang, Min-Min and Gupta, Kallol and Gajewiak, Joanna and Gulyas, Jozsef and Balaram, Padmanabhan and Rivier, Jean E and Olivera, Baldomero M and Yoshikami, Doju and Bulaj, Grzegorz and Norton, Raymond S (2013) Mammalian neuronal sodium channel Blocker mu-conotoxin BuIIIB has a structured N-terminus that influences potency. In: ACS Chemical Biology, 8 (6). pp. 1344-1351.

Kulkarni, KA and Srivastava, A and Mitra, N and Sharon, N and Surolia, A and Vijayan, M and Suguna, K (2004) Effect of glycosylation on the structure of Erythrina corallodendron lectin. In: Proteins-Structure Function and Bioinformatics, 56 (4). pp. 821-827.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2007) Generation of blood group specificity: New insights from structural studies on the complexes of A- and B-reactive saccharides with basic winged bean agglutinin. In: Proteins: Structure, Function, and Bioinformatics, 68 (3). pp. 762-769.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2006) Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc. In: Acta Crystallographica Section-D: Biological Crystallography, 62 (11). pp. 1319-1324.

Kulkarni, Kiran A and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2008) Structure and sugar-specificity of basic winged-bean lectin: structures of new disaccharide complexes and a comparative study with other known disaccharide complexes of the lectin. In: Acta Crystallographica Section D: Biological Crystallography, 64 (7). pp. 730-737.

Kulkarni, Kiran A and Sinha, Sharmistha and Katiyar, Samiksha and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2005) Structural basis for the specificity of basic winged bean lectin for the Tn-antigen: A crystallographic, thermodynamic and modelling study. In: Febs Letters, 579 (30). pp. 6775-6780.

Kulothungan, Rajendra S and Das, Mili and Johnson, Madrid and Ganesh, Chandramowli and Varadarajan, Raghavan (2009) Effect of Crowding Agents, Signal Peptide, and Chaperone SecB on the Folding and Aggregation of E. coli Maltose Binding Protein. In: Langmuir, 25 (12). pp. 6637-6648.

Kumar, Anujith and Reddy, Surendranath and Srinivasan, N and Nandi, Dipankar (2009) Interaction Between Two Residues in the Inter-Domain Interface of Escherichia coli Peptidase N Modulates Catalytic Activity. In: Protein and Peptide Letters, 16 (4). pp. 415-422.

Kumar, Sanjay and Kumar, Gyanendra and Kapoor, Mili and Surolia, Avadhesha and Surolia, Namita (2006) Synthesis and Evaluation of Substituted Pyrazoles: Potential Antimalarials Targeting the Enoyl-Acp Reductase of Plasmodium Falciparum. In: Synthetic Communications, 36 (2). pp. 215-226.

Kumar, A and Chandu, Dilip and Nandi, D (2004) Substrate specificity and role of PepN, a metallo-aminoendopeptidase from Escherichia coli. In: Annual Meeting of the American-Society-for-Biochemistry-and-Molecular-Biology/8th Congress of the International-Union-for-Biochemistry-and-Molecular-Biology, JUN 12-16, 2004, Boston, MA.

Kumar, A and Madhurima, K and Naganathan, AN and Vallurupalli, P and Sekhar, A (2023) Probing excited state 1Hα chemical shifts in intrinsically disordered proteins with a triple resonance-based CEST experiment: Application to a disorder-to-order switch. In: Methods, 218 . pp. 198-209.

Kumar, A and Narayanan, V and Sekhar, A (2020) Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy. In: Biochemistry, 59 (1). pp. 57-73.

Kumar, A and Sengupta, N and Dutta, S (2021) Simplified approach for preparing graphene oxide tem grids for stained and vitrified biomolecules. In: Nanomaterials, 11 (3). pp. 1-22.

Kumar, Aditya and Bansal, Manju (2012) Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 423-431.

Kumar, Aditya and Bansal, Manju (2017) Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression. In: DNA RESEARCH, 24 (1). pp. 25-35.

Kumar, Aditya and Manivelan, Vasumathi and Bansal, Manju (2016) Structural features of DNA are conserved in the promoter region of orthologous genes across different strains of Helicobacter pylori. In: FEMS MICROBIOLOGY LETTERS, 363 (18).

Kumar, Ambrish and Arya, Richa and Makwana, Pinakin K and Dangi, Rohit Singh and Yadav, Usha and Surolia, Avadhesha and Kundu, Suman and Sundd, Monica (2015) The Structure of the Holo-Acyl Carrier Protein of Leishmania major Displays a Remarkably Different Phosphopantetheinyl Transferase Binding Interface. In: BIOCHEMISTRY, 54 (36). pp. 5632-5645.

Kumar, Anujith and Bhosale, Manoj and Reddy, Surendranath and Srinivasan, Narayanaswamy and Nandi, Dipankar (2009) Importance of non-conserved distal carboxyl terminal amino acids in two peptidases belonging to the M1 family: Thermoplasma acidophilum Tricorn interacting factor F2 and Escherichia coli Peptidase N. In: Biochimie, 91 (9). pp. 1145-1155.

Kumar, B S Gnanesh and Surolia, Avadhesha (2018) Identification of Banana Lectin Isoforms and Differential Acetylation Through Mass Spectrometry Approaches. In: PROTEIN JOURNAL, 37 (1). pp. 38-46.

Kumar, B S Gnanesh and Surolia, Avadhesha (2017) N-Glycosylation analysis of yeast Carboxypeptidase Y reveals the ultimate removal of phosphate from glycans at Asn(368). In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 98 . pp. 582-585.

Kumar, DJ and Govindaraju, M and Narayan, P and Ramasamy, P and Nagendra, HG and Jagannatha Rao, KS and Easwaran, KRK (2022) Interactions of amyloid precursor protein intracellular domain (AICD) with copper and DNA fragment reveal conformational changes that trigger AD. In: Current Topics in Peptide and Protein Research, 23 . pp. 37-46.

Kumar, G and Duggisetty, SC and Srivastava, A (2022) A Review of Mechanics-Based Mesoscopic Membrane Remodeling Methods: Capturing Both the Physics and the Chemical Diversity. In: Journal of Membrane Biology .

Kumar, G and Srinivasan, N and Sandhya, S (2020) Artificial protein sequences enable recognition of vicinal and distant protein functional relationships. In: Proteins: Structure, Function and Bioinformatics .

Kumar, G and Srivastava, A (2022) Membrane Remodeling Due to a Mixture of Multiple Types of Curvature Proteins. In: Journal of Chemical Theory and Computation .

Kumar, G Senthil and Sarma, Siddhartha P (2010) Cloning, overexpression, folding and purification of a biosynthetically derived three disulfide scorpion toxin (BTK-2) from Mesobuthus tamulus. In: Protein Expression and Purification, 70 (2). pp. 137-142.

Kumar, Ganesan Senthil and Ramasamy, Palanisamy and Sikdar, Sujit K and Sarma, Siddhartha P (2005) Overexpression, purification, and pharmacological activity of a biosynthetically derived conopeptide. In: Biochemical and Biophysical Research Communications, 335 (3). pp. 965-972.

Kumar, Gayatri and Mudgal, Richa and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2018) Use of designed sequences in protein structure recognition. In: BIOLOGY DIRECT, 13 .

Kumar, Gayatri and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2022) Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Gaps: Implications in Distant Homology Detection. [Book Chapter]

Kumar, Gnanesh and Mishra, Padmanabh and Anantharam, Vellareddy and Surolia, Avadhesha (2015) Luffa acutangula agglutinin: Primary structure determination and identification of a tryptophan residue involved in its carbohydrate-binding activity using mass spectrometry. In: IUBMB LIFE, 67 (12). pp. 943-953.

Kumar, Gnanesh B S and Surolia, Avadhesha (2017) Comprehensive analysis of alpha 2-3-linked sialic acid specific Maackia amurensis leukagglutinin reveals differentially occupied N-glycans and C-terminal processing. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 94 (A). pp. 114-121.

Kumar, Gnanesh B S and Surolia, Avadhesha (2016) Site specific N-glycan profiling of NeuAc(alpha 2-6)-Gal/GalNAc-binding bark Sambucus nigra agglutinin using LC-MSn revealed differential glycosylation. In: GLYCOCONJUGATE JOURNAL, 33 (6). pp. 907-915.

Kumar, Gyanendra and Parasuraman, Prasanna and Sharma, Shailendra Kumar and Banerjee, Tanushree and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2007) Discovery of a Rhodanine Class of Compounds as Inhibitors of Plasmodium falciparum Enoyl-Acyl Carrier Protein Reductase. In: Journal Of Medical Chemisty, 50 (11). pp. 2665-2675.

Kumar, Kaleesh M and Jha, Niki S and Mohan, S and Jha, Shailendra K (2014) Reduced graphene oxide-supported nickel oxide catalyst with improved CO tolerance for formic acid electrooxidation. In: INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, 39 (24). pp. 12572-12577.

Kumar, Manish and Chatterji, Dipankar (2008) Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis. In: Microbiology, 154 (Part 1). pp. 2942-2955.

Kumar, Mukesh and Behera, Aruna K and Kumar, Sanjay and Srinivas, VR and Das, Hasi R and Surolia, Avadhesha and Das, Rakha H (1999) Expression, Purification and Characterization of Peanut (Arachis hypogaea) Agglutinin (PNA) from Baculovirus Infected Insect Cells. In: Bioscience Reports, 19 (3). pp. 227-234.

Kumar, N and Ghosh, M and Manikandan, P and Basak, S and Deepa, A and Singh, M (2022) Resonance assignment and secondary structure of the tandem harmonin homology domains of human RTEL1. In: Biomolecular NMR Assignments, 16 (1). pp. 159-164.

Kumar, N and Taily, IM and Singh, C and Kumar, S and Rajmani, RS and Chakraborty, D and Sharma, A and Singh, P and Thakur, KG and Varadarajan, R and Ringe, RP and Banerjee, P and Banerjee, I (2023) Identification of diphenylurea derivatives as novel endocytosis inIdentification of diphenylurea derivatives as novel endocytosis inhibitors that demonstrate broad-spectrum activity against SARS-CoV-2 and influenza A virus both in vitro and in vivohibitors that demonstrate broad-spectrum activity against SARS-CoV-2 and influenza A virus both in vitro and in vivo. In: PLoS Pathogens, 19 (5).

Kumar, N and Taneja, A and Ghosh, M and Rothweiler, U and Sundaresan, NR and Singh, M (2024) Harmonin homology domain-mediated interaction of RTEL1 helicase with RPA and DNA provides insights into its recruitment to DNA repair sites. In: Nucleic Acids Research, 52 (3). pp. 1450-1470.

Kumar, PS Anil and Chatterji, Dipankar (2009) A decade of KVPY - A challenging experience. In: Current science, 97 (9). pp. 1282-1286.

Kumar, Parimal and Chhibber, Manmohan and Surolia, Avadhesha (2007) How pantothenol intervenes in Coenzyme-A biosynthesis of Mycobacterium tuberculosis. In: Biochemical and Biophysical Research Communications, 361 (4). pp. 903-909.

Kumar, Prasun and Bansal, Manju (2015) Dissecting pi-helices: sequence, structure and function. In: FEBS JOURNAL, 282 (22). pp. 4415-4432.

Kumar, Prasun and Bansal, Manju (2012) HELANAL-Plus: a web server for analysis of helix geometry in protein structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 30 (6). pp. 773-783.

Kumar, Prasun and Bansal, Manju (2015) Identification of local variations within secondary structures of proteins. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (5). pp. 1077-1086.

Kumar, Prasun and Bansal, Manju (2016) Structural and functional analyses of PolyProline-II helices in globular proteins. In: JOURNAL OF STRUCTURAL BIOLOGY, 196 (3). pp. 414-425.

Kumar, Prasun and Halder, Swagata and Bansal, Manju (2019) Biomolecular Structures: Prediction, Identification and Analyses. [Book Chapter]

Kumar, Prasun and Kailasam, Senthilkumar and Chakraborty, Shaunak and Bansal, Manju (2014) MolBridge: a program for identifying nonbonded interactions in small molecules and biomolecular structures. In: JOURNAL OF APPLIED CRYSTALLOGRAPHY, 47 (5). pp. 1772-1776.

Kumar, Ritesh and Srivastava, Richa and Singh, Ramendra Kumar and Surolia, Avadhesha and Rao, Desirazu N (2008) Activation and inhibition of DNA methyltransferases by S-adenosyl-$L$-homocysteine analogues. In: Bioorganic & Medicinal Chemistry, 16 (5). pp. 2276-2285.

Kumar, S and Athreya, A and Gulati, A and Nair, RM and Mahendran, I and Ranjan, R and Penmatsa, A (2021) Structural basis of inhibition of a transporter from Staphylococcus aureus, NorC, through a single-domain camelid antibody. In: Communications Biology, 4 (1).

Kumar, S and Bansal, M (1998) Dissecting alpha-helices: Position-specific analysis of alpha-helices in globular proteins. In: Proteins: Structure, Funcaction, and Bioinformatics, 31 (4). pp. 460-470.

Kumar, S and Khan, MZ and Khandelwal, N and Chongtham, C and Singha, B and Dabla, A and Behera, D and Singh, A and Gopal, B and Arimbasseri, GA and Kamat, SS and Nandicoori, VK (2022) Mycobacterium tuberculosis Transcription Factor EmbR Regulates the Expression of Key Virulence Factors That Aid in Ex Vivo and in Vivo Survival. In: mBio, 13 (3).

Kumar, S and Mahendran, I and Athreya, A and Ranjan, R and Penmatsa, A (2020) Isolation and structural characterization of a Zn2+-bound single-domain antibody against NorC, a putative multidrug efflux transporter in bacteria. In: The Journal of biological chemistry, 295 (1). pp. 55-68.

Kumar, S and Singh, S and Chatterjee, A and Bajpai, P and Sharma, S and Katpara, S and Bhakhri, H and Lodha, R and Dutta, S and Luthra, K (2023) Erratum: Recognition determinants of improved HIV-1 neutralization by a heavy chain matured pediatric antibody (iScience (2023) 26(9), (S2589004223016565), (10.1016/j.isci.2023.107579)). In: iScience, 26 (10).

Kumar, S and Singh, S and Chatterjee, A and Bajpai, P and Sharma, S and Katpara, S and Lodha, R and Dutta, S and Luthra, K (2023) Recognition determinants of improved HIV-1 neutralization by a heavy chain matured pediatric antibody. In: iScience, 26 (9).

Kumar, S and Venkatesha, MA and Balaram, P (2022) Mechanistic Investigations on N-CαBond Cleavages in Dibasic Peptides Containing Internal Lys and Arg Residues. In: Journal of the American Society for Mass Spectrometry, 33 (9). pp. 1598-1606.

Kumar, S and Venkatesha, MA and Lall, S and Prakash, S and Balaram, P (2020) Mechanistic Insights into an Unusual Side-Chain-Mediated N-CÎ±Bond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin. In: Journal of the American Society for Mass Spectrometry, 31 (5). pp. 1083-1092.

Kumar, S and Vijayasarathy, M and Venkatesha, MA and Sunita, P and Balaram, P (2020) Cone snail analogs of the pituitary hormones oxytocin/vasopressin and their carrier protein neurophysin. Proteomic and transcriptomic identification of conopressins and conophysins. In: Biochimica et Biophysica Acta - Proteins and Proteomics, 1868 (5).

Kumar, Sandeep and Bansal, Manju (1998) Geometrical and Sequence Characteristics of $\alpha$-Helices in Globular Proteins. In: Biophysical Journal, 75 (4). pp. 1935-1944.

Kumar, Sandeep and Bansal, Manju (1996) Structural and Sequence Characteristics of Long alpha Helices in Globular Proteins. In: Biophysical Journal., 71 (03). pp. 1574-1586.

Kumar, Sanjay and Kapoor, Mili and Surolia, Namita and Surolia, Avadhesha (2004) One Step Synthesis of Novel Antimicrobial 2-Hydroxy Diaryl Ethers Through Domestic Microwave Heating. In: Synthetic Communications, 34 (3). pp. 413-420.

Kumar, Sanjeev and Panda, Harekrushna and Makhdoomi, Muzamil Ashraf and Mishra, Nitesh and Safdari, Haaris Ahsan and Chawla, Himanshi and Aggarwal, Heena and Reddy, Elluri Seetharami and Lodha, Rakesh and Kabra, Sushil Kumar and Chandele, Anmol and Dutta, Somnath and Luthra, Kalpana (2019) An HIV-1 Broadly Neutralizing Antibody from a Clade C-Infected Pediatric Elite Neutralizer Potently Neutralizes the Contemporaneous and Autologous Evolving Viruses. In: JOURNAL OF VIROLOGY, 93 (4).

Kumar, Sanjeev and Prakash, Sunita and Gupta, Kallol and Dongre, Aparna and Balaram, Padmanabhan and Balaram, Hemalatha (2016) Unexpected functional implication of a stable succinimide in the structural stability of Methanocaldococcus jannaschii glutaminase. In: NATURE COMMUNICATIONS, 7 .

Kumar, Satish M and Mrudula, T and Mitra, N and Reddy, Bhanuprakash G (2004) Enhanced degradation and decreased stability of eye lens \alpha-crystallin upon methylglyoxal modification. In: Experimental Eye Research, 79 (4). pp. 577-583.

Kumar, Senthil G and Upadhyay, Sanjeev and Mathew, MK and Sarma, Siddhartha P (2011) Solution structure of BTK-2, a novel hK(v)1.1 inhibiting scorpion toxin, from the eastern Indian scorpion Mesobuthus tamulus. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1814 (4). pp. 459-469.

Kumar, Sivakumar Prasanth (2018) PLHINT: A knowledge-driven computational approach based on the intermolecular H bond interactions at the protein-ligand interface from docking solutions. In: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 79 . pp. 194-212.

Kumar, Sivakumar Prasanth (2018) Receptor pharmacophore ensemble (REPHARMBLE): a probabilistic pharmacophore modeling approach using multiple protein-ligand complexes. In: JOURNAL OF MOLECULAR MODELING, 24 (10).

Kumar, Suresh EVK and Singh, Jai D and Singh, Harkesh B and Das, Kalyan and Verghese, Babu (1997) Synthesis of some functionalised isomeric bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF) and dithiophenetetrathiafulvalene (DTTTF) pi-donors. In: Tetrahedron, 53 (34). pp. 11627-11644.

Kumar, Sushant and Ramappa, Raghavendra and Pamidimukkala, Kiranmayee and Rao, C D and Suguna, K (2018) New tetrameric forms of the rotavirus NSP4 with antiparallel helices. In: ARCHIVES OF VIROLOGY, 163 (6). pp. 1531-1547.

Kumar, Sushant and Suguna, Kaza (2018) Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein. In: FEBS OPEN BIO, 8 (9). pp. 1379-1394.

Kumari, N and Bandyopadhyay, D and Kumar, V and Venkatesh, DB and Prasad, S and Prakash, S and Krishnaswamy, PR and Balaram, P and Bhat, N (2021) Glycation of albumin and its implication in Diabetes: A comprehensive analysis using mass spectrometry. In: Clinica Chimica Acta, 520 . pp. 108-117.

Kunal, K and Tiwari, R and Dhaked, HPS and Surolia, A and Panda, D (2020) Mechanistic insight into the effect of BT-benzo-29 on the Z-ring in Bacillus subtilis. In: IUBMB Life .

Kundu, N and Verma, P and Kumar, A and Dhar, V and Dutta, S and Chattopadhyay, K (2020) N-Terminal Region of Vibrio parahemolyticus Thermostable Direct Hemolysin Regulates the Membrane-Damaging Action of the Toxin. In: Biochemistry, 59 (4). pp. 605-614.

Kurre, D and Suguna, K (2021) Network of Entamoeba histolytica HSP18.5 dimers formed by two overlapping IV-X-IV motifs. In: Proteins: Structure, Function and Bioinformatics .

Kurthkoti, Krishna and Tare, Priyanka and Paitchowdhury, Rakhi and Gowthami, Vykuntham Naga and Garcia, Maria J and Colangeli, Roberto and Chatterji, Dipankar and Nagaraja, Valakunja and Rodriguez, Marcela G (2015) The mycobacterial iron-dependent regulator IdeR induces ferritin (bfrB) by alleviating Lsr2 repression. In: MOLECULAR MICROBIOLOGY, 98 (5). pp. 864-877.

L

Lahiri, Priyanka and Verma, Hitesh and Ravikumar, Ashraya and Chatterjee, Jayanta (2018) Protein stabilization by tuning the steric restraint at the reverse turn. In: CHEMICAL SCIENCE, 9 (20). pp. 4600-4609.

Lakshmanan, J (1979) Involvement of cytoskeletal structures in nerve-growth-factor-mediated induction of ornithine decarboxylase. In: Biochemical Journal, 178 (1). pp. 245-248.

Lakshmanan, J (1978) Involvement of post-synaptic cytoskeleton in nerve growth factor-induce 'PI-effect. In: FEBS Letters, 95 (1). 161-164 .

Lakshmanan, J (1978) Is there a second messenger for nerve growth factor-induced phosphatidylinositol turnover in rat superior cervical ganglia? In: Brain Research, 157 (1). 173-177 .

Lakshmanan, J (1978) Nerve growth factor induced turnover of phosphatidylinositol in rat superior cervical ganglia. In: FEBS Letters, 92 (2). 159-162 .

Lakshmanan, J (1979) Post-synaptic PI-effect of nerve growth factor in rat superior cervical ganglia. In: Journal of Neurochemistry, 32 (5). 1599-1601 .

Lakshmi, B and Archunan, G and Srinivasan, N (2013) PROPENSITIES OF AMINO ACID RESIDUES IN PROTEINS FOR DIFFERENT REGIONS OF THE RAMACHANDRAN MAP. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 128-135.

Lakshmi, B and Ramakrishnan, C and Archunan, G and Sowdhamini, R and Srinivasan, N (2014) Investigations of Ramachandran disallowed conformations in protein domain families. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 63 . pp. 119-125.

Lakshmi, Balasubramanian and Mishra, Madhulika and Srinivasan, Narayanaswamy and Archunan, Govindaraju (2015) Structure-Based Phylogenetic Analysis of the Lipocalin Superfamily. In: PLOS ONE, 10 (8).

Lakshmi, Balasubramanian and Sinduja, Chandrasekaran and Archunan, Govind and Srinivasan, Narayanaswamy (2014) Ramachandran analysis of conserved glycyl residues in homologous proteins of known structure. In: PROTEIN SCIENCE, 23 (6). pp. 843-850.

Lakshmi, Udaya K and Thamotharan, S and Srinivasan, M and Ramamurthi, K and Varghese, B (2005) 3-Nitrocinnamic acid. In: Acta Crystallographica Section E: Structure Reports Online, 61 . O3636-O3638.

Lakshmikandan, M and Sivaraman, K and Raja, Elaiya S and Vasanthakumar, P and Rajesh, RP and Sowparthani, K and Jebasingh, Emmanuel Joshua S (2014) Biodegradation of acrylamide by acrylamidase from Stenotrophomonas acidaminiphila MSU12 and analysis of degradation products by MALDI-TOF and HPLC. In: INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 94 . pp. 214-221.

Lands, William EM and Surolia, Avadhesha (1997) Professor Bimal Kumar Bachhawat, 1925-1996 - Obituary. In: Trends in Biochemical Sciences, 22 (2). p. 48.

Lata, K and Charles, S and Mangala Prasad, V (2023) Advances in computational approaches to structure determination of alphaviruses and flaviviruses using cryo-electron microscopy. In: Journal of Structural Biology, 215 (3).

Latha, PK and Brahmachari, Samir K (1986) B to Z transitions in DNA and their biological implications. In: Journal of Scientific & Industrial Research, 45 (12). pp. 521-533.

Latha, PK and Brahmachari, Samir K (1985) A Novel Structural Transition In Poly(Dg-Me5dc) - Z Reversible B Reversible Z. In: FEBS Letters, 182 (2). pp. 315-318.

Latha, VL and Kulkarni, KA and Rao, RN and Kumar, NS and Suguna, K (2006) Crystallization and preliminary X-ray crystallographic analysis of a galactose-specific lectin from Dolichos lablab. In: Acta Crystallographica Section F-Structural Biology And Crystallization Communications, 62 (Part 2). pp. 163-165.

Lebedenko, O and Sekhar, A and Skrynnikov, N (2024) Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective. In: Proteins: Structure, Function and Bioinformatics .

Lenin, VMS and Parthasarathy, S and Murthy, MRN (2000) Atomic displacement parameters of homologous proteins: Conservation of dynamics. In: Current Science, 78 (9). pp. 1098-1105.

Leonard, Sylvain and Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and Gelly, Jean-Christophe and de Brevern, Alexandre G (2014) mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 32 (4). pp. 661-668.

Liang, Z and Lin, X and Sun, L and Edwards, KM and Song, W and Sun, H and Xie, Y and Lin, F and Ling, S and Liang, T and Xiao, B and Wang, J and Li, M and Leung, C-Y and Zhu, H and Bhandari, N and Varadarajan, R and Levine, MZ and Peiris, M and Webster, R and Dhanasekaran, V and Leung, NHL and Cowling, BJ and Webby, RJ and Ducatez, M and Zanin, M and Wong, S-S (2024) A(H2N2) and A(H3N2) influenza pandemics elicited durable cross-reactive and protective antibodies against avian N2 neuraminidases. In: Nature Communications, 15 (1).

Liddle, W Kevin and Willis, Todd W and Tu, Anthony T and Sankaram, MB and Devarajan, S and Easwaran, KRK (1985) Raman Spectroscopic study of valinomycin-metal complexes. In: Chemistry and Physics of Lipids, 36 (4). pp. 303-308.

Lokesh, Bhushan and Rashmi, Panigrahi R and Amruta, Bhat S and Srisathiyanarayanan, Dharmaiah and Murthy, Mathur RN and Savithri, Handanahal S (2010) NSs Encoded by Groundnut Bud Necrosis Virus Is a ifunctional Enzyme. In: PLos One, 5 (3).

Lokesh, GL and Gowri, TDS and Satheshkumar, PS and Murthy, MRN and Savithri, HS (2002) A Molecular Switch in the Capsid Protein Controls the Particle Polymorphism in an Icosahedral Virus. In: Virology, 292 (2). pp. 211-223.

Lokeshwar, L Balakrishna and Nanjundiah, Vidyanand (1981) The scale-invariance of spatial patterning in a developing system. In: Wilhelm Roux's Archives of Developmental Biology, 190 (6). pp. 361-364.

Luthra, Abhinav and Jha, Anupam Nath and Ananthasuresh, GK and Vishveswara, Saraswathi (2007) A method for computing the inter-residue interaction potentials for reduced amino acid alphabet. In: Journal of Biosciences, 32 (5). pp. 883-889.

M

Ma, Wen-Jong and Iyer, Lakshmanan K and Vishveshwara, Saraswathi and Koplik, Joel and Banavar, Jayanth R (1995) Molecular-dynamics studies of systems of confined dumbbell molecules. In: Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 51 (1). pp. 441-453.

Madan, Lalima L and Gopal, B (2008) Addition of a polypeptide stretch at the N-terminus improves the expression, stability and solubility of recombinant protein tyrosine phosphatases from Drosophila melanogaster. In: Protein Expression and Purification, 57 (2). pp. 234-243.

Madan, Lalima L and Gopal, B (2011) Conformational Basis for Substrate Recruitment in Protein Tyrosine Phosphatase 10D. In: Biochemistry, 50 (46). pp. 10114-10125.

Madan, Lalima L and Goutam, Kapil and Gopal, B (2012) Inter-domain interactions influence the stability and catalytic activity of the bi-domain protein tyrosine phosphatase PTP99A. In: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1824 (8). pp. 983-990.

Madan, Lalima L and Veeranna, S and Shameer, Khader and Reddy, Chilamakuri CS and Sowdhamini, R and Gopal, B (2011) Modulation of Catalytic Activity in Multi-Domain Protein Tyrosine Phosphatases. In: PLos One, 6 (9).

Madan Babu, M and Kumar Singh , S and Balaram, Padmanabhan (2002) A C-Hâ€¦O hydrogen bond stabilized polypeptide chain reversal motif at the C-terminus helices in proteins. In: Journal of Molecular Biology, 322 (4). 871-880 .

Madhav, TR and Vatsala, S and Ramakrishna, T and Ramesh, J and Easwaran, KRK (1996) Preservation of native conformation during aluminium-induced aggregation of tau protein. In: NeuroReport, 7 (5). pp. 1072-1076.

Madhumalar, A and Bansal, Manju (2005) Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis. In: Journal of Biomolecular Structure & Dynamics, 23 (1). pp. 13-27.

Madhumalar, A and Bansal, Manju (2003) Structural Insights into the Effect of Hydration and Ions on A-Tract DNA: A Molecular Dynamics Study. In: The Biophysical Journal, 85 (3). pp. 1805-1816.

Madhurima, K and Nandi, B and Munshi, S and Naganathan, AN and Nandi, A (2023) Functional regulation of an intrinsically disordered protein via a conformationally excited state. In: Science advances, 9 (26). eadh4591.

Madhurima, K and Nandi, B and Sekhar, A (2021) Metamorphic proteins: The Janus proteins of structural biology. Royal Society Publishing.

Madhusudan, * and Kodandapani, R and Vijayan, M (1993) Protein Hydration and Water Structure: X-ray Analysis of a Closely Packed Protein Crystal with Very Low Solvent Content. In: Acta Crystallographica Section D, 49 (Part 2). pp. 234-245.

Madhusudan, * and Vijayan, M (1991) Rigid and flexible region in lysozyme and the invariant features in its hydration shell. In: Current Science (Bangalore), 60 (3). pp. 165-170.

Madhusudhan, MS and Vishveshwara, S (2000) Molecular dynamics simulations of modelled angiogenin-mononucleotide complexes. In: Current Science, 78 (7). pp. 852-857.

Madhusudhan, MS and Sanjeev, BS and Vishveshwara, S (2001) Computer Modeling and Molecular Dynamics Simulations of Ligand Bound Complexes of Bovine Angiogenin: Dinucleotide Topology at the Active Site of RNase A Family Proteins. In: Proteins: Structure, Function, and Genetics, 45 (1). pp. 30-39.

Madhusudhan, MS and Vishveshwara, S (2001) Computer Modeling of Human Angiogenin-Dinucleotide Substrate Interaction. In: Proteins: Structure, Function, and Genetics, 42 (1). pp. 125-135.

Madhusudhan, MS and Vishveshwara, S (2001) Deducing Hydration Sites of a Protein from Molecular Dynamics Simulations. In: Journal of Biomolecular Structure & Dynamics, 19 (1). pp. 105-114.

Madhusudhan, MS and Vishveshwara, S (1998) Modeling of angiogenin-3 '-NMP complex. In: Journal of Biomolecular Structure & Dynamics, 16 (3). pp. 715-722.

Madhusudhan, MS and Vishveshwara, S and Das, A and Kalra, P and Jayaram, B (2001) A molecular dynamics study based post facto free energy analysis of the binding of bovine angiogenin with UMP and CMP ligands. In: Indian Journal of Biochemistry & Biophysics, 38 (1-2). pp. 27-33.

Madhusudhan, MS and Vishveshwara, Saraswathi (1999) Comparison of the Dynamics of Bovine and Human Angiogenin: A Molecular Dynamics Study. In: Biopolymers, 49 (2). pp. 131-144.

Mahajan, A and Sharma, A and Chavali, S and Kabra, M and Chowdhury, MR and Srinivasan, N and Bharadwaj, D (2004) Novel missense mutation in the coagulation factor IX catalytic domain associated with severe haemophilia B- Factor $IX_{Delhi}$. In: Haemophilia, 10 (5). pp. 550-552.

Mahajan, Swapnil and Agarwal, Garima and Iftekhar, Mohammed and Offmann, Bernard and de Brevern, Alexandre G and Srinivasan, Narayanaswamy (2013) DoSA: Database of Structural Alignments. In: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2013 .

Mahajan, Swapnil and de Brevern, Alexandre G and Offmann, Bernard and Srinivasan, Narayanaswamy (2014) Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 32 (5). pp. 751-758.

Mahajan, Swapnil and de Brevern, Alexandre G and Sanejouand, Yves-Henri and Srinivasan, Narayanaswamy and Offmann, Bernard (2015) Use of a structural alphabet to find compatible folds for amino acid sequences. In: PROTEIN SCIENCE, 24 (1). pp. 145-153.

Mahalakshmi, R and Sengupta, A and Raghothama, S and Shamala, N and Balaram, P (2005) Tryptophan-containing peptide helices: interactions involving the indole side chain. In: Journal of Peptide Research, 66 (5). pp. 277-296.

Mahalakshmi, Radhakrishnan and Balaram, Padmanabhan (2006) Non-Protein Amino Acids in the Design of Secondary Structure Scaffolds. In: Protein Design, 340 . pp. 71-94.

Mahalakshmi, Radhakrishnan and Raghothama, Srinivasa Rao and Balaram, Padmanabhan (2006) NMR Analysis of Aromatic Interactions in Designed Peptide \beta -Hairpins. In: Journal of the American Chemical Society, 128 (4). pp. 1125-1138.

Mahalakshmi, Radhakrishnan and Sengupta, Anindita and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2007) Tryptophan Rich Peptides: Influence of Indole Rings on Backbone Conformation. In: Peptide Science, 88 (1). pp. 36-54.

Mahalakshmi, Radhakrishnan and Shanmugam, Ganesh and Polavarapu, Prasad L and Balaram, Padmanabhan (2005) Circular Dichroism of Designed Peptide Helices and \beta -Hairpins: Analysis of Trp-and Tyr-Rich Peptides. In: ChemBioChem, 6 (12). pp. 2152-2158.

Mahanta, SK and Sanke, S and Rao, NV and Swamy, MJ and Surolia, A (1992) Primary structure of a Thomsen-Friedenreich-antigen-specific lectin, jacalin [Artocarpus integrifolia (jack fruit) agglutinin]. Evidence for the presence of an internal repeat. In: Biochemical Journal, 284 (1). pp. 95-101.

Mahanta, SK and Sastry, MV and Surolia, A (1990) Topography of the combining region of a Thomsen-Friedenreich-antigen-specific lectin jacalin (Artocarpus integrifolia agglutinin). A thermodynamic and circular-dichroism spectroscopic study. In: Biochemical Journal, 265 (3). pp. 831-840.

Mahapa, Avisek and Samanta, Gopal Ch and Maiti, Krishnagopal and Chatterji, Dipankar and Jayaraman, Narayanaswamy (2019) Mannopyranoside Glycolipids Inhibit Mycobacterial and Biofilm Growth and Potentiate Isoniazid Inhibition Activities in M. smegmatis. In: CHEMBIOCHEM, 20 (15). pp. 1966-1976.

Mahesha, HG and Singh, Sandeep B and Srinivasan, N and Rao, AGA (2006) A spectroscopic study of the interaction of isoflavones with human serum albumin. In: FEBS Journal, 273 (3). pp. 451-467.

Maithal, Kapil and Ravindra, Gudihal and Balaram, Hemalatha and Balaram, Padmanabhan (2002) Inhibition of Plasmodium falciparum Triose-phosphate Isomerase by Chemical Modification of an Interface Cysteine: Electrospray Ionization Mass Spectrometric Analysis of Differential Cysteine Reactivities. In: Journal of Biological Chemistry, 277 (28). pp. 25106-25114.

Maithal, Kapil and Ravindra, Gudihal and Nagaraj, G and Singh, Kumar S and Balaram, Hemalatha and Balaram, P (2002) Subunit interface mutation disrupting an aromatic cluster in Plasmodium falciparum triosephosphate isomerase: effect on dimer stability. In: Protein Engineering, 15 (7). pp. 575-584.

Maiti, Amit K and Brahmachari, Samir K (2001) Poly purine.pyrimidine sequences upstream of the beta-galactosidase gene affect gene expression in Saccharomyces cerevisiae. In: BMC Molecular Biology, 2 (11).

Maitra, A and Sarkar, MC and Raheja, H and Biswas, NK and Chakraborti, S and Singh, AK and Ghosh, S and Sarkar, S and Patra, S and Mondal, RK and Ghosh, T and Chatterjee, A and Banu, H and Majumdar, A and Chinnaswamy, S and Srinivasan, N and Dutta, S and Das, S (2020) Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility. In: Journal of Biosciences, 45 (1).

Maity, Koustav and Bajaj, Preeti and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2012) Insights into the Substrate Specificity of a Thioesterase Rv0098 of Mycobacterium Tuberculosis through X-ray Crystallographic and Molecular Dynamics Studies. In: Journal of Biomolecular Structure & Dynamics, 29 (5). pp. 973-983.

Maity, Koustav and Banerjee, Tanushree and Prabakaran, Narayanappa and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2011) Effect of Substrate Binding Loop Mutations on the Structure, Kinetics, and Inhibition of Enoyl Acyl Carrier Protein Reductase from Plasmodium falciparum. In: IUBMB Life, 63 (1). pp. 30-41.

Maity, Koustav and Bhargav, Saligram Prabhakar and Sankaran, Banumathi and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2010) X-ray Crystallographic Analysis of the Complexes of Enoyl Acyl Carrier Protein Reductase of Plasmodium falciparum with Triclosan Variants to Elucidate the Importance of Different Functional Groups in Enzyme Inhibition. In: IUBMB Life, 62 (6). pp. 467-476.

Maity, Koustav and Venkata, Bharat Somireddy and Kapoor, Neha and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2011) Structural basis for the functional and inhibitory mechanisms of beta-hydroxyacyl-acyl carrier protein dehydratase (FabZ) of Plasmodium falciparum. In: Journal of Structural Biology, 176 (2). pp. 238-249.

Maity, N and Majumder, K and Patel, AK and Swain, D and Suryaprakash, N and Patil, S (2022) Synthesis and Emergent Photophysical Properties of Diketopyrrolopyrrole-Based Supramolecular Self-Assembly. In: ACS Omega, 7 (27). pp. 23179-23188.

Majumdar, S and Sikdar, SK (2005) Fast Pseudo-Periodic Oscillation in the Rat Brain Voltage-gated Sodium Channel α Subunit. In: Journal of Membrane Biology, 208 (1). pp. 1-14.

Majumdar, Sriparna and Foster, Grant and Sikdar, Sujit K (2004) Induction of pseudo-periodic oscillation in voltage-gated sodium channel properties is dependent on the duration of prolonged depolarization. In: European Journal of Neuroscience, 20 (1). pp. 127-143.

Majumdar, Sriparna and Sikdar, Sujit K (2006) G-protein activation modulates pseudo-periodic oscillation of Na channel. In: Biochemical And Biophysical Research Communications, 347 (2). pp. 444-451.

Majumdar, Sriparna and Sikdar, Sujit K (2007) Periodicity in $Na^+$ channel properties alters excitability of a model neuron. In: Biochemical and Biophysical Research Communications, 359 (4). pp. 908-914.

Majumder, K and Brahmachari, SK (1989) Sequence specificity in spermine-induced structural changes in CG-oligomers. In: Biochemistry International, 18 (2). pp. 455-465.

Majumder, Kumud and Kadalayil, Latha P and Brahmachari, SK (1987) Synthesis and Purification of Oligodeoxyribonucleotides: A Modified Approach. In: Current Science, 56 (14). pp. 693-697.

Majumder, K and Mishra, RK and Bansal, Manju and Brahmachari, SK (1989) Sequence criteria for Z-DNA formation: studies on poly d(ACGT). In: Nucleic Acids Research, 17 (1). p. 450.

Majumder, K and Ramesh, N (1987) A new polymer supported packing material as a substitute of hydroxylapatite: Purification of Topoisomerases. In: Chromatographia, 24 (1). pp. 400-402.

Majumder, Kumud and Brahmachari, Samir K and Sasisekharan, V (1986) Sequence dependence and role of 5'-phosphate in the B to Z transition. In: FEBS Letters, 198 (2). 240 -244.

Majumder, Kumud and Latha, PK and Brahmachari, Samir K (1986) Use of a volatile buffer at ambient temperature *1: Versatile approach to the purification of self-complementary synthetic deoxyoligonucleotides by reversed-phase high-performance liquid chromatography. In: Journal of Chromatography A, 355 (1). pp. 328-334.

Majumder, P and Ahmed, S and Ahuja, P and Athreya, A and Ranjan, R and Penmatsa, A (2023) Cryo-EM structure of antibacterial efflux transporter QacA from Staphylococcus aureus reveals a novel extracellular loop with allosteric role. In: EMBO Journal .

Majumder, Puja and Khare, Shashank and Athreya, Arunabh and Hussain, Nazia and Gulati, Ashutosh and Penmatsa, Aravind (2019) Dissection of Protonation Sites for Antibacterial Recognition and Transport in QacA, a Multi-Drug Efflux Transporter. In: JOURNAL OF MOLECULAR BIOLOGY, 431 (11). pp. 2163-2179.

Majumder, Puja and Mallela, Aditya Kumar and Penmatsa, Aravind (2018) Transporters Through the Looking Glass: An Insight into the Mechanisms of Ion-Coupled Transport and Methods That Help Reveal Them. In: JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE, 98 (3). pp. 283-300.

Malladi, SK and Patel, UR and Rajmani, RS and Singh, R and Pandey, S and Kumar, S and Khaleeq, S and Van Vuren, PJ and Riddell, S and Goldie, S and Gayathri, S and Chakraborty, D and Kalita, P and Pramanick, I and Agarwal, N and Reddy, P and Girish, N and Upadhyaya, A and Khan, MS and Kanjo, K and Bhat, M and Mani, S and Bhattacharyya, S and Siddiqui, S and Tyagi, A and Jha, S and Pandey, R and Tripathi, S and Dutta, S and McAuley, AJ and Singanallur, NB and Vasan, SS and Ringe, RP and Varadarajan, R (2021) Immunogenicity and Protective Efficacy of a Highly Thermotolerant, Trimeric SARS-CoV-2 Receptor Binding Domain Derivative. In: ACS Infectious Diseases .

Malladi, SK and Schreiber, D and Pramanick, I and Sridevi, MA and Goldenzweig, A and Dutta, S and Fleishman, SJ and Varadarajan, R (2020) One-step sequence and structure-guided optimization of HIV-1 envelope gp140. In: Current Research in Structural Biology, 2 . pp. 45-55.

Malladi, SK and Singh, R and Pandey, S and Gayathri, S and Kanjo, K and Ahmed, S and Khan, MS and Kalita, P and Girish, N and Upadhyaya, A and Reddy, P and Pramanick, I and Bhasin, M and Mani, S and Bhattacharyya, S and Joseph, J and Thankamani, K and Raj, VS and Dutta, S and Singh, R and Nadig, G and Varadarajan, R (2021) Design of a highly thermotolerant, immunogenic SARS-CoV-2 spike fragment. In: Journal of Biological Chemistry, 296 .

Mallajosyula, VVA and Swaroop, S and Varadarajan, R (2020) Influenza Hemagglutinin Head Domain Mimicry by Rational Design. In: Protein Journal, 39 (5). pp. 434-448.

Mallajosyula, Vamsee Aditya V and Citron, Michael and Ferrara, Francesca and Temperton, Nigel J and Liang, Xiaoping and Flynn, Jessica A and Varadarajan, Raghavan (2015) Hemagglutinin sequence conservation guided stem immunogen design from influenza A H3 subtype. In: FRONTIERS IN IMMUNOLOGY, 6 .

Mallajosyula, Vamsee Aditya V and Citron, Michael and Lu, Xianghan and ter Meulen, Jan and Varadarajan, Raghavan and Liang, Xiaoping (2013) In vitro and in vivo characterization of designed immunogens derived from the CD-helix of the stem of influenza hemagglutinin. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 81 (10). pp. 1759-1775.

Mallajosyula, Vamsee VA and Citron, Michael and Ferrara, Francesca and Lu, Xianghan and Callahan, Cheryl and Heidecker, Gwendolyn J and Sarma, Siddhartha P and Flynn, Jessica A and Temperton, Nigel J and Liang, Xiaoping and Varadarajan, Raghavan (2014) Influenza hemagglutinin stem-fragment immunogen elicits broadly neutralizing antibodies and confers heterologous protection. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111 (25). E2514-E2523.

Mallikarjuna, BP and Sastry, BS and Kumar, Suresh GV and Rajendraprasad, Y and Chandrashekar, SM and Sathisha, K (2009) Synthesis of new 4-isopropylthiazole hydrazide analogs and some derived clubbed triazole, oxadiazole ring systems - A novel class of potential antibacterial, antifungal and antitubercular agents. In: European Journal of Medicinal Chemistry, 44 (11). pp. 4739-4746.

Malshetty, Vidyasagar and Kurthkoti, Krishna and China, Arnab and Mallick, Bratati and Yamunadevi, Subburaj and Sang, Pau Biak and Srinivasan, Narayanaswamy and Nagaraja, Valakunja and Varshney, Umesh (2010) Novel insertion and deletion mutants of RpoB that render Mycobacterium smegmatis RNA polymerase resistant to rifampicin-mediated inhibition of transcription. In: Microbiology, 156 (Part 5). pp. 1565-1573.

Mamidi, AS and Surolia, A (2022) Mixed mechanism of conformational selection and induced fit as a molecular recognition process in the calreticulin family of proteins. In: PLoS Computational Biology, 18 (12).

Mamidi, Ashalatha Sreshty and Arora, Prerna and Surolia, Avadhesha (2015) Multivariate PLS Modeling of Apicomplexan FabD-Ligand Interaction Space for Mapping Target-Specific Chemical Space and Pharmacophore Fingerprints. In: PLOS ONE, 10 (11).

Mamidi, Ashalatha Sreshty and Ray, Ananya and Surolia, Namita (2019) Structural Analysis of PfSec62-Autophagy Interacting Motifs (AIM) and PfAtg8 Interactions for Its Implications in RecovER-phagy in Plasmodium falciparum. In: FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 7 .

Mamidi, Ashalatha Sreshty and Surolia, Avadhesha (2015) Exploring conformational dynamics of biomolecular recognition via hierarchical sampling approach. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). p. 31.

Mamidi, Ashalatha Sreshty and Surolia, Avadhesha (2015) Hierarchical sampling for metastable conformers determines biomolecular recognition: the case of malectin and diglucosylated N-glycan interactions. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (6). pp. 1363-1384.

Manda, S and Michael, D and Jadhao, S and Nagaraj, SH (2018) Functional enrichment analysis. [Book Chapter]

Mandal, Amit Kumar and Ramasam, Mani Ramakrishnan Santhana and Sabareesh, Varatharajan and Openshaw, Matthew E and Krishnan, Kozhalmannom S and Balaram, Padmanabhan (2007) Sequencing of T-superfamily conotoxins from Conus virgo: Pyroglutamic acid identification and disulfide arrangement by MALDI mass spectrometry. In: Journal of the American Society for Mass Spectrometry, 18 (8). 1396-.

Mandal, Amit Kumar and Balaram, Padmanabhan (2007) Mass spectrometric identification of pyroglutamic acid in peptides following selective hydrolysis. In: Analytical Biochemistry, 370 (1). pp. 118-120.

Mandal, Amit Kumar and Woodi, Murall and Sood, Varun and Krishnaswamy, Patnam Rajagopalan and Rao, Anjah and Ballal, Sudarshan and Balaram, Padmanabhan (2007) Quantitation and characterization of glutathionyl haemoglobin as an oxidative stress marker in chronic renal failure by mass spectrometry. In: Clinical Biochemistry, 40 (13-14). pp. 986-994.

Mandal, Chitra and Biswas, Margaret and Nagpurkar, Arun and Mookerje, Sailen (1991) Isolation of a phosphoryl choline-binding protein from the hemolymph of the snail, Achatina fulica. In: Developmental & Comparative Immunology, 15 (4). pp. 227-239.

Mandal, Soumit S and Navratna, Vikas and Sharma, Pratyush and Gopal, B and Bhattacharyya, Aninda J (2014) Titania nanotube-modified screen printed carbon electrodes enhance the sensitivity in the electrochemical detection of proteins. In: BIOELECTROCHEMISTRY, 98 . pp. 46-52.

Mande, SC and Suguna, K (1989) A fast algorithm for macromolecular packing calculation. In: Journal of applied crystallography, 22 . pp. 627-629.

Mande, SC and Raghunathan, S and Salunke, DM and Khan, MI and Swamy, MJ and Surolia, A and Vijayan, M (1988) Structural studies on peanut lectin. In: Indian Journal of Biochemistry & Biophysics, 25 (1-2). pp. 166-171.

Mangala Prasad, V and Blijleven, JS and Smit, JM and Lee, KK (2022) Visualization of conformational changes and membrane remodeling leading to genome delivery by viral class-II fusion machinery. In: Nature Communications, 13 (1).

Manglani, Kapil and Vijayan, Viji and Pathak, Chandramani and Khandelwal, Mayuri and Singh, Parminder and Chellappa, Stalin and Yadav, Vijay K and Surolia, Avadhesha and Gupta, Sarika (2019) Development and characterization of supramolecular calcitonin assembly and assessment of its interactions with the bone remodelling process. In: BONE, 122 . pp. 123-135.

Mani, A and Ramasamy, P and Prabhu, AAM and Rajendiran, N (2023) Investigation of Ag and Ag/Co bimetallic nanoparticles with naproxen-cyclodextrin inclusion complex. In: Journal of Molecular Structure, 1284 .

Mani, A and Ramasamy, P and Prabhu, AAM and Senthilraja, P and Rajendiran, N (2024) Synthesis and characterization of Ag/Co/chloroquine/cyclodextrin inclusion complex nanomaterials. In: Journal of Sol-Gel Science and Technology .

Mani, Nandini and Bhandari, Spraha and Moreno, Rodolfo and Hu, Liya and Prasad, Venkataram BV and Suguna, Kaza (2016) Multiple oligomeric structures of a bacterial small heat shock protein. In: SCIENTIFIC REPORTS, 6 .

Mani, Nandini and Ramakrishna, Krishnaveni and Suguna, Kaza (2015) Characterization of rice small heat shock proteins targeted to different cellular organelles. In: CELL STRESS & CHAPERONES, 20 (3). pp. 451-460.

Manikandan, P and Nadig, K and Singh, M (2023) Large-scale Purification of Type III Toxin-antitoxin Ribonucleoprotein Complex and its Components from Escherichia coli for Biophysical Studies. In: Bio-protocol, 13 (13).

Manikandan, P and Sandhya, S and Nadig, K and Paul, S and Srinivasan, N and Rothweiler, U and Singh, M (2022) Identification, functional characterization, assembly and structure of ToxIN type III toxin-antitoxin complex from E. coli. In: Nucleic acids research, 50 (3). pp. 1687-1700.

Manjula, G and Ramakrishnan, C (1979) Stereo chemical studies on cyclic-peptides .10. Conformational-analysis of hydrogen-boned cyclic pentapeptides. In: International Journal of Peptide & Protein Research, 13 (3). pp. 353-362.

Manjula, G and Ramakrishnan, C (1979) Stereochemical Studies on Cyclic Peptides. IX. Conformational Studies on Cyclic Tetrapeptides Containing Alternating cis and trans Peptide Units. In: Biopolymers, 18 (3). pp. 591-607.

Manjula, G and Ramakrishnan, C and Sarathy, KP (1977) Sterochemical studies on cyclic peptides-VIII. Conformational analysis of hydrogen bonded cyclohexaglycyl molecule with a centre of inversion symmetry. In: Proceedings of the Indian Academy of Sciences Section A, 86 (5). pp. 443-454.

Manoj, N and Jeyaprakash, Arockia A and Pratap, JV and Komath, Sneha Sudha and Kenoth, Roopa and Swamy, Musti J and Vijayan, M (2001) Crystallization and preliminary X-ray studies of snake gourd lectin: homology with type II ribosome-inactivating proteins. In: Acta Crystallographica Section D, 57 . pp. 912-914.

Manoj, N and Srinivas, VR and Satish, B and Singha, Netai C and Suguna, K (1999) Crystallization and preliminary crystallographic analysis of winged bean acidic lectin. In: Acta Crystallographica Section D Biological Crystallography, 55 (2). pp. 564-565.

Manoj, N and Srinivas, VR and Suguna, K (1999) Structure of basic winged-bean lectin and a comparison with its saccharide-bound form. In: Acta Crystallographica Section D, 55 (part 4). 794-800 .

Manoj, N and Srinivas, VR and Surolia, A and Vijayan, M and Suguna, K (2000) Carbohydrate Specificity and Salt-bridge Mediated Conformational Change in Acidic Winged Bean Agglutinin. In: Journal of Molecular Biology, 302 (5). pp. 1129-1137.

Manoj, N and Vijayan, M (2000) X-ray studies on crystalline complexes involving amino acids and peptides. XXXVI. Crystal structures of hydrated glycyl-L-histidine andL-histidyl-L-alanine complexes with oxalic acid. In: Journal of Peptide Research, 56 (4). pp. 210-217.

Mantelingu, K and Reddy, Ashok BA and Swaminathan, V and Kishore, Hari A and Siddappa, Nagadenahalli B and Kumar, Pavan GV and Nagashankar, G and Natesh, Nagashayana and Roy, Siddhartha and Sadhale, Parag P and Ranga, Udaykumar and Narayana, Chandrabhas and Kundu, Tapas K (2007) Specific Inhibition of p300-HAT Alters Global Gene Expression and Represses HIV Replication. In: Chemistry & Biology, 14 (6). pp. 645-657.

Marathe, Arvind and Bansal, Manju (2010) The 5-Methyl Group in Thymine Dynamically Influences the Structure of A-Tracts in DNA at the Local and Global Level. In: Journal of Physical Chemistry B, 114 (16). pp. 5534-5546.

Marathe, Arvind and Bansal, Manju (2011) Intrinsic structural variability of DNA allows multiple genomic encoding for nucleosomes Comment on ``Cracking the chromatin code: Precise rule of nucleosome positioning'' by EN Trifonov. In: Physics of Life Reviews, 8 (1). pp. 67-68.

Marathe, Arvind and Bansal, Manju (2009) Structural Polymorphism of the Nucleosomal DNA and Implications for Protein Binding. In: Journal of Biomolecular Structure & Dynamics, 26 (6). pp. 925-926.

Marathe, Arvind and Bansal, Manju (2011) An ensemble of B-DNA dinucleotide geometries lead to characteristic nucleosomal DNA structure and provide plasticity required for gene expression. In: BMC STRUCTURAL BIOLOGY, 11 .

Marathe, Arvind and Karandur, Deepti and Bansal, Manju (2009) Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs. In: BMC Structural Biology, 9 (24).

Marrleisy, D and Lahiri, K and Balaram, P (1985) Bilirubin binding to polypeptides and chiral amines. Induced circular dichroism and fluorescence studies. In: International Journal of Peptide and Protein Research, 25 (3). 290 -296.

Martin, Juliette and Anamika, Krishanpal and Srinivasan, Narayanaswamy (2010) Classification of Protein Kinases on the Basis of Both Kinase and Non-Kinase Regions. In: PLos One, 5 (9).

Marvin, DA and Nave, C and Bansal, M and Hale, RD and Salje, EKH (1992) Two forms of PF1 INOVIRUS: X-ray diffraction studies on a structural phase transition and a calculated libration normal mode of the assymetric unit. In: Phase Transitions, 39 (1-4). pp. 45-80.

Marvin, DA and Nave, C and Bansal, M and Hale, RD and Salje, EKH (1992) Two forms of Pf1 Inovirus: X-ray diffraction studies on a structural phase transition and a calculated libration normal mode of the asymmetric unit. In: Phase Transitions: A Multinational Journal, 39 (1-4). 45-80 .

Mathesan, Santhosh and Tripathy, Madhusmita and Srivastava, Anand and Ghosh, Pijush (2018) Non-affine deformation of free volume during strain dependent diffusion in polymer thin films. In: POLYMER, 155 . pp. 177-186.

Mathew, Renjith and Ramakanth, Madhugiri and Chatterji, Dipankar (2005) Deletion of the Gene rpoZ, Encoding the \omega Subunit of RNA Polymerase, in Mycobacterium smegmatis Results in Fragmentation of the \beta ' Subunit in the Enzyme Assembly. In: Journal of Bacteriology, 187 (18). pp. 6565-6570.

Mathew, Ritta and Kruthiventi, Anil K and Prasad, Jalli V and Kumar, Sadula P and Srinu, Garlapati and Chatterji, Dipankar (2010) Inhibition of Mycobacterial Growth by Plumbagin Derivatives. In: Chemical Biology & Drug Design, 76 (1). pp. 34-42.

Mathew, MK and Balaram, P (1983) Alamethicin and related membrane channel forming polypeptides. In: Molecular and Cellular Biochemistry, 50 (1). pp. 47-64.

Mathew, MK and Balaram, P (1980) A Reinvestigation of Chlortetracycline Fluorescence: Effect of pH, Metal Ions, and Environment. In: Journal of Inorganic Biochemistry, 13 (4). pp. 339-346.

Mathew, MK and Balaram, P (1980) Unmasking of Tyrosyl Fluorescence in Serum Albumins on Bilirubin Binding. In: FEBS Letters, 115 (1). pp. 91-94.

Mathew, MK and Balaram, P (1983) A helix dipole model for alamethicin and related transmembrane channels. In: FEBS Letters, 157 (1). pp. 1-5.

Mathew, MK and Nagaraj, R and Balaram, P (1981) Fluorescent alamethicin fragments A study of membrane activity and aqueous phase aggregation. In: Biochimica et Biophysica Acta (BBA) - Biomembranes, 649 (2). pp. 336-342.

Mathew, MK and Nagarajan, R and Balaram, P (1981) Alamethicin and synthetic peptide fragments as uncouplers of mitochondrial oxidative phosphorylation. Effect of chain length and change. In: Biochemical and Biophysical Research Communications, 98 (2). pp. 548-555.

Mathew, MK and Nagarajan, R and Balaram, P (1982) Ionophore-mediated transmembrane movement of divalent cations in small unilamellar liposomes: An evaluation of the chlortetracycline fluorescence technique and correlations with black lipid membrane studies. In: Journal of Membrane Biology, 65 (1-2). pp. 13-17.

Mathew, MK and Ravi, A and Balaram, P (1981) Disulfide luminescence. Emission characteristics of cyclic tetrapeptide disulfides. In: Biochemical and Biophysical Research Communications, 103 (2). pp. 498-504.

Mathew, MK and Shivaji, S and Balaram, P (1981) Transmembrane calcium fluxes in hamster sperm. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 95.

Mathew, Mathew K and Nagaraj, Ramakrishnan and Balaram, Padmanabhan (1982) Membrane Channel-forming Polypeptides. Aqueous Phase Aggregation and Membrane-Modifying Activity of Synthetic Fluorescent Alamethicin Fragments. In: Journal of Biological Chemistry, 257 (5). pp. 2170-2176.

Mathew, R and Ramakanth, M and Chatterji, Dipankar (2005) Deletion of the gene rpoz, encoding the omega subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the beta ' subunit in the enzyme assembly (vol 187, pg 6565, 2005). In: Journal of Bacteriology, 187 (21). p. 7547.

Mathew, Renjith and Chatterji, Dipankar (2006) The evolving story of the omega subunit of bacterial RNA polymerase. In: Trends in Microbiology, 14 (10). pp. 450-455.

Mathew, Renjith and Mukherjee, Raju and Radhakrishnan, Balachandar and Chatterji, Dipankar (2006) Deletion of the rpoZ gene, encoding the ${\omega}$ subunit of RNA polymerase,results in pleiotropic surface related phenotypes in Mycobacterium smegmatis. In: Microbiology, 152 (6). pp. 1741-1750.

Mathew, Renjith and Ojha, AK and Karande, AA and Chatterji, Dipankar (2004) Deletion of the rel gene in Mycobacterium smegmatis reduces its stationary phase survival without altering the cell-surface associated properties. In: Current Science, 86 (1). pp. 149-153.

Mathiharan, Yamuna Kalyani and Murthy, M R N (2018) Molecular dynamics studies on the domain swapped Salmonella typhimurium survival protein SurE: insights on the possible reasons for catalytic cooperativity. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 36 (9). pp. 2303-2311.

Mathiharan, Yamuna Kalyani and Pappachan, Anju and Savithri, HS and Murthy, Mathur RN (2013) Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium. In: PLOS ONE, 8 (2).

Mathiharan, Yamuna Kalyani and Savithri, HS and Murthy, MRN (2015) Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (9). pp. 1812-1823.

Mathur, C and Jimsheena, VK and Banerjee, S and Makinen, K and Gowda, LR and Savithri, HS (2012) Functional regulation of PVBV Nuclear Inclusion protein-a protease activity upon interaction with Viral Protein genome-linked and phosphorylation. In: Virology, 422 (2). pp. 254-264.

Matsuda, Tsukasa and Kabat, Elvin A and Surolia, Avadhesha (1989) Carbohydrate binding specificity of the basic lectin from winged bean (Psophocarpus tetragonolobus). In: Molecular Immunology, 26 (2). pp. 189-195.

Maulik, A and Bandopadhyay, D and Singh, M (2023) A cytosine-patch sequence motif identified in the conserved region of lincRNA-p21 interacts with the KH3 domain of hnRNPK. In: Current Research in Structural Biology, 5 .

Maulik, Aditi and Giri, Malyasree and Singh, Mahavir (2019) Molecular determinants of complex formation between DNA and the AT-rich interaction domain of BAF250a. In: FEBS LETTERS, 593 (19). pp. 2716-2729.

Meenakshi S, I and Rao, M and Mayor, S and Sowdhamini, R (2023) A census of actin-associated proteins in humans. In: Frontiers in Cell and Developmental Biology, 11 .

Meera, G and Ramesh, N and Brahmachari, Samir K (1989) Zintrons in rat \alpha-lactalbumin gene. In: FEBS Letters, 251 (1-2). pp. 245-249.

Mehrotra, Prachi and Ami, Vimla Kany G and Srinivasan, Narayanaswamy (2018) Clustering of multi-domain protein sequences. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 86 (7). pp. 759-776.

Mehrotra, Prachi and Bhaskara, Ramachandra M and Gnanavel, Mutharasu and Rakshambikai, Ramaswamy and Martin, Juliette and Srinivasan, Narayanaswamy (2015) Classification of protein sequences with special references to multi-domain systems. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). p. 110.

Mehrotra, Prachi and Ramakrishnan, Gayatri and Dhandapani, Gunasekaran and Srinivasan, Narayanaswamy and Madanan, Madathiparambil G (2017) Comparison of Leptospira interrogans and Leptospira biflexa genomes: analysis of potential leptospiral-host interactions. In: MOLECULAR BIOSYSTEMS, 13 (5). pp. 883-891.

Mehrotra, Sonali and Mylarappa, BN and Iyengar, Prathima and Balaram, Hemalatha (2010) Studies on active site mutants of P-falciparum adenylosuccinate synthetase: Insights into enzyme catalysis and activation. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1804 (10). pp. 1996-2002.

Mehta, BK and Verma, Manjul and Jafri, Mustazi and Neogi, Rupak and Desiraju, Shrilakshmi (2003) Triterpenoids from the stembark of Pyrus communis. In: Natural Product Research, 17 (6). pp. 459-463.

Mehta, A and Raj, P and Sundriyal, S and Gopal, B and Varshney, U (2021) Use of a molecular beacon based fluorescent method for assaying uracil DNA glycosylase (Ung) activity and inhibitor screening. In: Biochemistry and Biophysics Reports, 26 .

Menon, Saija C and Singh, Harkesh B and Patel, Rajan P and Das, Kalyan and Butcher, Ray J (1997) Synthesis and reactivity of chiral tellurium azomethines: Pseudopolymorphism of [o-((((1S,2R)-2-hydroxy-2-phenyl-1-methylethyl)amino)methinyl)phenyl] tellurium(IV) bromide. In: Organometallics, 16 (4). pp. 563-571.

Metri, Rahul and Hariharaputran, Sridhar and Ramakrishnan, Gayatri and Anand, Praveen and Raghavender, Upadhyayula S and Ochoa-Montano, Bernardo and Higueruelo, Alicia P and Sowdhamini, Ramanathan and Chandra, Nagasuma R and Blundell, Tom L and Srinivasan, Narayanaswamy (2015) SInCRe-structural interactome computational resource for Mycobacterium tuberculosis. In: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION .

Metri, V and Ghatak, S and Raha, S and Sikdar, SK (2019) Patch clamp data driven stochastic modeling and simulation of hTREK1 potassium ion channel gating. In: Chemical Physics, 516 . pp. 182-190.

Minie, Mark and Chopra, Gaurav and Sethi, Geetika and Horst, Jeremy and White, George and Roy, Ambrish and Hatti, Kaushik and Samudrala, Ram (2014) CANDO and the infinite drug discovery frontier. In: DRUG DISCOVERY TODAY, 19 (9). pp. 1353-1363.

Mishra, Akhilesh and Siwach, Priyanka and Misra, Pallavi and Jayaram, Bhyravabhotla and Bansa, Manju and Olson, Wilma K and Thayer, Kelly M and Beveridge, David L (2018) Toward a Universal Structural and Energetic Model for Prokaryotic Promoters. In: BIOPHYSICAL JOURNAL, 115 (7). pp. 1180-1189.

Mishra, Archita and Mamidi, Ashalatha S and Rajmani, Raju S and Ray, Ananya and Roy, Rajanya and Surolia, Avadhesha (2018) An allosteric inhibitor of Mycobacterium tuberculosis ArgJ: Implications to a novel combinatorial therapy. In: EMBO MOLECULAR MEDICINE, 10 (4).

Mishra, Archita and Surolia, Avadhesha (2017) Biochemical characterization of argininosuccinate lyase from M-tuberculosis: significance of a c-terminal cysteine in catalysis and thermal stability. In: IUBMB LIFE, 69 (11). pp. 896-907.

Mishra, Archita and Surolia, Avadhesha (2018) Mycobacterium tuberculosis: Surviving and Indulging in an Unwelcoming Host. In: IUBMB LIFE, 70 (9, SI). pp. 917-925.

Mishra, D and Pahujani, S and Mitra, N and Srivastava, A and Srinivasan, R (2021) Identification of a Potential Membrane-Targeting Sequence in the C-Terminus of the F Plasmid Segregation Protein SopA. In: Journal of Membrane Biology . (In Press)

Mishra, Neha and Lata, Sonam and Deshmukh, Priyanka and Kamat, Kajal and Surolia, Avadhesha and Banerjee, Tanushree (2018) Insulin signaling pathway protects neuronal cell lines by Sirt3 mediated IRS2 activation. In: BIOFACTORS, 44 (3). pp. 224-236.

Mishra, P and Narayanan, R (2022) Conjunctive changes in multiple ion channels mediate activity-dependent intrinsic plasticity in hippocampal granule cells. In: iScience, 25 (3).

Mishra, P and Narayanan, R (2020) Heterogeneities in intrinsic excitability and frequency-dependent response properties of granule cells across the blades of the rat dentate gyrus. In: Journal of Neurophysiology, 123 (2). pp. 755-772.

Mishra, P and Narayanan, R (2021) Ion-channel degeneracy: Multiple ion channels heterogeneously regulate intrinsic physiology of rat hippocampal granule cells. In: Physiological Reports, 9 (15).

Mishra, P and Narayanan, R (2021) Stable continual learning through structured multiscale plasticity manifolds. In: Current Opinion in Neurobiology, 70 . pp. 51-63.

Mishra, P and Narayanan, c (2023) The enigmatic HCN channels: A cellular neurophysiology perspective. In: Proteins: Structure, Function and Bioinformatics .

Mishra, Poonam and Narayanan, Rishikesh (2019) Disparate forms of heterogeneities and interactions among them drive channel decorrelation in the dentate gyrus: Degeneracy and dominance. In: HIPPOCAMPUS, 29 (4). pp. 378-403.

Mishra, Poonam and Narayanan, Rishikesh (2015) High-conductance states and A-type K+ channels are potential regulators of the conductance-current balance triggered by HCN channels. In: JOURNAL OF NEUROPHYSIOLOGY, 113 (1). pp. 23-43.

Mishra, RK and Brahmachari, SK (1988) Synthesis of a novel polynucleotide: Potential R-L model. In: Current Science (Bangalore), 57 (11). pp. 574-577.

Mishra, Rakesh K and Latha, PK and Brahmachari, Samir K (1988) Interruptions of (CG)n sequences by GG, TG and CA need not prevent B to Z transition in solution. In: Nucleic Acids Research, 16 (10). pp. 4651-4665.

Mishra, S (2023) Emerging Trends in Cryo-EM-based Structural Studies of Neuropathological Amyloids. In: Journal of Molecular Biology, 435 (24).

Mishra, S and Kundu, N and Pramanick, I and Kumar, A and Chattopadhyay, K and Dutta, S (2022) Structural insights into thermostable direct hemolysin of Vibrio parahaemolyticus using single-particle cryo-EM. In: Proteins: Structure, Function and Bioinformatics .

Mishra, S and Roy, A and Chatterjee, A and Dutta, S (2024) Membrane Rupture and Lipidâ��Protein Interaction of Î³-Hemolysin from Staphylococcus aureus Using Cryo-EM. [Book Chapter]

Mishra, S and Roy, A and Dutta, S (2023) Cryo-EM-based structural insights into supramolecular assemblies of γ-hemolysin from S. aureus reveal the pore formation mechanism. In: Structure, 31 (6). 651-667.e5.

Mishra, Satyendra and Karmodiya, Krishanpal and Parasuraman, Prasanna and Surolia, Avadhesha and Surolia, Namita (2008) Design, synthesis, and application of novel triclosan prodrugs as potential antimalarial and antibacterial agents. In: Bioorganic & Medicinal Chemistry, 16 (10). pp. 5536-5546.

Mishra, Satyendra and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2008) Synthesis and exploration of novel curcumin analogues as anti-malarial agents. In: Bioorganic & Medicinal Chemistry, 16 (6). pp. 2894-2902.

Mishra, Saurabh and Shukla, Prashant and Bhaskar, Ashima and Anand, Kushi and Baloni, Priyanka and Jha, Rajiv Kumar and Mohan, Abhilash and Rajmani, Raju S and Nagaraja, Valakunja and Chandra, Nagasuma and Singh, Amit (2017) Efficacy of beta-lactam/beta-lactamase inhibitor combination is linked to WhiB4-mediated changes in redox physiology of Mycobacterium tuberculosis. In: ELIFE, 6 .

Misquith, S and Rani, PG and Surolia, Avadhesha (1994) Carbohydrate binding specificity of the B-cell maturation mitogen from Artocarpus integrifolia seeds. In: Journal of Biological Chemistry, 269 (48). pp. 30393-30401.

Misquith, S and Surolia, A and Shankar, SK (1996) Modulating effect of gelonin gp330 conjugate on Heymann's nephritis induced in rats - A pathomorphological evaluation. In: Current Science (Bangalore), 70 (12). pp. 1080-1084.

Misquith, Sandra and Surolia, Avadhesha (1995) In vivo treatment of Heymann's Nephritis using a cytotoxic protein-toxin conjugate. In: FEBS letters, 373 (2). pp. 151-154.

Misquith, Sandra and Surolia, Avadhesha (1995) In vivo treatment of Heymann's Nephritis using a cytotoxic protein-toxin conjugate. In: FEBS Letters, 373 (2). pp. 151-154.

Misra, A and Surolia, N and Surolia, A (2007) Unveiling the unusual acylation behavior of type II fatty acid biosynthesis acyl carrier proteins. In: FEBS Journal, 274 (s1). 221 -244.

Misra, Ashish and Sharma, Shailendra Kumar and Surolia, Namita and Surolia, Avadhesha (2007) Self-acylation properties of type II fatty acid biosynthesis acyl carrier protein. In: Chemistry & Biology, 14 (7). 775 -783.

Misra, Ashish and Surolia, Namita and Surolia, Avadhesha (2009) Catalysis and mechanism of malonyl transferase activity in type II fatty acid biosynthesis acyl carrier proteins. In: Molecular BioSystems, 5 (6). pp. 651-659.

Misra, Ashish and Surolia, Namita and Surolia, Avadhesha (2009) Evolutionary Significance of Self-acylation Property in Acyl Carrier Proteins. In: IUBMB Life, 61 (8). pp. 853-859.

Misra, Neeraj and Siddiqui, Shamoon Ahmad and Srivastava, Ruby and Pandey, Anoop Kumar and Jain, Sudha (2010) Vibrational analysis of boldine hydrochloride using QM/MM approach. In: Spectroscopy: An International Journal, 24 (5). pp. 483-499.

Mitra, Alok K and Chandrasekaran, R (1977) Conformational analysis of cyclo (l-cystine. In: International Journal of Peptide and Protein Research, 10 (3). 235 -239.

Mitra, Jay Ati and Ramakrishnan, C (2009) Studies On Hydrogen Bonds: Part IV. Proposed Working Criteria for Assessing Qualitative Strength of Hydrogen Bonds. In: International Journal of Peptide and Protein Research, 17 (4). 401 - 411.

Mitra, Ashima and Chakrabarti, Kalyan Sundar and Hameed, Shahul MS and Srinivas, Kalyan V and Kumar, Ganesan Senthil and Sarma, Siddhartha P (2005) High level expression of peptides and proteins using cytochrome $b_5$ as a fusion host. In: Protein Expression and Purification, 41 (1). pp. 84-97.

Mitra, Ashima and Sarma, Siddhartha P (2008) Escherichia coli ilvN Interacts with the FAD Binding Domain of ilvB and Activates the AHAS I Enzyme. In: Biochemistry, 47 (6). pp. 1518-1521.

Mitra, J and Ramakrishnan, C (1981) Studies on hydrogen-bonds .4. proposed working criteria for assessing qualitative strength of hydrogen-bonds. In: International Journal of Peptide and Protein Research, 17 (4). pp. 401-411.

Mitra, N and Surolia, I and Sharon, N and Surolia, A (2002) Role of glycosylation in modulating folding behaviour of a glycoprotein lectin from erythrina corallodendron. In: Glycobiology, 12 (10). p. 700.

Mitra, Nivedita and Sharon, Nathan and Surolia, Avadhesha (2003) Role of N-Linked Glycan in the Unfolding Pathway of Erythrina corallodendron Lectin. In: Biochemistry, 42 (42). pp. 12208-12216.

Mitra, Nivedita and Sinha, Sharmistha and Kini, Manjunatha R and Surolia, Avadhesha (2005) Analysis of the peanut agglutinin molten globule-like intermediate by limited proteolysis. In: Biochimica et Biophysica Acta(BBA) - General Subjects, 1725 (3). pp. 283-289.

Mitra, Nivedita and Sinha, Sharmistha and Ramya, Thirumalai NC and Surolia, Avadhesha (2006) N-linked oligosaccharides as outfitters for glycoprotein folding, form and function. In: Trends in Biochemical Sciences, 31 (3). pp. 156-163.

Mitra, Nivedita and Srinivas, VR and Ramya, TNC and Ahmad, Nisar and Reddy, Bhanuprakash G and Surolia, Avadhesha (2002) Conformational Stability of Legume Lectins Reflect Their Different Modes of Quaternary Association: Solvent Denaturation Studies on Concanavalin A and Winged Bean Acidic Agglutinin. In: Biochemistry, 41 (29). 9256 - 9263.

Mittal, Anshumali and Shakya, Binita (2018) Synthesis and purification of linkage-specific polyubiquitin chains of distinct length for structural studies. In: ANALYTICAL BIOCHEMISTRY, 559 . pp. 1-4.

Mittal, B and Kurup, CK (1980) Effect if clofibrate on growth and mitochondrial oxidative-phosphprylation in regenerating rat-liver. In: Indian Journal of Biochemistry & Biophysics, 17 (4). pp. 290-293.

Mittal, D and Narayanan, R (2024) Network motifs in cellular neurophysiology. In: Trends in Neurosciences, 47 (7). pp. 506-521.

Mittal, D and Narayanan, R (2021) Resonating neurons stabilize heterogeneous grid-cell networks. In: eLife, 10 .

Mittal, Divyansh and Narayanan, Rishikesh (2018) Degeneracy in the robust expression of spectral selectivity, subthreshold oscillations, and intrinsic excitability of entorhinal stellate cells. In: JOURNAL OF NEUROPHYSIOLOGY, 120 (2). pp. 576-600.

Mittal, N and Kumar, S and Rajmani, RS and Singh, R and Lemoine, C and Jakob, V and Bj, S and Jagannath, N and Bhat, M and Chakraborty, D and Pandey, S and Jory, A and Sa, SS and Kleanthous, H and Dubois, P and Ringe, RP and Varadarajan, R (2023) Enhanced protective efficacy of a thermostable RBD-S2 vaccine formulation against SARS-CoV-2 and its variants. In: npj Vaccines, 8 (1).

Mittal, N and Sengupta, N and Malladi, SK and Reddy, P and Bhat, M and Rajmani, RS and Sedeyn, K and Saelens, X and Dutta, S and Varadarajan, R (2021) Protective efficacy of recombinant influenza hemagglutinin ectodomain fusions. In: Viruses, 13 (9).

Mizutani, Hisashi and Saraboji, K and Sony, Malathy SM and Ponnuswamy, MN (2008) Systematic study on crystal-contact engineering of diphthine synthase: influence of mutations at crystal-packing regions on X-ray diffraction quality. In: Acta Crystallographica Section D, 64 . pp. 1020-1033.

Modak, Rahul and Basha, Jeelan and Bharathy, Narendra and Maity, Koustav and Mizar, Pushpak and Bhat, Akshay V and Vasudevan, Madavan and Rao, Vinay Kumar and Kok, Wai Kay and Natesh, Nagashayana and Taneja, Reshma and Kundu, Tapas K (2013) Probing p300/CBP associated Factor (PCAF)-dependent pathways with a small molecule inhibitor. In: ACS Chemical Biology, 8 (6). pp. 1311-1323.

Modak, Rahul and Sinha, Sharmistha and Surolia, Namita (2007) Isothermal unfolding studies on the apo and holo forms of Plasmodium falciparum acyl carrier protein. In: FEBS Journal, 274 (13). pp. 3313-3326.

Mohan, CG and Mishra, PC (2000) Molecular structure-activity relationship study of some non-steroidal antiinflammatory agents using electrostatic potential mapping. In: Indian Journal of Biochemistry & Biophysics, 37 (4). pp. 268-272.

Mohan, MK and Abraham, N and Rajesh, RP and Jayaseelan, BF and Ragnarsson, L and Lewis, RJ and Sarma, SP (2020) Structure and allosteric activity of a single-disulfide conopeptide from Conus zonatus at human α3β4 and α7 nicotinic acetylcholine receptors. In: Journal of Biological Chemistry, 295 (20). pp. 7096-7112.

Mohanakrishnan, P and Easwaran, KRK (1979) Conformational Dependence of Vicinal $^{13}C^{\prime}NC^{\alpha} H$ Coupling Constants in Peptides: A Dirac Cector Model Investigation. In: Biopolymers, 18 (7). pp. 1769-1774.

Mohanakrishnan, P and Easwaran, KRK (1979) Psi-angle dependence of geminal proton–carbonyl-13C coupling constants in peptides. A theoretical investigation†. In: Organic Magnetic Resonance, 12 (4). pp. 196-198.

Mohanakrishnan, P and Easwaran, KRK (1986) Theoretical investigations of the two-bond proton-carbon-13 coupling constants. Angular variations of the couplings involving carboxyl carbon. In: Chemical Physics, 104 (3). 409 -414.

Mohankrishnan, P (1987) A Penney-Dirac bond order study of the geminal proton-carbon-13 coupling constants in unsaturated systems. In: Journal of Molecular Structure (Theochem), 149 (3-4). pp. 177-184.

Mohanty, D and Bansal, M (1995) Chain folding and A:T pairing in human telomeric DNA: a model-building and molecular dynamics study. In: Biophysical Journal, 69 (3). pp. 1046-1067.

Mohanty, D and Bansal, M (1991) DNA polymorphism and local variation in base-pair orientation: a theoretical rationale. In: Journal of Biomolecular Structure & Dynamics, 9 (1). pp. 127-142.

Mohanty, D and Bansal, Manju (1993) Conformational Polymorphism in G-tetraplex Structures: Strand Reversal by Base Flipover or Sugar Flipover. In: Nucleic Acids Research, 21 (8). pp. 1767-1774.

Mohanty, Debasisa and Bansal, Manju (1993) Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover. In: Nucleic Acids Research, 21 (8). pp. 1767-1774.

Mohanty, Debasisa and Bansal, Manju (1994) Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Pairing in d(G4TnG4),. In: Biopolymers, 34 (9). pp. 1187-1211.

Mohanty, Smita and Purwar, Mansi and Srinivasan, Naryanaswamy and Rekha, Nambudiry (2013) Tethering preferences of domain families co-occurring in multi-domain proteins. In: Molecular BioSystems, 9 (7). pp. 1708-1725.

Mohanty, Smita and Srinivasan, N (2009) How Effective Is The Data On Co-Occurrence Of Domains In Multi-Domain Proteins In Prediction Of Protein-Protein Interactions? In: 7th IEEE International Workshop on Genomic Signal Processing and Statistics, MAY 17-19, 2009, Minneapolis.

Moi, S and Shekh, S and Dolle, A and Vijayasarathy, M and Gowd, KH (2022) Significance of D- tryptophan in Contryphan-Ar1131 Conus peptide: Oxidative folding, trypsin binding, and photostabilization activity. In: Peptides, 156 .

Mondal, Kajari and VijayRaghavan, K and Varadarajan, Raghavan (2007) Design and Utility of Temperature-Sensitive Gal4 Mutants for Conditional Gene Expression in Drosophila. In: Fly, 1 (5). pp. 282-286.

Mondal, AK and Sengupta, N and Singh, M and Biswas, R and Lata, K and Lahiri, I and Dutta, S and Chattopadhyay, K (2022) Glu289 residue in the pore-forming motif of Vibrio cholerae cytolysin is important for efficient Î²-barrel pore formation. In: Journal of Biological Chemistry, 298 (10).

Mondal, AK and Verma, P and Sengupta, N and Dutta, S and Bhushan Pandit, S and Chattopadhyay, K (2020) Tyrosine in the hinge region of the pore-forming motif regulates oligomeric Î²-barrel pore formation by Vibrio cholerae cytolysin. In: Molecular Microbiology . (In Press)

Mondal, Kajari and Dastidar, Antara Ghosh and Singh, Guramrit and Madhusudhanan, S and Gande, Santosh Lakshmi and VijayRaghavan, K and Varadarajan, Raghavan (2007) Design and Isolation of Temperature-sensitive Mutants of Gal4 in Yeast and Drosophila. In: Journal of Molecular Biology, 370 (5). pp. 939-950.

Mondal, Kalyani and Raghava, Smita and Barua, Bipasha and Varadarajan, Raghavan and Gupta, Munishwar N (2007) Role of Stimuli-Sensitive Polymers in Protein Refolding: \alpha-Amylase and CcdB (Controller of Cell Division or Death B) as Model Proteins. In: Langmuir, 23 (1). pp. 70-75.

Mookkan, M and Kandasamy, S and Al-Odayni, A-B and Abduh, NAY and Srinivasan, S and Revannasidappa, BC and Kumar, V and Chinnasamy, K and Aravindhan, S and Shankar, MK (2023) A Structural and In Silico Investigation of Potential CDC7 Kinase Enzyme Inhibitors. In: ACS Omega, 8 (49). pp. 47187-47200.

Moorthy, AK and Gopal, B and Satish, PR and Bhattacharya, S and Bhattacharya, A and Murthy, MRN and Surolia, A (1999) Thermodynamics of target peptide recognition by calmodulin and a calmodulin analogue: implications for the role of the central linker. In: FEBS-Letters, 461 (1-2). pp. 19-24.

Moorthy, Anu K and Gopal, B and Mohan, Gopi C and Murthy, MRN (1999) Temperature-dependent cell transformation in a calcium-binding protein from Entamoeba histolytica. In: Current Science, 77 (7). pp. 855-856.

Moorthy, Anu K and Murthy, MRN (2001) Conformation and Structural Transitions in the EFHands of Calmodulin. In: Journal of Biomolecular Structure & Dynamics, 19 (1). pp. 47-57.

Moorthy, Anu K and Singh, SK and Gopal, B and Surolia, A and Murthy, MRN (2001) Variability of Calcium Binding to EF-hand Motifs Probed by Electrospray Ionization Mass Spectrometry. In: Journal of the American Society for Mass Spectrometry, 12 (12). pp. 1296-1301.

Moretto, V and Crisma, M and Bonora, GM and Toniolo, C and Balaram, Hemalatha and Balaram, P (1989) Comparison of the Effect of Five Guest Residues on the \beta-Sheet Conformation of Host ${(L-Val)}_n$ Oligopeptides. In: Macromolecules, 22 (7). pp. 2939-2944.

Morey, Czuee and Mookherjee, Sushmita and Rajasekaran, Ganesan and Bansal, Manju (2011) DNA Free Energy-Based Promoter Prediction and Comparative Analysis of Arabidopsis and Rice Genomes. In: Plant Physiology, 156 (3). pp. 1300-1315.

Moses, Prabu M and Suguna, K and Vijayan, M (1999) Variability in quaternary association of proteins with the same tertiary fold: A case study and rationalization involving legume lectins. In: Proteins, 35 (1). pp. 58-69.

Mudgal, Richa and Sandhya, Sankaran and Kumar, Gayatri and Sowdhamini, Ramanathan and Chandra, Nagasuma R and Srinivasan, Narayanaswamy (2015) NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. In: NUCLEIC ACIDS RESEARCH, 43 (D1). D300-D305.

Mudgal, Richa and Sowdhamini, Ramanathan and Chandra, Nagasuma and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2014) Filling-in Void and Sparse Regions in Protein Sequence Space by Protein-Like Artificial Sequences Enables Remarkable Enhancement in Remote Homology Detection Capability. In: JOURNAL OF MOLECULAR BIOLOGY, 426 (4). pp. 962-979.

Mudgal, Richa and Srinivasan, Narayanaswamy and Chandra, Nagasuma (2017) Resolving protein structure-function-binding site relationships from a binding site similarity network perspective. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 85 (7). pp. 1319-1335.

Mukerji, M and Choudhry, S and Saleem, Q and Padma, MV and Maheshwari, MC and Jain, S (2000) Molecular analysis of Friedreich's ataxia locus in the Indian population. In: Acta Neurologica Scandinavica, 102 (4). pp. 227-229.

Mukherjee, Kakoli and Chatterji, Dipankar (1999) Alteration in template recognition by Escherichia coli RNA polymerase lacking the \omega subunit: A mechanistic analysis through gel retardation and foot-printing studies. In: Journal of Biosciences, 24 (4). pp. 453-459.

Mukherjee, Kakoli and Nagai, Hiroki and Shimamoto, Nobuo and Chatterji, Dipankar (1999) GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the \omega subunit in vivo. In: European Journal of Biochemistry, 266 (1). pp. 228-235.

Mukherjee, Raju and Chatterji, Dipankar (2005) Evaluation of the role of sigma B in Mycobacterium smegmatis. In: Biochemical and Biophysical Research Communications, 338 (2). pp. 964-972.

Mukherjee, Raju and Chatterji, Dipankar (2012) Glycopeptidolipids: Immuno-modulators in greasy mycobacterial cell envelope. In: IUBMB Life, 64 (3). pp. 215-225.

Mukherjee, Raju and Chatterji, Dipankar (2008) Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ. In: International Symposium for Biochromatography and Nanotechnologies Vellore Inst Technol, FEB 12-15,, Vellore.

Mukherjee, Raju and Chatterji, Dipankar (2008) Stationary phase induced alterations in mycobacterial RNA polymerase assembly: A cue to its phenotypic resistance towards rifampicin. In: Biochemical and Biophysical Research Communications, 369 (3). pp. 899-904.

Mukherjee, Raju and Gomez, Manuel and Jayaraman, Narayanaswamy and Smith, Issar and Chatterji, Dipankar (2005) Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: structural studies. In: Microbiology, 151 (7). pp. 2385-2392.

Mukherjee, S and Sikdar, SK (2020) Intracellular activation of full-length human TREK-1 channel by hypoxia, high lactate, and low pH denotes polymodal integration by ischemic factors. In: Pflugers Archiv European Journal of Physiology . (In Press)

Mukherjee, Sanchita and Kailasam, Senthilkumar and Bansal, Manju and Bhattacharyya, Dhananjay (2015) Stacking Interactions in RNA and DNA: Roll-Slide Energy Hyperspace for Ten Unique Dinucleotide Steps. In: BIOPOLYMERS, 103 (3). pp. 134-147.

Mukherjee, Sanchita and Kailasam, Senthilkumar and Bansal, Manju and Bhattacharyya, Dhananjay (2014) Energy Hyperspace for Stacking Interaction in AU/AU Dinucleotide Step: Dispersion-Corrected Density Functional Theory Study. In: BIOPOLYMERS, 101 (1). pp. 107-120.

Mukherjee, Saumyak and Deshmukh, Ashish A and Mondal, Sayantan and Gopal, Balasubramanian and Bagchi, Biman (2019) Destabilization of Insulin Hexamer in Water-Ethanol Binary Mixture. In: JOURNAL OF PHYSICAL CHEMISTRY B, 123 (49). pp. 10365-10375.

Mukherjee, Saumyak and Mondal, Sayantan and Deshmukh, Ashish Anilrao and Gopal, Balasubramanian and Bagchi, Biman (2018) What Gives an Insulin Hexamer Its Unique Shape and Stability? Role of Ten Confined Water Molecules. In: JOURNAL OF PHYSICAL CHEMISTRY B, 122 (5). pp. 1631-1637.

Mukherjee, Shayantani and Bansal, Manju and Bhattacharyya, Dhananjay (2006) Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis. In: Journal of Computer-Aided Molecular Design, 20 (10-11). pp. 629-645.

Mukherjee, Somnath and Chatterjee, Jayanta (2016) Suppressing the epimerization of endothioamide peptides during Fmoc/t-Bu-based solid phase peptide synthesis. In: JOURNAL OF PEPTIDE SCIENCE, 22 (11-12). pp. 664-672.

Mukherjee, Somnath and Verma, Hitesh and Chatterjee, Jayanta (2015) Efficient Site-Specific Incorporation of Thioamides into Peptides on a Solid Support. In: ORGANIC LETTERS, 17 (12). pp. 3150-3153.

Mukherjee, Sumanta and Sambarey, Awanti and Prashanthi, Karyala and Chandra, Nagasuma (2013) Current trends in modeling hostpathogen interactions. In: WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY, 3 (2). pp. 109-128.

Mukhi, Pidugu Lakshmi Swarna and Sharma, Shailendra Kumar and Kapoor, Mili and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2004) Crystallization and preliminary crystallographic analysis of $\beta$-hydroxyacyl ACP dehydratase (FabZ) from Plasmodium falciparum. In: Acta Crystallographica Section D: Biological Crystallography, 60 (1). pp. 120-121.

Mukhopadhyay, Chaitali and Rao, VSR (1989) Computer modelling approach to study the modes of binding of alpha- and beta-anomers of D-galactose, D-fucose and D-glucose to L-arabinose-binding protein. In: International Journal of Biological Macromolecules, 11 (4). pp. 194-200.

Mukunda, L Chinmayee and Narayanan, Rishikesh (2017) Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. In: JOURNAL OF PHYSIOLOGY-LONDON, 595 (8). pp. 2611-2637.

Muniyappa, K and Ganesh, N and Guhan, N and Singh, Pawan and Manjunath, GP and Datta, S and Chandra, Nagasuma R and Vijayan, M (2004) Homologous recombination in mycobacteria. In: Current Science, 86 (1). pp. 141-148.

Munshi, SK and Murthy, MRN (1986) Strategies for collecting screen-less oscillation data. In: Journal of Applied Crystallography, 19 . pp. 61-62.

Munshi, Sanjeev K and Hiremath, Chaitanya N and Murthy, Mathur RN and Savithri, HS (1987) Symmetry of belladonna mottle virus: rotation function studies. In: Acta Crystallographica Section B, 43 (4). pp. 376-382.

Munshi, Sneha and Subramanian, Sandhyaa and Ramesh, Samyuktha and Golla, Hemashree and Kalivarathan, Divakar and Kulkarni, Madhurima and Campos, Luis A and Sekhar, Ashok and Naganathan, Athi N (2019) Engineering Order and Cooperativity in a Disordered Protein. In: BIOCHEMISTRY, 58 (19). pp. 2389-2397.

Muralidharan, J and Suguna, K and Surolia, A and Surolia, N (2003) Exploring the interaction energies for the binding of hydroxydiphenyl ethers to enoyl-acyl carrier protein reductases. In: Journal of Biomolecular Structure & Dynamics, 20 (4). pp. 589-594.

Murdeshwar, Maya S and Chatterji, Dipankar (2012) MS_RHII-RSD, a Dual-Function RNase HII-(p)ppGpp Synthetase from Mycobacterium smegmatis. In: JOURNAL OF BACTERIOLOGY, 194 (15). pp. 4003-4014.

Murgod, Uday A and Saleem, Quasar and Anand, A and Brahmachari, SK and Jain, Sanjeev and Muthane, Uday B (2001) A clinical study of patients with genetically confirmed Huntington's disease from India. In: Journal of the Neurological Sciences, 190 (1-2). pp. 73-78.

Murthy, Ambika Mosale Venkatesh and Mathivanan, Subashini and Chittori, Sagar and Savithri, Handanahal Subbarao and Murthy, Mathur Ramabhadrashastry Narasimha (2015) Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (8). pp. 1640-1648.

Murthy, HM Krishna and Bhat, TN and Vijayan, M (1982) Structure of a new crystal form of 2- ([3-(trifluoromethyl)phenyl] amino)benzoic acid (flufenamic acid). In: Acta Crystallographica Section B, 38 . pp. 315-317.

Murthy, HM Krishna and Bhat, TN and Vijayan, M (1982) Structure of a new crystal form of 2-{[3-(trifluoromethyl)phenyl]amino}benzoic acid (flufenamic acid). In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 38 (1). pp. 315-317.

Murthy, HMK and Bhat, TN and Vijayan, M (1978) X-Ray Studies of Analgetic Fenamates. In: Acta Crystallographica Section A, 34 (Suppl.). S80-S80.

Murthy, Krishna HM and Vijayan, M and Brehm , L (1979) Structural Studies of Analgesics and Their Interactions. V.* The Crystal and Molecular Structure of Metamizol Monohydrate. In: Acta Crystallographica Section B, 35 (MAR). pp. 612-615.

Murthy, MRN (2020) COVID-19, structural biology and the march of science. In: Current Science, 119 (7). pp. 1067-1068.

Murthy, MRN (1983) Comparison of the Nucleotide Sequences of Cucumber Mosaic Virus and Brome Mosaic Virus. In: Journal of Molecular Biology, 168 (3). pp. 469-475.

Murthy, MRN (1994) Discussion meeting on macromolecular crystallographyï¿½A report. In: Current science (Bangalore), 67 (3). pp. 148-149.

Murthy, MRN (1991) First 3D structure of a DNA virus. In: Current Science (Bangalore), 60 (11). pp. 620-621.

Murthy, MRN (2019) Foreword. In: Data Processing Handbook for Complex Biological Data Sources . xiii.

Murthy, MRN (2003) Interatomic contacts in viral capsids. In: Current Science, 85 (7). pp. 1071-1074.

Murthy, MRN (1990) Virus structure determination. In: Current Science (Bangalore), 59 (10). p. 493.

Murthy, MRN (1984) A fast method of comparing protein structures. In: Feebs letters, 168 (1). pp. 97-102.

Murthy, MRN and Bhuvaneswari, M and Subramanya, HS and Gopinath, K and Savithri, HS (1997) Structure of Sesbania mosaic virus at 3 angstrom resolution. In: Biophysical Chemistry, 68 (1-3). pp. 33-42.

Murthy, MRN and Chandrashekaran, MK and Rao, Lakshmana JR (2001) Astrology and science-in response. In: Current Science, 80 (9). pp. 1088-1089.

Murthy, MRN and Savithri, HS (1985) Similarities in the Genomic Sequence and Coat Protein-Structure of Plant Viruses. In: Journal of Bioscience, 8 (3-4). pp. 815-821.

Murthy, PN and Tulapurkara, EG (1968) Note: Creep behaviour of high density polyethylene. In: International Journal of Mechanical Sciences, 10 (1). pp. 57-59.

N

Naaz, Afsana and Ahad, Shazia and Rai, Ankit and Surolia, Avadhesha and Panda, Dulal (2019) BubR1 depletion delays apoptosis in the microtubule-depolymerized cells. In: BIOCHEMICAL PHARMACOLOGY, 162 (SI). pp. 177-190.

Nadig, Gautham and Ratnaparkhi, Girish S and Varadarajan, Raghavan and Vishveshwara, Saraswathi (1996) Dynamics of ribonuclease A and ribonuclease S: Computational and experimental studies. In: Protein Science, 05 (10). pp. 2104-2114.

Nadig, Nadig and Vishveshwara, Saraswathi (1997) Effects of substrate binding on the dynamics of RNase A: Molecular dynamics simulations of UpA bound and native RNase A. In: Biopolymers, 42 (5). pp. 505-520.

Nag, Sudip and Sikdar, Sujit Kumar and Thakor, Nitish Vyomesh and Rao, Valipe Ramgopal and Sharma, Dinesh (2015) Sensing of Stimulus Artifact Suppressed Signals From Electrode Interfaces. In: IEEE SENSORS JOURNAL, 15 (7). pp. 3734-3742.

Nagaich, AK and Bhattacharyya, D and Brahmachari, SK and Bansal, Manju (1994) CA/TG sequence at the 5' end of oligo(A)-tracts strongly modulates DNA curvature. In: Journal of Biological Chemistry, 269 (10). pp. 7824-7833.

Nagaich, AK and Bhattacharyya, D and Brahmachari, SK and Bansdm, M (1994) CAITG sequence at the 5' end of Oligo(A)-tracts strongly modulates DNA curvature. In: Journal of biological chemistry, 269 (10). 7824 -7833.

Nagapriya, KS and Raychaudhuri, AK and Chatterji, Dipankar (2006) Direct observation of large temperature fluctuations during DNA thermal denaturation. [Preprint]

Nagaraj, H and Narayanan, R (2023) Plasticity manifolds and degeneracy govern circadian oscillations of neuronal intrinsic properties in the suprachiasmatic nucleus. In: iScience, 26 (4).

Nagaraj, R and Balaram, P (1981) Alamethicin, a Transmembrane Channel. In: Accounts Of Chemical Research, 14 (11). pp. 356-362.

Nagaraj, R and Balaram, P (1981) Fluorescence Studies Of Synthetic Hydrophobic Peptide-Fragments Of Alamethicin And Related Polypeptides Aggregation And Lipid Interactions. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 96.

Nagaraj, R and Balaram, P (1979) Fluorescent Hydrophobic Peptide Fragments of Emerimicin. Models for the Study of Peptide Aggregation and Interactions with Lipids and Proteins. In: Biochemical and Biophysical Research Communications, 89 (4). pp. 1041-1049.

Nagaraj, R and Balaram, P (1980) Membrane modifying linear polypeptide antibiotics. In: Proceedings of the Indian National Science Academy . pp. 199-218.

Nagaraj, R and Balaram, P (1981) Racemization at proline residues during peptide bond formation : A study of diastereomeric mixtures of synthetic alamethicin fragments by 270 MHz 1H NMR. In: Tetrahedron, 37 (10). pp. 2001-2005.

Nagaraj, R and Balaram, P (1981) Solution Phase Synthesis of Alamethicin I. In: Tetrahedron, 37 (6). pp. 1263-1270.

Nagaraj, R and Balaram, P (1978) A Stereochemically-Constrained Enkephalin Analog: $\alpha-{Aminoisobutyryl}^2$ ${methionine}^5$ enkephalinamide. In: FEBS Letters, 96 (2). pp. 273-276.

Nagaraj, R and Balaram, P (1978) A stereochemically constrained enkephalin analog. 2-a-aminoiso-butyryl-5-methionine enkephali. In: FEBS Letters, 96 (2). pp. 273-276.

Nagaraj, R and Balaram, P (1978) A stereochemically-constrained enkephalin analog : Î±-Aminoisobutyryl2 methionine5 enkephalinamide. In: FEBS Letter, 96 (2). pp. 273-276.

Nagaraj, R and Balaram, Padmanabhan (1981) Conformations of synthetic alamethicin fragments. Evidence for 310 helical folding from 270-MHz hydrogen-1 nuclear magnetic resonance and circular dichroism studies. In: Biochemistry, 20 (10). pp. 2828-2835.

Nagaraj, R and Mathew, MK and Balaram, P (1980) Cation Translocating Effects of Alamethicin and its Synthetic Fragments in Lipid Membranes: Influence of peptide chain length and charge. In: FEBS Letters, 121 (2). pp. 365-368.

Nagaraj, R and Shamala, N and Balaram, P (1979) Stereochemically Constrained Linear Peptides. Conformations of Peptides Containing \alpha-Aminoisobutyric Acid. In: Journal of the American Chemical Society, 101 (1). pp. 16-20.

Nagaraj, R and Sudha, TS and Shivaji, S and Balaram, P (1979) Enkephalin Analogs. Introduction of Stereochemical Constraints, Metal Binding Sites and Fluorescent Groups. In: FEBS Letters, 106 (2). pp. 271-274.

Nagaraj, R and Venkatachalapathi, YV and Balaram, P (1980) Rotational isomerism about the Ca-CO bond in proline derivatives. 1H and 13C NMR studies of benzyloxycarbonyl-Pro-N-methylamide and pivaloyl-Pro-N-methylamide. In: Journal of Peptide Research, 16 (4). 291 -298.

Nagaraj, Ramakrishnan and Balaram, Padmanabhan (1977) Facile diketopiperazine formation from dipeptides containing a-aminoisobutyric acid. Conformational factors influencing Cyclisation. In: Heterocycles, 7 (2). pp. 885-890.

Nagarajan, Deepesh and Roy, Natasha and Kulkarni, Omkar and Nanajkar, Neha and Datey, Akshay and Ravichandran, Sathyabaarathi and Thakur, Chandrani and Sandeep, T and Aprameya, Indumathi and Sarma, Siddhartha P and Chakravortty, Dipshikha and Chandra, Nagasuma (2019) Omega 76: A designed antimicrobial peptide to combat carbapenem- and tigecycline-resistant Acinetobacter baumannii. In: SCIENCE ADVANCES, 5 (7).

Nagarajan, Deepesh and Sukumaran, Sujeesh and Deka, Geeta and Krishnamurthy, Kiran and Atreya, Hanudatta S and Chandra, Nagasuma (2018) Design of a heme-binding peptide motif adopting a beta-hairpin conformation. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 293 (24). pp. 9412-9422.

Nagarajan, M and Rao, VSR (1979) Conformational studies of proteoglycans: Theoretical studies on the conformation of heparin. In: Biopolymers, 18 (6). pp. 1407-1420.

Nagarajan, VS and Rao, KJ (1990) Thermally induced chemical and structural changes in alumina-zirconia-silica gels during the formation of ceramic composites. In: Journal of Solid State Chemistry, 88 (2). pp. 419-428.

Nagarajaram, HA and Ramakrishnan, C (1991) Energy minimization studies on cyclic pentapeptide. In: National Symposium on Biophysics, 20-22 Feb. 1990, Calcutta, India, pp. 449-454.

Nagarajaram, HA and Paul, PKC and Ramanarayanan, K and Soman, KV and Ramakrishnan, C (1992) Conformational studies on beta-bend containing a cis peptide unit. In: International Journal of Peptide & Protein Research, 40 (5). pp. 383-394.

Nagarajaram, HA and Ramakrishnan, C (1995) Stereochemical studies on cyclic peptides: Detailed energy minimization studies on hydrogen bonded all-trans cyclic pentapeptide backbones. In: Journal of Biosciences, 20 (5). 591 -611.

Nagarajaram, HA and Sowdhamini, R and Ramakrishnan, C and Balaram, P (1993) Termination of right handed helices in proteins by residues in left handed helical conformations. In: FEBS Letters, 321 (1). pp. 79-83.

Nagendra, HG and Sudarsanakumar, C and Vijayan, M (1995) Characterization of lysozyme crystals with unusually low solvent content. In: Acta Crystallographica Section D, 51 (Part 3). pp. 390-392.

Nagendra, HG and Sudarsankumar, C and Vijayan, M (1996) An X-ray Analysis of Native Monoclinic Lysozyme. A Case Study on the Reliability of Refined Protein Structures and a Comparison with the Low-Humidity Form in Relation to Mobility and Enzyme Action. In: Acta Crystallographica Section D, 52 . pp. 1067-1074.

Nagendra, HG and Sukumar, N and Vijayan, M (1998) Role of water in plasticity, stability, and action of proteins: The crystal structures of lysozyme at very low levels of hydration. In: Proteins: Structure, Function, and Genetics, 32 (2). pp. 229-240.

Nair, AV and Singh, A and Rajmani, RS and Chakravortty, D (2024) Salmonella Typhimurium employs spermidine to exert protection against ROS-mediated cytotoxicity and rewires host polyamine metabolism to ameliorate its survival in macrophages. In: Redox Biology, 72 .

Nair, C. Mohana Kumaran and Vijayan, Mamannamana (1980) The Crystal Structure of Pivaloyl- D- prolyl-L- prolyl- L-alanyl-N- methylamide. In: Journal Of The Chemical Society-Perkin Transactions (12). pp. 1800-1804.

Nair, CMK and Nagaraj, R and Ramaprasad, S and Balaram, P and Vijayan, M (1981) Internal Water Bridge and Antiparallel Sheet in the Structure of Benzyloxycarbonyl-L-alanyl-D-phenylalanyl-L-proline Monohydrate. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 37 (3). pp. 597-601.

Nair, CMK and Vijayan, M (1981) Structural characteristics of prolyl residues - a review. In: Journal of the Indian Institute of Science Section C-Biological Sciences, 63 (4). pp. 81-103.

Nair, CMK and Vijayan, M (1980) Structure of a peptide oxazolone: 2-(1'-benzyloxycarbonylamino-1'-methylethyl)-4,4-dimethyl-5-oxazolone. In: Acta Crystallographica Section-B Structural Crystallography and Crystal Chemistry, 36 (6). pp. 1498-1500.

Nair, Mohanakumaran C and Vijayan, Mamannamana and Venkatachalapathi, Yalamoori V and Balaram, Padmanabhan (1979) X-Ray Crystal Structure of Pivaloyl-D-Pro-L-Pro-L-Ala-N-Methylamide; observation of a Consecutive \beta-turn Conformation. In: Journal of the Chemical Society, Chemical Communications (24). pp. 1183-1184.

Nair, Raji R and Kiran, Amritanjali and Saini, Deepak Kumar (2017) G protein Signaling, Journeys Beyond the Plasma Membrane. In: JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE, 97 (1). pp. 95-108.

Nair, Smita and Gayathri, P and Murthy, MRN and Savithri, HS (2008) Stacking interactions of W271 and H275 of SeMV serine protease with W43 of natively unfolded VPg confer catalytic activity to protease. In: Virology, 382 (1). pp. 83-90.

Nair, Sudarslal Sadasivan and Nilsson, Carol L and Emmett, Mark R and Schaub, Tanner M and Gowd, Konkallu Hanumae and Thakur, Suman S and Krishnan, KS and Balaram, Padmanabhan and Marshall, Alan G (2006) De Novo Sequencing and Disulfide Mapping of a Bromotryptophan-Containing Conotoxin by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. In: Analytical Chemistry, 78 (23). pp. 8082-8088.

Najar, TA and Khare, S and Varadarajan, R (2018) Rapid mapping of protein binding sites and conformational epitopes by coupling yeast surface display to chemical labeling and deep sequencing. [Book Chapter]

Najar, Tariq Ahmad and Kar, Uddipan and Flynn, Jessica A and Varadarajan, Raghavan (2018) Isolation of an in Vitro Affinity-Matured, Thermostable ``Headless'' HA Stem Fragment That Binds Broadly Neutralizing Antibodies with High Affinity. In: BIOCHEMISTRY, 57 (26). pp. 3817-3829.

Najar, Tariq Ahmad and Khare, Shruti and Pandey, Rajesh and Gupta, Satish K and Varadarajan, Raghavan (2017) Mapping Protein Binding Sites and Conformational Epitopes Using Cysteine Labeling and Yeast Surface Display. In: STRUCTURE, 25 (3). pp. 395-406.

Nambi, Subhalaxmi and Gupta, Kallol and Bhattacharyya, Moitrayee and Ramakrishnan, Parvathy and Ravikumar, Vaishnavi and Siddiqui, Nida and Thomas, Ann Terene and Visweswariah, Sandhya S (2013) Cyclic AMP-dependent protein lysine acylation in mycobacteria regulates fatty acid and propionate metabolism. In: Journal Of Biological Chemistry, 288 (20). pp. 14114-14124.

Namboodiri , K and Gaber , BP and Easwaran , ER and Balasubramanian , SV (1994) Calcium ionophore, A23187 and its amino acid complexes: spectroscopic and molecular modeling studies. In: Journal of Biomolecular Structure & Dynamics, 11 (5). 913 -926.

Namboori, Seema and Mhatre, Natasha and Sujatha, Sentivel and Srinivasan, Narayanaswamy and Pandit, Shashi Bhushan (2004) Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome of Mycobacterium tuberculosis H37Rv. In: Journal of Biosciences, 29 (3). pp. 245-259.

Namboori, Seema and Srinivasan, Narayanaswamy and Pandit, Shashi B (2004) Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures. In: In Silico Biology, 4 . pp. 445-460.

Nambudripad, R and Bansal, M and Sasisekharan, V (1981) Role of Nonplanar Peptide Unit in Regular Polypeptide Helices - New Model for Pply-Beta-Benzyl-L-Aspartate. In: International Journal of Peptide & Protein Research, 18 (4). pp. 374-382.

Nanda, B and Bhowmick, J and Varadarajan, R and Sarma, SP (2024) Backbone assignment of CcdBG100T toxin from E.coli in complex with the toxin binding C-terminal domain of its cognate antitoxin CcdA. In: Biomolecular NMR Assignments .

Nandi, Animesh and Visweswariah, Sandhya S and Suguna, K and Surolia, Avadhesha (1998) Topological mimicry and epitope duplication in the guanylyl cyclase C receptor. In: Protein Science, 07 (10). pp. 2175-2183.

Narasimhan, TR and Ananth, M and Swamy, MN and Babu, MR and Mangala, A and Rao, PVS (1980) Toxicity of parthenium-hysterophorus l-partheniosis in cattle and buffalos. In: Indian Journal of Animal Sciences, 50 (2). pp. 173-178.

Narayan, Priya and Krishnarjuna, Bankala and Vishwanathan, Vinaya and Kumar, Dasappa Jagadeesh and Babu, Sudhir and Ramanathan, Krishna Venkatachala and Easwaran, Kalpathy Ramaier Katchap and Nagendra, Holenarasipur GunduRao and Raghothama, Srinivasarao (2013) Does aluminium bind to histidine? an NMR investigation of Amyloid beta 12 and Amyloid beta 16 fragments. In: Chemical Biology & Drug Design, 82 (1). pp. 48-59.

Narayan, R and Sharma, M and Yadav, R and Biji, A and Khatun, O and Kaur, S and Kanojia, A and Joy, CM and Rajmani, R and Sharma, PR and Jeyasankar, S and Rani, P and Shandil, RK and Narayanan, S and Rao, DC and Satchidanandam, V and Das, S and Agarwal, R and Tripathi, S (2023) Picolinic acid is a broad-spectrum inhibitor of enveloped virus entry that restricts SARS-CoV-2 and influenza A virus in vivo. In: Cell Reports Medicine, 4 (8).

Narayan, Revathi and Balaram, P (1976) Synthesis and Fluorescence Properties of a Probe for Membrane Anionic Sites. In: Biochemical and Biophysical Research Communications, 70 (4). pp. 1122-1128.

Narayanan, Eswar and Ramakrishnan, C (1999) Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures. In: Protein Engineering, 12 (6). pp. 447-455.

Narayanan, R and Balaram, P (1981) Fluorescence And Nmr-Studies Of The Binding Of Cholinergic Fluorescent-Probes To Horse Serum-Cholinesterase. In: International Journal Of Peptide And Protein Research, 17 (2). pp. 170-180.

Narayanan, R and Balaram, P (1978) Fluorescent probe studies of biomembranes and model systems. The design and use of anionic site reporters. In: Proceedings of the National Symposium on Biomembranes and Model Systems . pp. 53-57.

Narayanan, R and Balaram, P (1980) Flurescent-Probe Studies of Biological-Membranes and Model Systems. In: Journal of Scientific and Industrial Research, 39 (8). pp. 441-452.

Narayanan, R and Balaram, P (1978) Homologous Cholinergic Fluorescent Probes. Synthesis and Fluorescence Properties. In: FEBS Letters, 93 (1). pp. 38-42.

Narayanan, R and Balaram, Padmanabhan (1980) Fluorescent probe studies of biological membranes and model systems. In: Journal of Scientific & Industrial Research (JSIR), 39 (8). pp. 441-452.

Narayanan, R and Paul, R and Balaram, P (1980) Fluorescent Probe Studies of Mixed Micelles of Phospholipids and Bile Salts: Effect of Cholesterol Incorporation. In: Biochimica et Biophysica Acta (BBA) – Biomembranes, 597 (1). pp. 70-82.

Narayanan, Revathi and Balaram, P (1980) Synthesis of Homologous Fluorescent Carboxylates and their Application to the Study of Bovine Serum Albumin. In: Bioorganic Chemistry, 9 (3). pp. 352-362.

Narayanan, Rishikesh and Johnston, Daniel (2012) Functional maps within a single neuron. In: JOURNAL OF NEUROPHYSIOLOGY, 108 (9). pp. 2343-2351.

Narayanan, Sriram and Surendranath, Kalpana and Bora, Namrata and Surolia, Avadhesha and Karande, Anjali A (2005) Ribosome inactivating proteins and apoptosis. In: FEBS letters, 579 (6). pp. 1324-1331.

Narayanan, V and Bobbili, KB and Sivaji, N and Jayaprakash, NG and Suguna, K and Surolia, A and Sekhar, A (2022) Structure and Carbohydrate Recognition by the Nonmitogenic Lectin Horcolin. In: Biochemistry, 61 (6). pp. 464-478.

Naresh, Kottari and Avaji, Prakash Gouda and Maiti, Krishnagopal and Bharati, Binod Kumar and Syal, Kirtimaan and Chatterji, Dipankar and Jayaraman, Narayanaswamy (2012) Synthesis of beta-arabinofuranoside glycolipids, studies of their binding to surfactant protein-A and effect on sliding motilities of M. smegmatis. In: Glycoconjugate Journal, 29 (2-3). pp. 107-118.

Naresh, Kottari and Bharati, Binod Kumar and Avaji, Prakash Gouda and Chatterji, Dipankar and Jayaraman, Narayanaswamy (2011) Synthesis, biological studies of linear and branched arabinofuranoside-containing glycolipids and their interaction with surfactant protein A. In: Glycobiology, 21 (9). pp. 1237-1254.

Naresh, Kottari and Bharati, Binod Kumar and Avaji, Prakash Gouda and Jayaraman, Narayanaswamy and Chatterji, Dipankar (2010) Synthetic arabinomannan glycolipids and their effects on growth and motility of the Mycobacterium smegmatis. In: Organic & Biomolecular Chemistry, 8 (3). pp. 592-599.

Naresh, Kottari and Bharati, Binod Kumar and Jayaraman, Narayanaswamy and Chatterji, Dipankar (2008) Synthesis and mycobacterial growth inhibition activities of bivalent and monovalent arabinofuranoside containing alkyl glycosides. In: Organic and Biomolecular Chemistry, 6 (13). pp. 2388-2393.

Narwani, TJ and Srinivasan, N and Chakraborti, S (2021) NOD: a web server to predict New use of Old Drugs to facilitate drug repurposing. In: Scientific Reports, 11 (1).

Narwani, Tarun Jairaj and Santuz, Hubert and Shinada, Nicolas and Vattekatte, Akhila Melarkode and Ghouzam, Yassine and Srinivasan, Narayanasamy and Gelly, Jean-Christophe and de Brevern, Alexandre G (2017) Recent advances on polyproline II. In: AMINO ACIDS, 49 (4). pp. 705-713.

Natarajan, C and Srivastava, A (2024) Efficiently determining membrane-bound conformations of peripheral membrane proteins using replica exchange with hybrid tempering: Orientation of PMP on lipid bilayer using replica exchange. In: European Physical Journal: Special Topics .

Natarajan, L and De Sciscio, ML and Nardi, AN and Sekhar, A and Del Giudice, A and D'Abramo, M and Naganathan, AN (2024) A finely balanced order-disorder equilibrium sculpts the folding-binding landscape of an antibiotic sequestering protein. In: Proceedings of the National Academy of Sciences of the United States of America, 121 (20). e2318855121.

Natchiar, Kundhavai S and Jeyaprakash, Arockia A and Ramya, TNC and Thomas, CJ and Suguna, K and Surolia, A and Vijayan, M (2004) Structural plasticity of peanut lectin: an X-ray analysis involving variation in pH, ligand binding and crystal structure. In: Acta Crystallographica Section D, 60 . pp. 211-219.

Natchiar, Kundhavai S and Srinivas, O and Mitra, Nivedita and Surolia, A and Jayaraman, N and Vijayan, M (2006) Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin. In: Acta Crystallographica Setcion D: Biological Crystallography, 62 (11). pp. 1413-1421.

Natchiar, S. Kundhavai and Srinivas, O and Mitra, Nivedita and Dev, Sagarika and Jayaraman, N and Surolia, A and Vijayan, M (2006) Multivalency in lectins A crystallographic, modelling and light-scattering study involving peanut lectin and a bivalent ligand. In: Current Science, 90 (9). pp. 1230-1237.

Natraj, DV and Srinivasan, N and Sowdhamini, R and Ramakrishnan, C (1995) Alpha-Turns In Protein Structures. In: Current Science, 69 (5). pp. 434-447.

Naveenkumar, N and Prabantu, VM and Vishwanath, S and Sowdhamini, R and Srinivasan, N (2022) Structures of distantly related interacting protein homologs are less divergent than non-interacting homologs. In: FEBS Open Bio .

Naveenkumar, Nagarajan and Sowdhamini, Ramanathan and Srinivasan, Narayanaswamy (2019) Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family. In: FEBS OPEN BIO, 9 (11). pp. 1848-1859.

Navratna, V and Nadig, S and Sood, V and Prasad, K and Arakere, G and Gopal, B (2010) Molecular Basis for the Role of Staphylococcus aureus Penicillin Binding Protein 4 in Antimicrobial Resistance. In: Journal of Bacteriology, 192 (1). pp. 134-144.

Navratna, Vikas and Gopal, Balasubramanian (2013) Crystallization and preliminary X-ray diffraction studies of Staphylococcus aureus homoserine dehydrogenase. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (11). pp. 1216-1219.

Navratna, Vikas and Reddy, Govardhan and Gopal, Balasubramanian (2015) Structural basis for the catalytic mechanism of homoserine dehydrogenase. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (5). pp. 1216-1225.

Nayak, Tapan K and Sikdar, SK (2007) Time-Dependent Molecular Memory in Single Voltage-Gated Sodium Channel. In: Journal of Membrane Biology, 219 (1-3). pp. 19-36.

Nayak, SR and Joseph, D and HÃ¶fner, G and Dakua, A and Athreya, A and Wanner, KT and Kanner, BI and Penmatsa, A (2023) Cryo-EM structure of GABA transporter 1 reveals substrate recognition and transport mechanism. In: Nature Structural and Molecular Biology, 30 (7). pp. 1023-1032.

Nayak, Tapan K and Harinath, S and Nama, S and Somasundaram, K and Sikdar, SK (2009) Inhibition of Human Two-Pore Domain K+ Channel TREK1 by Local Anesthetic Lidocaine: Negative Cooperativity and Half-of-Sites Saturation Kinetics. In: Molecular Pharmacology, 76 (4). pp. 903-917.

Newbold, Richard J and Deery, Evelyne C and Walker, Caroline E and Wilkie, Susan E and Srinivasan, Narayanaswamy and Hunt, David M (2001) The destabilization of human GCAP1 by a proline to leucine mutation might cause cone-rod dystrophy. In: Human Molecular Genetics, 10 (1). pp. 47-54.

Nickolaus, C and Vargas, C and Reichenwallner, J and Chakour, M and Selmke, B and Chakraborty, R and Varadarajan, R and Keller, S and Trommer, WE (2020) The Molten Globule State of Maltose-Binding Protein: Structural and Thermodynamic Characterization by EPR Spectroscopy and Isothermal Titration Calorimetry. In: Applied Magnetic Resonance, 51 (9-10). pp. 877-886.

Nisar Ahmad, * and Srinivas, VR and BhanuprakashReddy, G and Surolia, Avadhesha (1998) Thermodynamic characterization of the conformational stability of the homodimeric protein, pea lectin. In: Biochemistry, 37 (47). pp. 16765-16772.

O

Ojha, Anil K and Mukherjee, Tapan K and Chatterji, Dipankar (2000) High Intracellular Level of Guanosine Tetraphosphate in Mycobacterium smegmatis Changes the Morphology of the Bacterium. In: Infection and Immunity, 68 (7). pp. 4084-4091.

Ojha, Anil Kr and Varma, Saaket and Chatterji, Dipankar (2002) Synthesis of an unusual polar glycopeptidolipid in glucose-limited culture of Mycobacterium smegmatis. In: Microbiology, 148 (10). pp. 3039-3048.

Olson , WK and Bansal , M and Burley , SK and Dickerson, Richard E (2001) A standard reference frame for the description of Nucleic Acid Base-Pair Geometry. In: Journal of Molecular Biology, 313 (1). 229-237 .

Orozco, Modesto and Srinivasan, Narayanaswamy (2016) Editorial overview: Theory and simulation. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 37 . IV-V.

P

PAUL, PKC and Ramakrishnan, C (1987) Stereochemical studies on cyclic peptides. XIII. Energy minimization studies on cyclic hexapeptides having hydrogen bonds. In: International Journal Of Peptide And Protein Research, 29 (4). pp. 433-454.

Padiadpu, Jyothi and Baloni, Priyanka and Anand, Kushi and Munshi, MohamedHusen and Thakur, Chandrani and Mohan, Abhilash and Singh, Amit and Chandra, Nagasuma (2016) Identifying and Tackling Emergent Vulnerability in Drug-Resistant Mycobacteria. In: ACS INFECTIOUS DISEASES, 2 (9). pp. 592-607.

Padmakumar, VC and Varadarajan, Raghavan (2003) A gradient PCR-based screen for use in site-directed mutagenesis. In: Analytical Biochemistry, 314 (2). pp. 310-315.

Padmanabhan, Prasad K and Mukherjee, Angana and Singh, Sushma and Chattopadhyaya, Swati and Gowri, Venkataraman S and Myler, Peter J and Srinivasan, Narayanaswamy and Madhubala, Rentala (2005) Glyoxalase I from Leishmania donovani: A potential target for anti-parasite drug. In: Biochemical and Biophysical Research Communications, 337 (4). pp. 1237-1248.

Padmanabhan, Sarasua and Stephen, Suresh and Vijayan, Mamannamana (1995) DL-Proline Monohydrate. In: Acta Crystallographica Section C, 51 . pp. 2098-2100.

Padmashri, R and Chakrabarti, Kalyan Sundar and Sahal, D and Mahalakshmi, R and Sarma, SP and Sikdar, SK (2004) Functional characterization of the pentapeptide QYNAD on $rNa_ V1.2$ channels and its NMR structure. In: Pflügers Archiv European Journal of Physiology, 447 (6). pp. 895-907.

Padmashri, R and Sikdar, SK (2008) Glutamate transporter blockade affects $Ca^{2+}$ responses in astrocytes. In: Neuroscience, 151 (1). pp. 56-62.

Padmashri, Ragunathan and Ganguly, Archan and Mondal, Partha Pratim and Rajan, K and Sikdar, Sujit Kumar (2006) Kynurenate treatment of autaptic hippocampal microcultures affect localized voltage-dependent calcium diffusion in the dendrites. In: Cell Calcium, 39 (3). pp. 247-258.

Padmashri, Ragunathan and Sikdar, Sujit Kumar (2007) Glutamate pretreatment affects $Ca^{2+}$ signaling in processes of astrocyte pairs. In: Journal of Neurochemistry, 100 (1). pp. 105-117.

Pai, Vinitha R and Rajaram, V and Bisht, Shveta and Bhavani, BS and Rao, N Appaji and Murthy, MRN and Savithri, HS (2009) Structural and functional studies of Bacillus stearothermophilus serine hydroxymethyltransferase: the role of Asn(341), Tyr(60) and Phe(351) in tetrahydrofolate binding. In: Biochemical Journal, 418 (Part 3). pp. 635-642.

Pai Verneker, VR and Rajaram , V and Bisht , S and Bhavani , BS and Rao , NA and Murthy , MR and Savithri, HS (2009) Structural and functional studies of Bacillus stearothermophilus serine hydroxymethyl transferase: the role of N341, Y60 and F351 in tetrahydrofolate binding. In: Biochemical Journal, 418 . pp. 635-642.

Pak, Alexander J and Grime, John MA and Sengupta, Prabuddha and Chen, Antony K and Durumeric, Aleksander EP and Srivastava, Anand and Yeager, Mark and Briggs, John AG and Lippincott-Schwartz, Jennifer and Voth, Gregory A (2017) Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114 (47). E10056-E10065.

Pal, AK and Ghorai, D and Ge, X and Sarkar, B and Sahu, AK and Chaudhary, V and Jhawar, R and Sanyal, S and Singh, M and Ghosh, A (2024) Second messenger c-di-AMP regulates multiple antibiotic sensitivity pathways in Mycobacterium smegmatis by discrete mechanisms. In: FEMS Microbiology Letters, 371 .

Pal, AK and Ghosh, A (2022) c-di-AMP signaling plays important role in determining antibiotic tolerance phenotypes of Mycobacterium smegmatis. In: Scientific Reports, 12 (1).

Pal, M and Khan, J and Kumar, R and Surolia, A and Gupta, S (2019) Testosterone supplementation improves insulin responsiveness in HFD fed male T2DM mice and potentiates insulin signaling in the skeletal muscle and C2C12 myocyte cell line. In: PLoS ONE, 14 (11).

Pal, Rumpa and Reddy, M B Madhusudana and Dinesh, B and Venkatesha, Manjunath A. and Grabowsky, Simon and Jelsch, Christian and Row, Tayur N Guru (2018) &ITSyn &ITvs &ITAnti &ITCarboxylic Acids in Hybrid Peptides: Experimental and Theoretical Charge Density and Chemical Bonding Analysis. In: JOURNAL OF PHYSICAL CHEMISTRY A, 122 (14). pp. 3665-3679.

Pal, Rumpa and Reddy, Madhusudana MB and Dinesh, Bhimareddy and Balaram, Padmanabhan and Row, Tayur Guru N (2014) Temperature-Induced Reversible First-Order Single Crystal to Single Crystal Phase Transition in Boc-gamma(4)(R)Val-Val-OH: Interplay of Enthalpy and Entropy. In: JOURNAL OF PHYSICAL CHEMISTRY A, 118 (40). pp. 9568-9574.

Palaniappan, C and Rajendran, S and Sekar, K (2024) Alternate conformations found in protein structures implies biological functions: A case study using cyclophilin A. In: Current Research in Structural Biology, 7 .

Pallavi, Ghosh and Dipankar, Chatterji (2003) Protein folding activity and the central dogma of molecular biology. In: Current Science, 85 (6). pp. 755-761.

Panda, S and Anandan, A and Shafi, KM and Naika, MBN and Sowdhamini, R and Vanishree, G and Sarkar, S and Travis, AJ and Norton, GJ and Price, AH (2024) Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency. In: Functional & integrative genomics, 24 (6). p. 198.

Pandey, Anurag and Sikdar, Sujit Kumar (2014) Depression biased non-Hebbian spike-timing-dependent synaptic plasticity in the rat subiculum. In: JOURNAL OF PHYSIOLOGY-LONDON, 592 (16). pp. 3537-3557.

Pandey, B and Srividhya, S and Chatterjee, A and Mangala Prasad, V (2023) Role of surface glycans in enveloped RNA virus infections: A structural perspective. In: Proteins: Structure, Function and Bioinformatics .

Pandey, P and Srivastava, A (2024) sAMP-VGG16: Force-field assisted image-based deep neural network prediction model for short antimicrobial peptides. In: Proteins: Structure, Function and Bioinformatics .

Pandiakumar, Arun Kumar and Sarma, Siddhartha P and Samuelson, Ashoka G (2014) Mechanistic studies on the diazo transfer reaction. In: TETRAHEDRON LETTERS, 55 (18). pp. 2917-2920.

Pandit, Shashi B and Srinivasan, N (2004) Identification and Analysis of a New Family of Bacterial Serine Proteinases. In: In Silico Biology, 4 (4). pp. 563-572.

Pandit, S and Maroli, N and Naskar, S and Khatri, B and Maiti, PK and De, M (2022) Graphene oxide as a dual template for induced helicity of peptides. In: Nanoscale, 14 (21). pp. 7881-7890.

Pandit, SB and Balaji, S and Srinivasan, N (2004) Structural and Functional Characterization of Gene Products Encoded in the Human Genome by Homology Detection. In: IUBMB Life (International Union of Biochemistry and Molecular Biology: Life), 56 (6). pp. 317-331.

Pandit, Shashi B and Bhadra, Rana and Gowri, VS and Balaji, S and Anand, B and Srinivasan, N (2004) SUPFAM: A database of sequence superfamilies of protein domains. In: BMC Bioinformatics, 5 . pp. 1-5.

Pandit, Shashi B and Gosar, Dilip and Abhiman, Saraswathi and Sujatha, S and Dixit, Sayali S and Mhatre, Natasha S and Sowdhamini, R and Srinivasan, N (2002) SUPFAM—a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. In: Nucleic Acids Research, 30 (1). pp. 289-293.

Pandit, Shashi B and Srinivasan, N (2003) Survey for G-Proteins in the Prokaryotic Genomes: Prediction of Functional Roles Based on Classification. In: Proteins: Structure, Function, and Genetics, 52 (4). pp. 585-597.

Pandya, Urja and Prakash, Sunita and Shende, Kishor and Dhuldhaj, Umesh and Saraf, Meenu (2017) Multifarious allelochemicals exhibiting antifungal activity from Bacillus subtilis MBCU5. In: 3 BIOTECH, 7 .

Panickan, S and Bhatia, S and Bhat, S and Bhandari, N and Pateriya, AK and Kalaiyarasu, S and Sood, R and Tripathi, M (2022) Reverse genetics based H5N2 vaccine provides clinical protection against H5N1, H5N8 and H9N2 avian influenza infection in chickens. In: Vaccine, 40 (48). 6998 -7008.

Panjikar, Santosh K and Biswas, Margaret and Vishveshwara, Saraswathi (1997) Determinants of backbone packing in globular proteins: An analysis of spatial neighbours. In: Acta Crystallographica Section D-Biological Crystallography, 53 (Part 6). pp. 627-637.

Panse, Vikram G and Udgaonkar, Jayant B and Varadarajan, Raghavan (1998) SecB binds only to a late native-like intermediate in the folding pathway of barstar and not to the unfolded state. In: Biochemistry, 37 (41). pp. 14477-14483.

Panse, Vikram G and Beena, K and Philipp, Reinhard and Trommer, Wolfgang E and Vogel, Pia D and Varadarajan, Raghavan (2001) Electron Spin Resonance and Fluorescence Studies of the Bound-state Conformation of a Model Protein Substrate to the Chaperone SecB. In: Journal of Biological Chemistry, 276 (36). pp. 33681-33688.

Panse, Vikram G and Swaminathan, Chittoor P and Surolia, Avadhesha and Varadarajan, Raghavan (2000) Thermodynamics of Substrate Binding to the Chaperone SecB. In: Biochemistry, 39 (9). 2420 -2427.

Panse, Vikram G and Swaminathan, Chittor P and Aloor, Jim J and Surolia, Avadhesha and Varadarajan, Raghavan (2000) Unfolding Thermodynamics of the Tetrameric Chaperone, SecB. In: Biochemistry, 39 (9). 2362 -2369.

Panse, Vikram G and Vogel, Pia and Trommer, Wolfgang E and Varadarajan, Raghavan (2000) A Thermodynamic Coupling Mechanism for the Disaggregation of a Model Peptide Substrate by Chaperone SecB. In: Journal of Biological Chemistry, 275 (25). pp. 18698-18703.

Pant, Shashank (2016) Breakdown of 1D water wires inside charged carbon nanotubes. In: CHEMICAL PHYSICS LETTERS, 664 . pp. 159-166.

Pantakani, Krishna DV and Swapna, Lakshmipuram S and Srinivasan, Narayanaswamy and Mannan, Ashraf U (2008) Spastin oligomerizes into a hexamer and the mutant spastin (E442Q) redistribute the wild-type spastin into filamentous microtubule. In: Journal of Neurochemistry, 106 (2). pp. 613-624.

Panwar, Jatin and Roy, Rahul (2019) Integrated Field's metal microelectrodes based microfluidic impedance cytometry for cell-in-droplet quantification. In: MICROELECTRONIC ENGINEERING, 215 .

Pappachan, A and Savithri, HS and Murthy, MRN (2008) Structural and functional studies on a mesophilic stationary phase survival protein (Sur E) from Salmonella typhimurium. In: FEBS JOURNAL, 275 (23). pp. 5855-5864.

Pappachan, Anju and Chinnathambi, Subashchandrabose and Satheshkumar, PS and Savithri, HS and Murthy, MRN (2009) A single point mutation disrupts the capsid assembly in Sesbania Mosaic Virus resulting in a stable isolated dimer. In: Virology, 392 (2). pp. 215-221.

Pappachan, Anju and Subashchandrabose, Chinnathambi and Satheshkumar, PS and Savithri, HS and Murthy, MRN (2008) Structure of recombinant capsids formed by the $\beta$-annulus deletion mutant — rCP $(\Delta 48-59)$ of Sesbania mosaic virus. In: Virology, 375 (1). pp. 190-196.

Pareek, Vidhi and Samanta, Moumita and Joshi, Niranjan V and Balaram, Hemalatha and Murthy, Mathur RN and Balaram, Padmanabhan (2016) Connecting Active-Site Loop Conformations and Catalysis in Triosephosphate Isomerase: Insights from a Rare Variation at Residue96 in the Plasmodial Enzyme. In: CHEMBIOCHEM, 17 (7). pp. 620-629.

Parimoo, Satish and Padmanaban, G (1980) Biosynthesis of cytoplasmic subunits of cytochrome C oxidase in rat liver. In: Biochemical and Biophysical Research Communications, 95 (4). pp. 1673-1679.

Parrack, PK and Datta, S and Sasisekharan, V (1984) A detailed study of Li-DNA fibres at various salt concentrations reveals a non-helical B-DNA and a possible similarity of solution and solid state structures. In: Journal Of Biomolecular Structure & Dynamics, 2 (1). pp. 149-157.

Parrack, P and Sundaramoorthy, M and Sasisekharan, V (1985) Polymorphism in B-DNA - X-ray-Diffraction Studies on Li-DNA Fibers. In: Journal of Bioscience, 8 (3-4). pp. 507-516.

Parrack, Pradipkumar and Dasgupta, Dipak and Ayyer, Jayalekshmy and Sasisekharan, V (1987) Interaction of synthetic analogs of distamycin with DNA Role of the conjugated N-methylpyrrole system in specificity of binding. In: FEBS Letters, 212 (2). pp. 297-301.

Parthasarathy, S (1978) Successive refinement of structures with data of increasing resolution: a theoretical study for triclinic space groups. In: Acta Crystallographica Section A, 34 (Jul). 512-516 .

Parthasarathy, S and Balaram, Hemalatha and Balaram, P and Murthy, MRN (2002) Structures of Plasmodium falciparum triosephosphate isomerase complexed to substrate analogues: observation of the catalytic loop in the open conformation in the ligand-bound state. In: Acta Crystallographica Section D: Biological Crystallography, 58 (12). pp. 1992-2000.

Parthasarathy, S and Murthy, MRN (1998) Analysis of temperature factor distribution in high-resolution protein structures. In: Protien Science, 7 (2). p. 525.

Parthasarathy, S and Murthy, MRN (1997) Analysis of temperature factor distribution in high-resolution protein structures. In: Protien Science, 6 (12). pp. 2561-2567.

Parthasarathy, S and Murthy, MRN (2000) Correlating dynamics to conformational properties:An analysis of atomic displacement parameters (B-values) in high-resolution protein structures. In: Current Science, 78 (9). pp. 1123-1126.

Parthasarathy, S and Murthy, MRN (1999) On the correlation between the main-chain and side-chain atomic displacement parameters (B values) in high-resolution protein structures. In: Acta Crystallographica Section D Biological Crystallography, 55 (1). pp. 173-180.

Parthasarathy, S and Murthy, MRN (2000) Protein thermal stability: insights from atomic displacement parameters (B values). In: Protein Engineering, 13 (1). pp. 9-13.

Parthasarathy, S and Ravindra, G and Balaram, Hemalatha and Balaram, P and Murthy, MRN (2002) Structure of the Plasmodium falciparum Triosephosphate Isomerase-Phosphoglycolate Complex in Two Crystal Forms: Characterization of Catalytic Loop Open and Closed Conformations in the Ligand-Bound State. In: Biochemistry, 41 (44). 13178 -13188.

Parthasarathy, Sampathkumar and Eaazhisai, Kandiah and Balaram, Hemalatha and Balaram, Padmanabhan and Murthy, Mathur RN (2003) Structure of Plasmodium falciparum Triose-phosphate Isomerase-2-Phosphoglycerate Complex at 1.1-Å Resolution. In: Journal of Biological Chemistry, 278 (52). pp. 52461-52470.

Parvathy, J and Yazhini, A and Srinivasan, N and Sowdhamini, R (2023) Interfacial residues in proteinâ��protein complexes are in the eyes of the beholder. In: Proteins: Structure, Function and Bioinformatics .

Pasi, Shweta and Kant, Ravi and Gupta, Sarika and Surolia, Avadhesha (2015) Novel multimeric IL-1 receptor antagonist for the treatment of rheumatoid arthritis. In: BIOMATERIALS, 42 . pp. 121-133.

Pasi, Shweta and Kant, Ravi and Surolia, Avadhesha (2016) Toll/Interleukin-1 Receptor Domain Derived from TcpC (TIR-TcpC) Ameliorates Experimental Autoimmune Arthritis by Down-modulating Th17 Cell Response. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 291 (23). pp. 12358-12369.

Patanjali, Sankhavaram R and Sajjan, Sajjan U and Surolia, Avadhesha (1988) Erythrocyte-binding studies on an acidic lectin from winged bean (Psophocarpus tetragonolobus). In: Biochemical Journal, 252 (3). pp. 625-631.

Patanjali, SR and Swamy, MJ and Surolia, Avadhesha (1987) Studies on tryptophan residues of Abrus agglutinin Stopped-flow kinetics of modification and fluorescence-quenching studies. In: Biochemical Journal, 243 (1). pp. 79-86.

Patanjali, Sankhavaram R and Swamy, M Joginadha and Anantharam, Vellareddy and Khan, M Islam and Surolia, Avadhesha (1984) Chemical modification studies on Abrus agglutinin Involvement of tryptophan residues in sugar binding. In: Biochemical Journal, 217 (3). pp. 773-781.

Pataskar, Shashank S and Dash, Debasis and Brahmachari, Samir K (2001) Intramolecular i-motif Structure at Acidic pH for Progressive Myoclonus Epilepsy (EPM1) Repeat $d(CCCCGCCCCGCG)_n$. In: Journal of Biomolecular Structure & Dynamics,, 19 (2). pp. 307-314.

Pataskar, Shashank S and Dash, Debasis and Brahmachari, Samir K (2001) Progressive Myoclonus Epilepsy [EPM1] repeat $d(CCCCGCCCCGCG)_n$ forms folded hairpin structures at physiological pH. In: Journal of Biomolecular Structure & Dynamics, 19 (2). pp. 293-306.

Patel, CN and Kumar, SP and Modi, KM and Soni, MN and Modi, NR and Pandya, HA (2019) Cardiotonic steroids as potential Na /K -ATPase inhibitors – a computational study. In: Journal of Receptors and Signal Transduction, 39 (3). pp. 226-234.

Patel, Chirag N and Kumar, Sivakumar Prasanth and Rawal, Rakesh M and Patel, Daxesh P and Gonzalez, Frank J and Pandya, Himanshu A (2020) A multiparametric organ toxicity predictor for drug discovery. In: TOXICOLOGY MECHANISMS AND METHODS, 30 (3). pp. 159-166.

Patel, RD and Prasanth Kumar, S and Pandya, HA and Solanki, HA (2018) MDCKpred: a web-tool to calculate MDCK permeability coefficient of small molecule using membrane-interaction chemical features. In: Toxicology Mechanisms and Methods, 28 (9). pp. 685-698.

Patel, Siddharth and Indu, S and Ramakrishnan, C and Varadarajan, Raghavan (2013) PROTEIN DISULFIDE ANALYSIS AND DESIGN. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 296-311.

Patel, UR and Gautam, S and Chatterji, D (2020) Validation of omega subunit of rna polymerase as a functional entity. In: Biomolecules, 10 (11). pp. 1-11.

Patel, Unnatiben Rajeshbhai and Gautam, Sudhanshu and Chatterji, Dipankar (2019) Unraveling the Role of Silent Mutation in the omega-Subunit of Escherichia coli RNA Polymerase: Structure Transition Inhibits Transcription. In: ACS OMEGA, 4 (18). pp. 17714-17725.

Pathak, Chandramani and Singh, Rajiv Ranjan and Yadav, Saurabh and Kapoor, Neha and Raina, Varshiesh and Gupta, Sarika and Surolia, Avadhesha (2014) Evaluation of benzothiophene carboxamides as analgesics and anti-inflammatory agents. In: IUBMB LIFE, 66 (3). pp. 201-211.

Pathak, Khyati V and Keharia, Haresh and Gupta, Kallol and Thakur, Suman S and Balaram, Padmanabhan (2012) Lipopeptides from the Banyan Endophyte, Bacillus subtilis K1: Mass Spectrometric Characterization of a Library of Fengycins. In: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 23 (10). pp. 1716-1728.

Pathania, Amit and Gupta, Arvind Kumar and Dubey, Swati and Gopal, Balasubramanian and Sardesai, Abhijit A (2016) The Topology of the L-Arginine Exporter ArgO Conforms to an N-in-C-out Configuration in Escherichia coli: Requirement for the Cytoplasmic N-Terminal Domain, Functional Helical Interactions, and an Aspartate Pair for ArgO Function. In: JOURNAL OF BACTERIOLOGY, 198 (23). pp. 3186-3199.

Patil, Anita Ramdas and Misquith, Sandra and Dam, Tarun Kanti and Sharma, Vivek and Kapoor, Mili and Surolia, Avadhesha (2003) Exploring enzyme amplification to characterize specificities of protein-carbohydrate recognition. In: Methods in Enzymology, 362 . pp. 567-583.

Patil, AR and Thomas, CJ and Surolia, Avadhesha (2000) Kinetics and the mechanism of interaction of the endoplasmic reticulum chaperone, calreticulin, with monoglucosylated (Glc(1)Man(9)GlcNAc(2)) substrate. In: Journal of Biological Chemistry, 275 (32). pp. 24348-24356.

Patil, Anita R and Thomas, Celestine J and Surolia, Avadhesha (2000) Kinetics and the Mechanism of Interaction of the Endoplasmic Reticulum Chaperone, Calreticulin, with Monoglucosylated $(Glc_1Man_9GlcNAc_2)$ Substrate. In: The Journal of Biological Chemistry, 275 (32). pp. 24348-24356.

Patil, Anita R and Thomas, Celestine J and Surolia, Avadhesha (2000) Kinetics and the Mechanism of Interaction of the Endoplasmic Reticulum Chaperone, Calreticulin, with Monoglucosylated (Glc1Man9GlcNAc2) Substrate. In: Journal of Biological Chemistry, 275 (32). pp. 24348-24356.

Patra, Swarna M and Mishra, Rama K (1998) A divide-and-conquer algorithm use to study some benzenoid hydrocarbons. A graphtheoretic and computational approach. In: Bulletin of the Chemical Society of Japan, 71 (5). pp. 1013-1017.

Patra, Dhabaleswar and Mishra, Padmanabh and Surolia, Avadhesha and Vijayan, Mamannamana (2014) Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis. In: GLYCOBIOLOGY, 24 (10, SI). pp. 956-965.

Patra, Dhabaleswar and Mishra, Padmanabh and Vijayan, Mamannamana and Surolia, Avadhesha (2016) Negative Cooperativity and High Affinity in Chitooligosaccharide Binding by a Mycobacterium smegmatis Protein Containing LysM and Lectin Domains. In: BIOCHEMISTRY, 55 (1). pp. 49-61.

Patra, Dhabaleswar and Sharma, Alok and Chandran, Divya and Vijayan, Mamannamana (2011) Cloning, expression, purification, crystallization and preliminary X-ray studies of the mannose-binding lectin domain of MSMEG_3662 from Mycobacterium smegmatis. In: Acta Crystallographica Section F, 67 (Part 5). pp. 596-599.

Patra, Dhabaleswar and Srikalaivani, R and Misra, Ashish and Singh, DD and Selvaraj, M and Vijayan, M (2010) Cloning, expression, purification, crystallization and preliminary X-ray studies of a secreted lectin (Rv1419) from Mycobacterium tuberculosis. In: Acta Crystallographica Section F, 66 (Part 1). pp. 1662-1665.

Patra, SM and Vishveshwara, S (2000) Backbone cluster identification in proteins by a graph theoretical method. In: Biophysical Chemistry, 84 (1). pp. 13-25.

Patra, SM and Vishveshwara, S (1999) Classification of Polymer Structures by Graph Theory. In: International Journal of Quantum Chemistry, 71 (4). pp. 349-356.

Pattabiraman, N and Rao, Shashidhar N and Sasisekharan, V (1980) Is 3'-nucleotide rigid? In: Nature, 284 . pp. 187-189.

Pattabiraman, N and Rao, M Jagannatha (1982) Flexibility of the furanose ring in nucleic acids: a compilation of crystal data. In: International Journal of Biological Macromolecules, 4 (2). pp. 91-98.

Pattabiraman, N and Sasisekharan, V (1980) Description of ring puckering of furanose: An analytical approach. In: Pramana, 15 (5). pp. 399-405.

Pattanaik, Priyaranjan and Jain, Bimba and Ravindra, Gudihal and Gopi, Hosahudya N and Pal, Prajna P and Balaram, Hemalatha and Balaram, Padmanabhan (2003) Stage-specific profiling of Plasmodium falciparum proteases using an internally quenched multispecificity protease substrate. In: Biochemical and Biophysical Research Communications, 309 (4). pp. 974-979.

Pattanaik, Priyaranjan and Ravindra, Gudihal and Sengupta, Chandana and Maithal, Kapil and Balaram, Padmanabhan and Balaram, Hemalatha (2003) Unusual fluorescence of W168 in Plasmodium falciparum triosephosphate isomerase, probed by single-tryptophan mutants. In: European Journal of Biochemistry, 270 (4). pp. 745-756.

Paul, PKC and Ramakrishnan, C (1987) Stereochemical studies on cyclic peptides. XIII. Energy minimization studies on cyclic hexapeptides having hydrogen bonds. In: International Journal of Peptide & Protein Research, 29 (4). pp. 433-454.

Paul, A (2020) Sequencing the Rice Genome: Gateway to Agricultural Development. [Book Chapter]

Paul, A and Kumar, P and Surolia, A and Vijayan, M (2017) Biochemical and structural studies of mutants indicate concerted movement of the dimer interface and ligand-binding region of Mycobacterium tuberculosis pantothenate kinase. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 73 (11). pp. 635-643.

Paul, A and Mishra, A and Surolia, A and Vijayan, M (2013) Cloning, expression, purification, crystallization and preliminary X-ray studies of argininosuccinate lyase (Rv1659) from Mycobacterium tuberculosis. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (12). pp. 1422-1424.

Paul, A and Roychoudhury, A (2021) Go green to protect plants: repurposing the antimicrobial activity of biosynthesized silver nanoparticles to combat phytopathogens. In: Nanotechnology for Environmental Engineering, 6 (1).

Paul, A and Srinivasan, N (2020) Genome-wide and structural analyses of pseudokinases encoded in the genome of Arabidopsis thaliana provide functional insights. In: Proteins: Structure, Function and Bioinformatics .

Paul, A and Subhadarshini, S and Srinivasan, N (2022) Pseudokinases repurpose flexibility signatures associated with the protein kinase fold for noncatalytic roles. In: Proteins: Structure, Function and Bioinformatics, 90 (3). pp. 747-764.

Paul, Anju and Mishra, Archita and Surolia, Avadhesha and Vijayan, Mamannamana (2019) Structural studies on M-tuberculosis argininosuccinate lyase and its liganded complex: Insights into catalytic mechanism. In: IUBMB LIFE, 71 (5). pp. 643-652.

Paul, Bindu D and Kanhere, Aditi and Chakraborty, Atanu and Bansal, Manju and Nagaraja, Valakunja (2003) Identification of the Domains for DNA Binding and Transactivation Function of C Protein from Bacteriophage Mu. In: Proteins: Structure, Function, and Genetics, 52 (2). pp. 272-282.

Paul, DM and Chandrasekhar, G and Srinivasan, E and Chandra Sekar, P and Lavinya, BU and Rajasekaran, R (2023) LSDDB: Lysosomal Storage Disorder Database for Lysosomal Proteins and Their Single Amino-Acid Substitutions. In: Journal of Computational Biophysics and Chemistry .

Paul, PKC and Sukumar, M and Bardi, R and Piazzesi, AM and Valle, G and Toniolo, C and BaIaram, P (1986) Stereochemically Constrained Peptides. Theoretical and Experimental Studies on the Conformations of Peptides Containing 1-Aminocyclohexanecarboxylic Acid. In: Journal of the American Chemical Society, 108 (20). pp. 6363-6370.

Paul, PKC and Sukumar, M and Bardi, R and Piazzesi, AM and Valle, G and Toniolo, C and Balaram, Padmanabhan (1986) Stereochemically constrained peptides. Theoretical and experimental studies on the conformations of peptides containing 1-aminocyclohexane carboxylic acid. In: journal of the American chemical Society, 108 (20). pp. 6363-6370.

Paul, Ranajit and Mathew, MK and Narayanan, R and Balaram, P (1979) Fluorescent probe and NMR studies of the aggregation of bile salts in aqueous solution. In: Chemistry and Physics of Lipids, 25 (4). pp. 345-356.

Penmatsa, A (2022) A (Fab)ulous tool to block efflux. In: Nature Chemical Biology .

Perinbam, Kumar and Balaram, Hemalatha and Row, Tayur N Guru and Gopal, Balasubramanian (2017) Probing the influence of non-covalent contact networks identified by charge density analysis on the oxidoreductase BacC. In: PROTEIN ENGINEERING DESIGN & SELECTION, 30 (3, SI). pp. 265-272.

Petchiappan, A and Mahapa, A and Chatterji, D (2020) Cyclic dinucleotide signaling in mycobacteria. [Book Chapter]

Petchiappan, A and Naik, SY and Chatterji, D (2020) RelZ-mediated stress response in mycobacterium smegmatis: PGPP synthesis and its regulation. In: Journal of Bacteriology, 202 (2).

Petchiappan, Anushya and Chatterji, Dipankar (2017) Antibiotic Resistance: Current Perspectives. In: ACS Omega, 2 (10). pp. 7400-7409. ISSN 2470-1343

Petchiappan, Anushya and Chatterji, Dipankar (2017) Pup recycling regulates the proteasome. In: FEBS JOURNAL, 284 (12). pp. 1787-1789.

Piazzesi, AM and Bardi, R and Crisma, M and Banora, GM and Toniolo, C and Chauhan, VS and Kaur, P and Uma, K and Balaram, P (1991) Conformational restrictions of peptides via backbone modification: Solution and crystal-state analysis of Boc-L-Pro-DZPhe-Gly-NH2. In: Gazzetta Chimica Italiana, 121 (1). pp. 1-7.

Pidathala, S and Mallela, AK and Joseph, D and Penmatsa, A (2021) Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters. In: Nature Communications, 12 (1).

Pidugu, Lakshmi S and Maity, Koustav and Ramaswamy, Karthikeyan and Surolia, Namita and Suguna, Kaza (2009) Analysis of proteins with the `hot dog' fold: Prediction of function and identification of catalytic residues of hypothetical proteins. In: Bmc structural biology, 9 (37).

Pidugu, Lakshmi Swarnamukhi and Kapoor, Mili and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2004) Structural Basis for the Variation in Triclosan Affinity to Enoyl Reductases. In: Journal of Molecular Biology, 343 (1). pp. 147-155.

Pillai, CKS and Nandi, US (1973) Binding of Gold(III) with DNA. In: Biopolymers, 12 (6). pp. 1431-1435.

Poberaj, Igor and Rupnik, Marjan and Kreft, Marko and Sikdar, Sujit K and Zorec, Robert (2002) Modeling excess retrieval in rat melanotroph membrane capacitance records. In: Biophysical Journal, 82 (1). pp. 226-232.

Podder, SK and Surolia, A and Bachhawat, BK (1981) Dynamics of precipitin reaction: effect of the cholesterol & surface density of ganglioside, GM1, on the rate of reaction between lectin from Ricinus communis & liposome containing GM1. In: Indian Journal of Biochemistry & Biophysics, 18 (5). pp. 322-325.

Podobnik, Marjetka and Siddiqui, Nida and Rebolj, Katja and Nambi, Subhalaxmi and Merzel, Franci and Visweswariah, Sandhya S (2014) Allostery and Conformational Dynamics in cAMP-binding Acyltransferases. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 289 (23). pp. 16588-16600.

Polley, Anirban and Srivastava, Anand and Voth, Gregory A (2016) Activation of Integrin: A Multiscale Computational Study. In: BIOPHYSICAL JOURNAL, 110 (3, 1). 419A.

Prabantu, VM and Gadiyaram, V and Vishveshwara, S and Srinivasan, N (2023) Comparison of structural networks across homologous proteins. In: Proteins: Structure, Function and Bioinformatics .

Prabantu, VM and Naveenkumar, N and Srinivasan, N (2021) Influence of Disease-Causing Mutations on Protein Structural Networks. In: Frontiers in Molecular Biosciences, 7 .

Prabantu, VM and Tandon, H and Sandhya, S and Sowdhamini, R and Srinivasan, N (2023) The alteration of structural network upon transient association between proteins studied using graph theory. In: Proteins: Structure, Function and Bioinformatics .

Prabantu, VM and Yazhini, A and Srinivasan, N (2020) Manoeuvring protein functions and functional levels by structural excursions. [Book Chapter]

Prabantu, Vasam Manjveekar and Gadiyaram, Vasundhara and Vishveshwara, Saraswathi and Srinivasan, Narayanaswamy (2022) Understanding structural variability in proteins using protein structural networks. In: Current Research in Structural Biology, 4 . pp. 134-145. ISSN 2665928X

Prabhu, L and Upadhya, P and Ram, N and Nirodi, CS and Sultana, S and Vatsala, PG and Mani, SA and Rangarajan, PN and Surolla, A and Padmanaban, G (1995) A model for the transcriptional regulation of the CYP2BJ/B2 gene in rat liver. In: Proceedings Of The National Academy Of Sciences Of The United States Of America, 92 (21). pp. 9628-9632.

Prabu, JR and Rangannan, V and Chandra, N (2006) Carbohydrate-based drug design: Recognition fingerprints and their use in lead identification. In: Indian Journal Of Chemistry Section A-Inorganic Bio-Inorganic Physical Theoretical & Analytical Chemistry, 45 (1). pp. 77-92.

Prabu, J Rajan and Thamotharan, S and Khanduja, Jasbeer Singh and Alipio, Emily Zabala and Kim, Chang-Yub and Waldo, Geoffrey S and Terwilliger, Thomas C and Segelke, Brent and Lekin, Tim and Toppani, Dominique and Hung, Li-Wei and Yu, Minmin and Bursey, Evan Bursey and Muniyappa, K and Chandra, Nagasuma R and Vijayan, M (2006) Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination. In: Acta Crystallogr Sect F Struct Biol Cryst Commun, 62 (8). 731 -734.

Prabu, J Rajan and Thamotharan, S and Khanduja, Jasbeer Singh and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2009) Crystallographic and modelling studies on Mycobacterium tuberculosis RuvA: Additional role of RuvB-binding domain and inter species variability. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1794 (7). pp. 1001-1009.

Prabu, Moses M and Nagendra, HG and Stephen, Suresh and Vijayan, M (1996) X-Ray Studies on Crystalline Complexes involving Amino Acids and Peptides XXXI. Effect of chiarlity on Ionization State, Stoichiometry and Aggregation in the Complexes of Oxalic Acid with L- and DL-histidine. In: Journal of Biomolecular Structure and Dynamics, 14 (3).

Prabu, Moses M and Sankaranarayanan, R and Puri, KD and Sharma, V and Surolia, A and Vijayan, M and Suguna, K (1998) Carbohydrate specificity and quaternary association in basic winged bean lectin: X-ray analysis of the lectin at 2.5 angstrom resolution. In: Journal of Molecular Biology, 276 (4). pp. 787-796.

Prabu, Rajan J and Manjunath, GP and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2008) Functionally important movements in RecA molecules and filaments: studies involving mutation and environmental changes. In: Acta Crystallographica Section D - Biological Crystallography, 64 (Part 1). pp. 1146-1157.

Pradeep Kumar, Burma and Alok, Raj and SK, Brahmachari and Jayant, Deb K (1992) Genome analysis: A new approach for visualization of sequence organization in genomes. In: Journal of Biosciences, 17 (4). pp. 395-411.

Pradhan, A and Mishra, S and Basu, SM and Surolia, A and Giri, J and Srivastava, R and Panda, D (2021) Targeted nanoformulation of C1 inhibits the growth of KB spheroids and cancer stem cell-enriched MCF-7 mammospheres. In: Colloids and Surfaces B: Biointerfaces, 202 .

Pradhan, A and Mishra, S and Surolia, A and Panda, D (2021) C1 Inhibits Liquid-Liquid Phase Separation and Oligomerization of Tau and Protects Neuroblastoma Cells against Toxic Tau Oligomers. In: ACS Chemical Neuroscience, 12 (11). pp. 1989-2002.

Prajapati, RS and Lingaraju, GM and Bacchawat, Kiran and Surolia, Avadhesha and Varadarajan, Raghavan (2003) Thermodynamic Effects of Replacements of Pro Residues in Helix Interiors of Maltose-Binding Protein. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 863-871.

Prajapati, Ravindra S and Sirajuddin, Minhajuddin and Durani, Venuka and Sreeramulu, Sridhar and Varadarajan, Raghavan (2006) Contribution of Cation-\pi Interactions to Protein Stability. In: Biochemistry, 45 (50). pp. 15000-15010.

Prajapati, Ravindra Singh and Das, Mili and Sreeramulu, Sridhar and Sirajuddin, Minhajuddin and Srinivasan, Sankaranarayanan and Krishnamurthy, Vaishnavi and Ranjani, Ranganathan and Ramakrishnan, C and Varadarajan, Raghavan (2007) Thermodynamic Effects of Proline Introduction on Protein Stability. In: Proteins: Structure, Function, and Bioinformatics, 66 (2). pp. 480-491.

Prajapati, Ravindra Singh and Indu, S and Varadarajan, Raghavan (2007) Identification and thermodynamic characterization of molten globule states of periplasmic binding proteins. In: Biochemistry, 46 (36). pp. 10339-10352.

Prakash, B and Murthy, MRN (1997) Source and target enzyme signature in serine protease inhibitor active site sequences. In: Journal of Biosciences, 22 (5). pp. 555-565.

Prakash, Balaji and Selvaraj, S and Murthy, MRN and Sreerama, YN and Rao, D Rajagopal and Gowda, Lalitha R (1996) Analysis of the amino acid sequences of plant Bowman-Birk inhibitors. In: Journal of Molecular Evolution, 42 (5). pp. 560-569.

Prakash, Balaji and Murthy, MRN and Sreerama, YN and Rajagopal Rao, D and Gowda, Lalitha R (1997) Studies on simultaneous nhibition of trypsin and chymotrypsin by horsegram Bowman-Birk inhibitor. In: Journal of Biosciences, 22 (5). pp. 545-554.

Prakash, Tulika and Sandhu, Kuljeet Singh and Singh, Nitin Kumar and Bhasin, Yasha and Ramakrishnan, C and Brahmachari, Samir K (2007) Structural assessment of glycyl mutations in invariantly conserved motifs. In: Proteins: Structure, Function, and Bioinformatics, 69 (3). 617- 632.

Pramanick, I and Sengupta, N and Mishra, S and Pandey, S and Girish, N and Das, A and Dutta, S (2021) Conformational flexibility and structural variability of SARS-CoV2 S protein. In: Structure, 29 (8). 834-845.e5.

Prasad, BV Venkataram and Balaram, H and Balaram, P (1984) Acyclic peptides as conformational models Crystal structure of Boc-Aib-Leu-Pro-NHMe± 2H2O. In: International journal of peptide and protein, 24 (2). pp. 135-140.

Prasad, BV Venkatram and Chandrasekaran, R (1977) Conformation of polypeptide-chains containing both l-residues and D-residues .2. Double-helical structures of poly-ld-peptides. In: International Journal of Peptide and Protein Research, 10 (2). 129 -138.

Prasad, BV Venkataram and Balaram, Hemalatha and Balaram, P (1982) Type II beta-turn conformation of pivaloyl-L-prolyl-a-aminoiso-butyryl-N-methylamide: Theoretical, spectroscopic and X-ray studies. In: Biopolymers, 21 (7). pp. 1261-1273.

Prasad, BV Venkataram and Balaram, Hemalatha and Balaram, P (1982) Type II beta-turn conformation of pivaloyl-L-prolyl-alpha-aminoisobutyryl-N-methylamide: Theoretical, spectroscopic, and X-ray studies. In: Biopolymers, 27 (7). pp. 1261-1273.

Prasad, BV Venkataram and Balaram, Padmanabhan (1982) X-Pro peptides. A theoretical study of the hydrogen bonded conformations of (alpha-aminoisobutyryl-L -prolyl)n sequences. In: International Journal of Biological Macromolecules, 4 (2). pp. 99-102.

Prasad, BV Venkataram and Ravi, A and Balaram, Padmanabhan (1981) Molecular structure of a cyclic tetrapeptide disulfide. A novel 310 helical conformation with an S-S bridge. In: Biochemical and Biophysical Research Communications, 103 (4). pp. 1138-1144.

Prasad, BV Venkataram and Sasisekharan, V (1979) A Case Study of the Conformation of Poly(alpha-aminoisobutyric acid): alpha- or 310-Helix. In: Macromolecule, 12 (6). pp. 1107-1110.

Prasad, BV Venkataram and Shamala, N and Nagaraj, R and Chandrasekaran, R and Balaram, P (1979) The crystal and molecular structure of benzyloxycarbonyl-a-amino-isobutyryl-L-prolyl-methylamide. The observation of an X2-Pro3 Type III b-turn. In: Biopolymers, 18 (7). 1635 -1646.

Prasad, BV Venkatram and Balaram, P (1982) X-Pro peptides. A theoretical study of the hydrogen bonded conformations of (a-aminoisobutyryl-L -prolyl)n sequences. In: International Journal of Biological Macromolecules, 4 (2). pp. 99-102.

Prasad, BVLS and Suguna, K (2003) Effect of pH on the structure of rhizopuspepsin. In: Acta Crystallographica Section D: Biological Crystallography, 59 (10). pp. 1755-1761.

Prasad, BVLS and Suguna, K (2002) Role of water molecules in the structure and function of aspartic proteinases. In: Acta Crystallographica Section D: Biological Crystallography, 58 (2). pp. 250-259.

Prasad, BVV and Sudha, TS and Balaram, V (1982) Molecular structure of Boc-Aib-Aib-Phe-Met-NH2·DMSO. A fragment of a biologically active enkephalin analogue. In: Perkin Transactions 1 (2). pp. 417-421.

Prasad, GS and Vijayan, M (1991) X-ray studies on crystalline complexes involving amino acids and peptides. XXI. Structure of a (1:1) complex between L-phenylalanine and D-valine. In: Acta Crystallographica Section C, 47 (12). pp. 2603-2606.

Prasad, GS and Vijayan, M (1991) X-ray studies on crystalline complexes involving amino acids and peptides. XXIII. Variability in ionization state, conformation and molecular aggregation in the complexes of succinic acid with DL- and L-lysine. In: Acta Crystallographica Section B, B47 (6). pp. 927-935.

Prasad, GS and Vijayan, M (1993) X-ray studies on crystalline complexes involving amino acids and peptides. XXV. Structures of DL-proline hemisuccinic acid and glycyl-L-histidinium semisuccinate monohydrate and a comparative study of amino-acid and peptide complexes of succinic acid. In: Acta Crystallographica Section B, 49 (Part 2). pp. 348-356.

Prasad, S and Mitra, S and Subramanian, E and Velmurugan, D and Rao, RB and Balaram, P (1994) Coexistence of Folded and Extended Conformations of a Tripeptide Containing alpha,alpha-Di-n-propylglycine in Crystals. In: Biochemical and Biophysical Research Communications, 198 (2). pp. 424-430.

Prasad, Sridhar G and Vijayan, M (1993) X-ray Ray Studies on Crystalline Complexes Involving Amino Acids and Peptides. XXIV. Different Ionization States and Novel Aggregation Patterns in the Complexes of Succinic Acid with DL- and L-Histidine. In: Biopolymers, 33 (2). pp. 283-292.

Prasad, Sridhar G and Vijayan, M (1990) X-ray studies on crystalline complexes involving amino acids and peptides XIX. Effects of change in chirality in the complexes of succinic acid with dl- and l-arginine. In: International Journal of Peptide & Protein Research, 35 (4). pp. 357-364.

Prasad, Sudhanand and Balaji, Rao R and Bergstrand, Hakan and Lundquist, Britta and Becker, Elmer L and Balaram, P (1996) Conformation-activity correlations for chemotactic tripeptide analogs incorporating dialkyl residues with linear and cyclic alkyl sidechains at position 2. In: International Journal Of Peptide And Protein Research, 48 (04). pp. 312-318.

Prasad, Venkataram BV and Balaram, Hemalatha and Balaram, P (1982) Type II \beta-Turn Conformation of Pivaloyl-L-Prolyl-\alpha-Aminoisobutyryl-N-Methylamide: Theoretical, Spectroscopic, and X-Ray Studies. In: Biopolymers, 21 (7). pp. 1261-1273.

Prasad, Venkataram BV and Shamala, N and Nagaraj, R and Balaram, P (1980) The Crystal Structure of Benzyloxycarbonyl-${(\alpha-aminoisobutyryl)}_2$-L-Alanyl Methyl Ester. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 36 (1). pp. 107-110.

Prasad, Venkataram BV and Shamala, N and Nagaraj, R and Chandrasekaran, R and Balaram, P (1979) Crystal and Molecular Structure of Benzyloxycarbonyl-\alpha-Aminoisobutyryl-L-Prolyl Methylamide: The Observation of an $X_2-{Pro}_3$ Type III \beta-Turn. In: Biopolymers, 18 (7). pp. 1635-1646.

Prasad, Venkataram BV and Sudha, Subrahmanyam T and Balaram, Padmanabhan (1983) Molecular structure of Boc-Aib-Phe-Aib-Met-$NH_2$.DMSO. A fragment of a biologically active enkephalin analog. In: Journal of the Chemical Society: Perkin Transactions 1: Organic and Bio-Organic Chemistry (2). pp. 417-421.

Prasanna, V and Gopal, B and Murthy, MRN and Santi , DV and Balaram, Padmanabhan (1999) Effect of amino acid substitutions at the subunit interface on the stabiity and aggregation properties of a dimeric protein: role of Arg 178 and Arg 218 at the dimer interface of thymidylate synthase. In: Proteins: Structure, Function, and Bioinformatics, 34 (3). pp. 356-368.

Prasanna, Variath and Bhattacharjya, Surajit and Balaram, Padmanabhan (1998) Synthetic Interface Peptides as Inactivators of Multimeric Enzymes: Inhibitory and Conformational Properties of Three Fragments from Lactobacillus casei Thymidylate Synthase. In: Biochemistry, 37 (19). pp. 6883-6893.

Pratap, JV and Bradbrook, GM and Reddy, GB and Surolia, A and Raftery, J and Helliwell, JR and Vijayan, M (2001) The combination of molecular dynamics with crystallography for elucidating protein–ligand interactions: a case study involving peanut lectin complexes with T-antigen and lactose. In: Acta Crystallographica Section D, 57 (11). pp. 1584-1594.

Pratap, JV and Jeyaprakash, Arockia A and Rani, Geetha P and Sekar, K and Surolia, A and Vijayan, M (2002) Crystal Structures of Artocarpin, a Moraceae Lectin with Mannose Specificity, and its Complex with Methyl-alpha-D-mannose: Implications to the Generation of Carbohydrate Specificity. In: Journal of Molecular Biology, 317 (2). pp. 237-247.

Pratap, JV and Ravishankar, R and Vijayan, M (2000) X-ray studies on crystalline complexes involving amino acids and peptides. XXXV. Invariance and variability in amino acid aggregation in the complexes of maleic acid with L-histidine and L-lysine. In: Acta Crystallographica Section B, 56 . pp. 690-696.

Preininger, Doris and Stiegler, Michael J and Gururaja, KV and Vijayakumar, SP and Torsekar, Varun R and Sztatecsny, Marc and Hödl, Walter (2013) Getting a kick out of it: multimodal signalling during male–male encounters in the foot-flagging frog Micrixalus aff. saxicola from the Western Ghats of India. In: Current Science, 105 (12). pp. 1735-1740.

Priya, Amulya and Sugatha, Jini and Parveen, Sameena and Lacas-Gervais, Sandra and Raj, Prateek and Gilleron, Jerome and Datta, Sunando (2017) Essential and selective role of SNX12 in transport of endocytic and retrograde cargo. In: JOURNAL OF CELL SCIENCE, 130 (16). pp. 2707-2721.

Pudi, Renuka and Abhiman, Saraswathi and Srinivasan, Narayanaswamy and Das, Saumitra (2003) Hepatitis C Virus Internal Ribosome Entry Site-mediated Translation Is Stimulated by Specific Interaction of Independent Regions of Human La Autoantigen. In: Journal of Biological Chemistry, 278 (14). pp. 12231-12240.

Pugalenthi, G and Shameer, K and Srinivasan, N and Sowdhamini, R (2006) HARMONY: a server for the assessment of protein structures. In: Nucleic Acids Research, 34 . W231-W234.

Pugalenthi, G and Shameer, K and Srinivasan, N and Sowdhamini, R (2006) HARMONY: a server for the assessment of protein structures. In: Nucleic Acids Research, 34 (Sp. Is). W231-W234.

Pulla Rao, Ch and Balaram, Padmanabhan and Rao, CNR (1983) An infrared spectroscopic study of C7 intramolecular hydrogen bonds in peptides. In: Biopolymers, 22 (9). pp. 2091-2104.

Purana, Kasturi Lahiri and Raghothama, S and Balaram, P (1987) A H-1-NMR STUDY OF BILIRUBIN IX-ALPHA SOLUBILIZATION BY CHOLATE MICELLES - APPLICATION OF NUCLEAR OVERHAUSER EFFECTS. In: Biochimica et Biophysics Acta, 922 (1). pp. 67-77.

Puranam, Kasturi L and Balaram, P (1987) Solubilization of bilirubin by cholate micelles. Spectroscopic and gel permeation studies. In: Proceedings of the Indian Academy of Sciences - Chemical Sciences, 98 (5-6). pp. 453-468.

Puranam, Kasturi L and Raghothama, S and Balaram, P (1987) A proton-NMR study of bilirubin IX\alpha solubilization by cholate micelles: application of nuclear Overhauser effects. In: Biochimica et Biophysica Acta, Lipids and Lipid Metabolism, 922 (1). pp. 67-77.

Puranam, Kasturi Lahiri and Balaram, P (1987) Spectroscopic studies on the interaction of bilirubin with symmetrical alkyl diamines. In: Journal of Biosciences, 11 (1-4). pp. 485-493.

Puri, KD and Khan, MI and Gupta, D and Surolia, A (1993) Thermodynamic and kinetic studies on the mechanism of binding of methylumbelliferyl galactosides to the basic agglutinin from winged bean (Psophocarpus tetragonolobus). In: Journal of Biological Chemistry, 268 (22). pp. 16378-16387.

Puri, KD and Surolia, Avadhesha (1994) Amino acid sequence of the winged bean (Psophocarpus tetragonolobus) basic lectin. Adenine binding and identification of the active-site tryptophan residue. In: Journal of Biological Chemistry, 269 (49). pp. 30917-30926.

Puri, Kamal Deep and Gopalakrishnan, B and Avadhesha, Surolia (1992) Carbohydrate binding specificity of the $T_n$-antigen binding lectin from Vicia villosa seeds $(VVLB_4)$. In: FEBS Letters, 312 (2-3). pp. 208-212.

Puri, Kamal Deep and Surolia, Avadhesha (1994) Thermodynamics of lectin-sugar interaction: Binding of sugars to winged bean (Psophocarpus tetragonolobus) basic agglutinin (WBAI). In: International Conference on Thermodynamics of Solutions and Biological Systems, JAN 03-06, 1993, NEW DELHI, INDIA.

Purushothaman, SS and Park, HS and Cleary, PP (2004) Promotion of fibronectin independent invasion by C5a peptidase into epithelial cells in group A Streptococcus. In: Indian Journal of Medical Research, 119 . pp. 44-47.

Purushothaman, Sudha and Annamalai, Karthikeyan and Anil, Tyagi K and Surolia, Avadhesha (2011) Diversity in Functional Organization of Class I and Class II Biotin Protein Ligase. In: PLos One, 6 (3).

Purushothaman, Sudha and Gupta, Garima and Srivastava, Richa and Ramu, Vasanthakumar Ganga and Surolia, Avadhesha (2008) Ligand Specificity of Group I Biotin Protein Ligase of Mycobacterium tuberculosis. In: PLoS ONE, 3 (5).

Purwar, Mansi and Pokorski, Jonathan K and Singh, Pranveer and Bhattacharyya, Sanchari and Arendt, Heather and DeStefano, Joanne and La Branche, Celia C and Montefiori, David C and Finn, MG and Varadarajan, Raghavan (2018) Design, display and immunogenicity of HIV1 gp120 fragment immunogens on virus-like particles. In: VACCINE, 36 (42). pp. 6345-6353.

Q

Quigley, J and Misquith, S and Surolia, A and Srimal, S and Armstrong, P (1994) Preliminary investigation of the molecular basis for the functional differences between the two pentraxins limulin and C-reactive protein from the plasma of the American horseshoe crab, Limulus polyphemus. In: General Scientific Meeting of the Marine-Biological-Laboratory, AUG 15-17, 1994, WOODS HOLE.

R

R, Sankararamakrishnan and Saraswathi, Vishveshwara (1992) Geometry of proline-containing alpha-helices in proteins. In: International Journal of Peptide & Protein Research, 39 (4). pp. 356-363.

Raghava, Smita and Barua, Bipasha and Singh, Pradeep K and Das, Mili and Madan, Lalima and Bhattacharyya, Sanchari and Bajaj, Kanika and Gopal, B and Varadarajan, Raghavan and Gupta, Munishwar N (2008) Refolding and simultaneous purification by three-phase partitioning of recombinant proteins from inclusion bodies. In: Protein Science, 17 (11). pp. 1987-1997.

Raghava, Smita and Aquil, Samina and Bhattacharyya, Sanchari and Varadarajan, Raghavan and Gupta, Munishwar N (2008) Strategy for purifying maltose binding protein fusion proteins by affinity precipitation. In: Journal of Chromatography A, 1194 (1). pp. 90-95.

Raghavan, Mohan and Amrutur, Bharadwaj and Narayanan, Rishikesh and Sikdar, Sujit Kumar (2013) Synconset Waves and Chains: Spiking Onsets in Synchronous Populations Predict and Are Predicted by Network Structure. In: PLOS ONE, 8 (10).

Raghavan, Mohan and Amrutur, Bharadwaj and Srinivas, Kalyan V and Sikdar, Sujit K (2012) A study of epileptogenic network structures in rat hippocampal cultures using first spike latencies during synchronization events. In: PHYSICAL BIOLOGY, 9 (5).

Raghavan, Mohan and Amrutur, Bharadwaj and Srinivas, Kalyan V and Sikdar, SujitK (2012) A study of epileptogenic network structures in rat hippocampal cultures using first spike latencies during synchronization events. In: PHYSICAL BIOLOGY, 9 (5).

Raghavan, SS and Iqbal, S and Ayyadurai, N and Gunasekaran, K (2022) Insights in the structural understanding of amyloidogenicity and mutation-led conformational dynamics of amyloid beta (AÎ²) through molecular dynamics simulations and principal component analysis. In: Journal of Biomolecular Structure and Dynamics, 40 (12). pp. 5577-5587.

Raghavan, Sowmya and Burma, Pradeep K and Brahmachari, Samir K (1997) Positional Preferences of Polypurine/Polypyrimidine Tracts in Saccharomyces cerevisiae Genome: Implications for cis Regulation of Gene Expression. In: Journal of Molecular Evolution, 45 (5). pp. 485-498.

Raghavan, Sowmya and Hariharan, Ramesh and Brahmachari, Samir K (2000) Polypurine.polypyrimidine sequences in complete bacterial genomes: preference for polypurines in protein-coding regions. In: GENE, 242 (1-2). pp. 275-283.

Raghavender, Upadhyayula Surya and Aravinda, Subrayashastry and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2010) Peptide hairpin nucleation with the obligatory Type I' beta-turn Aib-(D)Pro segment. In: Organic and Biomolecular Chemistry, 8 (14). pp. 3133-3135.

Raghavender, Upadhyayula S and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Kantharaju, * and Rai, Rajkishor and Balaram, Padmanabhan (2009) Characterization of Water Wires inside Hydrophobic Tubular Peptide Structures. In: Journal of the American chemical society, 131 (42). pp. 15130-15132.

Raghavender, Upadhyayula Surya and Chatterjee, Bhaswati and Saha, Indranil and Rajagopal, Appavu and Shamala, Narayanaswamy and Balaram, Padmanabhan (2011) Entrapment of a Water Wire in a Hydrophobic Peptide Channel with an Aromatic Lining. In: Journal of Physical Chemistry B, 115 (29). pp. 9236-9243.

Raghavendra, K and Ananthanarayanan, VS (1981) Beta-structure of polypeptides in non-aqueous solutions. I. Spectral characteristics of the polypeptide backbone. In: International Journal of Peptide & Protein Research, 17 (4). pp. 412-419.

Raghavendra, K and Ananthanarayanan, VS (1981) Beta-structure of polypeptides in non-aqueous solutions. II. Side-chain orientation. In: International Journal of Peptide & Protein Research, 17 (4). pp. 420-425.

Raghavendra, K and Sasisekharan, V (1979) Conformational analysis of the right-hand twisted antiparallel β-Structure. In: International Journal of Peptide & Protein Research, 14 (4). pp. 326-338.

Raghothama, S and Chaddha, M and Balaram, P (1996) NMR Analysis of a Conformational Transition in an Acyclic Peptide. Model System for Studying Helix Unfolding. In: Journal of Physical Chemistry, 100 (50). pp. 19666-19671.

Raghothama, S and Chaddha, Manjula and Banumathi, S and Ravikumar, Krishnan and Velmurugan, D and Balaram, P (1998) Conformational Interconversions in Peptide beta-Turns: Discrimination Between Enantiomeric Conformations by Chiral Perturbation. In: Biopolymers, 45 (3). pp. 191-202.

Raghothama, S and Ramakrishnan, C and Balasubramanian, D and Balaram, P (1989) Conformational Analysis of Cyclolinopeptide A, a Cyclic Nonapeptide: Nuclear Overhauser Effect and Energy Minimization Studies. In: Biopolymers, 28 . pp. 573-588.

Raghothama, Srinivasa Rao and Awasthi, Satish Kumar and Balaram, Padmanabhan (1998) Beta-Hairpin nucleation by Pro-Gly beta-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide. In: Journal of Chemical Society, Perkin Transactions 2 (2). pp. 137-144.

Raghunandanan, Sajith and Ramachandran, Ranjit and Gomez, Roshna Lawrence and Devanarayanan, Sivasankar and Bommakanti, Akhila and Kondapi, Anand Kumar and Varadarajan, Raghavan and Kumar, Ramakrishnan Ajay (2018) Rv0474 is a copper-responsive transcriptional regulator that negatively regulates expression of RNA polymerase subunit in Mycobacterium tuberculosis. In: FEBS JOURNAL, 285 (20). pp. 3849-3869.

Rahaman, Abdur and Srinivasan, N and Shamala, N and Shaila, MS (2003) The Fusion Core Complex of the Peste des Petits Ruminants Virus is a Six-helix Bundle Assembly. In: Biochemistry, 42 (4). pp. 922-931.

Rahaman, Abdur and Srinivasan, Naryanaswamy and Shamala, Narayanaswamy and Shaila, Melkote Subbarao (2004) Phosphoprotein of the Rinderpest Virus Forms a Tetramer through a Coiled Coil Region Important for Biological Function. In: Journal of Biological Chemistry, 279 (22). pp. 23606-23614.

Rai, A and Yelamanchi, SD and Radotra, BD and Gupta, SK and Mukherjee, KK and Tripathi, M and Chhabra, R and Ahuja, CK and Kumar, N and Pandey, A and Korbonits, M and Dutta, P and Gaston-Massuet, C (2022) Phosphorylation of β-catenin at Serine552 correlates with invasion and recurrence of non-functioning pituitary neuroendocrine tumours. In: Acta Neuropathologica Communications, 10 (1).

Rai, Ankit and Gupta, Tilak Kumar and Kini, Sudarshan and Kunwar, Ambarish and Surolia, Avadhesha and Panda, Dulal (2013) CXI-benzo-84 reversibly binds to tubulin at colchicine site and induces apoptosis in cancer cells. In: BIOCHEMICAL PHARMACOLOGY, 86 (3). pp. 378-391.

Rai, Ankit and Surolia, Avadhesha and Panda, Dulal (2012) An Antitubulin Agent BCFMT Inhibits Proliferation of Cancer Cells and Induces Cell Death by Inhibiting Microtubule Dynamics. In: PLOS ONE, 7 (8). e44311.

Rai, Rajkishor and Raghothama, Srinivasarao and Balaram, Padmanabhan (2006) Design of a Peptide Hairpin Containing a Central Three-Residue Loop. In: Journal of American Chemical Society, 128 (8). 2675 -2681.

Rai, Rajkishor and Raghothama, Srinivasarao and Sridharan, Rajagopalan and Balaram, Padmanabhan (2006) Tuning the $\beta$-Turn Segment in Designed Peptide $\beta$-Hairpins: Construction a Stable Type I' $\beta$-Turn Nucleus and Hairpin-Helix Transition Promoting Segments. In: Biopolymers, 88 (3). pp. 350-361.

Rai, Rajkishor and Raghothama, Srinivasarao and Sridharan, Rajagopalan and Balaram, Padmanabhan (2007) Tuning the beta-turn segment in designed peptide beta-hairpins: Construction of a stable type I ' beta-turn nucleus and hairpin-helix transition promoting segments. In: Biopolymers, 88 (3). 350 -361.

Rai, Rajkishor and Vasudev, Prema G and Ananda, Kuppanna and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Karle, Isabella L and Balaram, Padmanabhan (2007) Hybrid Peptides: Expanding the \beta Turn in Peptide Hairpins by the Insertion of \beta-, \gamma-, and \delta-Residues. In: Chemistry - A European Journal, 13 (20). pp. 5917-5926.

Rai, Rajkishor and Aravinda, S and Kanagarajadurai, K and Raghothama, S and Shamala, Narayanaswamy and Balaram, Padmanabhan (2006) Diproline Templates as Folding Nuclei in Designed Peptides. Conformational Analysis of Synthetic Peptide Helices Containing Amino Terminal Pro-Pro Segments. In: Journal of the American Chemical Society, 128 (24). pp. 7916-7928.

Raina, Varshiesh and Gupta, Sarika and Yadav, Saurabh and Surolia, Avadhesha (2013) Simvastatin Induced Neurite Outgrowth Unveils Role of Cell Surface Cholesterol and Acetyl CoA Carboxylase in SH-SY5Y Cells. In: PLOS ONE, 8 (9).

Raj, Antony P and Balaram, P (1985) Conformational Effects on Peptide Aggregation in Organic Solvents: Spectroscopic Studies of Two Chemotactic Tripeptide Analogs. In: Biopolymers, 24 (7). pp. 1131-1146.

Raj, Antony P and Das, Manoj K and Balaram, P (1988) Conformations and Mitochondrial Uncoupling Activity of Synthetic Emerimicin Fragments. In: Biopolymers, 27 (4). pp. 683-701.

Raj, P and Karthik, S and Arif, SM and Varshney, U and Vijayan, M (2020) Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1. In: Acta Crystallographica Section D: Structural Biology, 76 . pp. 982-992.

Raj, P and Selvam, K and Roy, K and Mani Tripathi, S and Kesharwani, S and Gopal, B and Varshney, U and Sundriyal, S (2022) Identification of a new and diverse set of Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) inhibitors using structure-based virtual screening: Experimental validation and molecular dynamics studies. In: Bioorganic and Medicinal Chemistry Letters, 76 .

Raj, R and Nadig, S and Patel, T and Gopal, B (2020) Structural and biochemical characteristics of two Staphylococcus epidermidis RNase J paralogs RNase J1 and RNase J2. In: Journal of Biological Chemistry, 295 (49). pp. 16863-16876.

Raj, Rishi and Mitra, Sharmistha and Gopal, Balasubramanian (2018) Characterization of Staphylococcus epidermidis Polynucleotide phosphorylase and its interactions with ribonucleases RNase J1 and RNase J2. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 495 (2). pp. 2078-2084.

Raja, S and Paul, A and Raghavan, S and Narayanan, S and Shee, S and Singh, A and Varshney, U and Gopal, B and Vijayan, M (2022) Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition. In: Current Science, 122 (3). pp. 281-289.

Rajagopal, Malini and Rao, Kekambareswara and Ayyer, Jayalekshmy and Sasisekharan, V (1987) Synthesis of a distamycin analog: tris(m-benzamido) compound. In: Indian Journal of Chemistry, Sect. B: Organic Chemistry including Medicinal Chemistry, 26 (11). pp. 1021-1024.

Rajagopal, Appavu and Aravinda, Subrayashastry and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2011) Chain Length Effects on Helix-Hairpin Distribution in Short Peptides with Aib-(D)Ala and Aib-Aib Segments. In: Biopolymers, 96 (6). pp. 744-756.

Rajagopal, Sathyapriya and Vishveshwara, Saraswathi (2005) Short hydrogen bonds in proteins. In: FEBS Journal, 272 (8). pp. 1819-1832.

Rajagopalan, M and Rao, KE and Ayyer, J and Sasisekharan, V (1987) Synthesis Of A Distamycin Analog - Tris(Meta-Benzamido) Compound. In: Indian Journal of Chemistry - Section B: Organic and Medicinal Chemistry, 26 (11). pp. 1021-1024.

Rajagopalan, Malini and Ayyer, Jayalekshmy and Sasisekharan, V (1985) Interaction of non-intercalative drugs with DNA: Distamycin analogues. In: Journal of Biosciences, 7 (1). pp. 27-32.

Rajagopalan, Malini and Brahmachari, Samir K and Sasisekharan, V and Srivastava, Rakesh (1983) X-Ray diffraction studies on Mycobacterium smegmatis DNA. In: Biopolymers, 22 (7). pp. 1633-1635.

Rajagopalan, Malini and Gupta, Goutam and Sasisekharan, V (1983) Base-base interactions in nucleic acids containing A-T base pairs Structure of poly[d(A—T)]. In: FEBS Letters, 159 (2). pp. 285-289.

Rajagopalan, Malini and Gupta, Goutam and Sasisekharan, V (1983) Base-base interactions in nucleic acids containing A-T base pairs: Structure of poly[d(A-T)]. In: FEBS Letters, 159 (1-2). pp. 285-289.

Rajan, Rahul and Awasthi, Satish Kumar and Bhattacharjya, Surajit and Balaram, P (1997) ‘‘Teflon-Coated Peptides’’: Hexafluoroacetone Trihydrate as a Structure Stabilizer for Peptides. In: Biopolymers, 42 (2). pp. 125-128.

Rajan, Rahul and Balaram, P (1996) A model for the interaction of trifluoroethanol with peptides and proteins. In: International Journal of Peptide And Protein Research, 48 (04). pp. 328-336.

Rajappa, S and Chatterji, Dipankar and Balakrishnan, V (2005) Relevance of mathematics to other branches of science. In: Current Science, 88 (7). p. 1021.

Rajaram, V and Bhavani, BS and Kaul, Purnima and Prakash, V and Rao, Appaji N and Savithri, HS and Murthy, MRN (2007) Structure determination and biochemical studies on Bacillus stearothermophilus E53Q serine hydroxymethyltransferase and its complexes provide insights on function and enzyme memory. In: FEBS Journal, 274 (16). pp. 4148-4160.

Rajaram, V and Prasad, K and Prasuna, Ratna P and Ramachandra, N and Bharath, SR and Savithri, HS and Murthy, MRN (2006) Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of the biosynthetic N-acetylornithine aminotransferases from Salmonella typhimurium and Escherichia coli. In: Acta Crystallographica Section F, 62 (10). pp. 980-983.

Rajaram, V and Prasuna, Ratna R and Savithri, HS and Murthy, MRN (2008) Structure of biosynthetic N-acetylornithine aminotransferase from Salmonella typhimurium: Studies on substrate specificity and inhibitor binding. In: Proteins: Structure, Function, and Bioinformatics, 70 (2). 429 -441.

Rajaram, Venkatesan and Rajaganapathi, Jagannathan and Khan, Farida and Savithri, Handanahal S and Murthy, Mathur RN (2003) Crystallization and preliminary X-ray diffraction studies on recombinant diaminopropionate ammonia lyase from Escherichia coli. In: Acta Crystallographica Section D: Biological Crystallography, 59 (Part 9). pp. 1668-1669.

Rajasekaran, Deepa and Sastri, Narayan P and Marathahalli, Jagannath R and Indi, Shanthinath S and Pamidimukkala, Kiranmayee and Suguna, Kaza and Rao, Durga C (2008) The flexible C terminus of the rotavirus non-structural protein NSP4 is an important determinant of its biological properties. In: Journal of General Virology, 89 . pp. 1485-1496.

Rajavel, M and Gopal, B (2010) Analysis of multiple crystal forms of Bacillus subtilis BacB suggests a role for a metal ion as a nucleant for crystallization. In: Acta Crystallographica Section D, 66 (Part 5). pp. 635-839.

Rajavel, M and Gopal, B (2006) Crystallization and preliminary X-ray diffraction studies on the bicupin YwfC from Bacillus subtilis. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 62 (12). pp. 1259-1262.

Rajavel, M and Warrier, Thulasi and Gopal, B (2006) Old Fold in a New X-Ray Diffraction Dataset? Low-Resolution Molecular Replacement Using Representative Structural Templates Can Provide Phase Information. In: Proteins: Structure, Function, and Bioinformatics, 64 (4). pp. 923-930.

Rajavel, Malligarjunan and Mitra, Ashima and Gopal, Balasubramanian (2009) Role of Bacillus subtilis BacB in the Synthesis of Bacilysin. In: Journal of biological chemistry, 284 (46). pp. 31882-31892.

Rajavel, Malligarjunan and Perinbam, Kumar and Gopal, B (2013) Structural insights into the role of Bacillus subtilis YwfH (BacG) in tetrahydrotyrosine synthesis. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 69 (3). pp. 324-332.

Rajdev, Priya and Chatterji, Dipankar (2007) Thermodynamic and Spectroscopic Studies on the Nickel Arachidate-RNA Polymerase Langmuir-Blodgett Monolayer. In: Langmuir, 23 (4). pp. 2037-2041.

Rajendran, D and Mitra, S and Oikawa, H and Madhurima, K and Sekhar, A and Takahashi, S and Naganathan, AN (2022) Quantification of Entropic Excluded Volume Effects Driving Crowding-Induced Collapse and Folding of a Disordered Protein. In: Journal of Physical Chemistry Letters, 13 (13). pp. 3112-3120.

Rajendran, V and Kandasamy, S and Gupta, A and Asaithambi, K and Runthala, A and Selvaraj, J and Channappa, SK (2023) In Silico Identification of Potential Antivirals Against SARS-CoV-2 Main Protease and RBD of Spike Protein: A Drug Repurposing Approach. [Book Chapter]

Rajesh, RP and Franklin, Jayaseelan B and Badsha, Iffath and Arjun, P and Jain, Ruchi P and Vignesh, M S and Kannan, Rajesh R (2019) Proteome Based de novo Sequencing of Novel Conotoxins from Marine Molluscivorous Cone Snail Conus amadis and Neurological Activities of Its Natural Venom in Zebrafish Model. In: PROTEIN AND PEPTIDE LETTERS, 26 (11). pp. 819-833.

Rajesh, Rajaian P and Franklin, Jayaseelan B (2018) Identification of Conotoxins with Novel Odd Number of Cysteine Residues from the Venom of a Marine Predatory Gastropod Conus leopardus Found in Andaman Sea. In: PROTEIN AND PEPTIDE LETTERS, 25 (11). pp. 1035-1040.

Rajesh, Rajaian Pushpabai (2015) Novel M-Superfamily and T-Superfamily conotoxins and contryphans from the vermivorous snail Conus figulinus. In: JOURNAL OF PEPTIDE SCIENCE, 21 (1). pp. 29-39.

Rajesh, Rajaian Pushpabai and Annappan, Murugan (2015) Anticancer Effects of Brominated Indole Alkaloid Eudistomin H from Marine Ascidian Eudistoma viride Against Cervical Cancer Cells (HeLa). In: ANTICANCER RESEARCH, 35 (1). pp. 283-293.

Rajesh, S and Gokhale, RS and Sanjay, Agarwalla and Francis, VS and Santi, DV and Balaram, P (1994) Thermal stabilization of thymidylate synthase by engineering two disulfide bridges across the dimer interface. In: Journal of Molecular Biology, 235 (1). pp. 89-94.

Rajesh, S Gokhale and Soumya, S Ray and Hemalatha, Balaram and Balaram, P (1999) Unfolding of Plasmodium falciparum Triosephosphate Isomerase in Urea and Guanidinium Chloride: Evidence for a Novel Disulfide Exchange Reaction in a Covalently Cross-Linked Mutant†. In: Biochemistry, 38 (1). pp. 423-431.

Rajkishor, Rai and Balaram, Padmanabhan (2007) Control of Polypeptide Chain Folding and Assembly. In: Wiley-VCH Verlag GmbH & Co. KGaA .

Rajkumar, R and Prakash, S and Archunan, G and Sowdhamini, R (2010) Primary Structural Documentation of the Major Urinary Protein of the Indian Commensal Rat (Rattus rattus) Using a Proteomics Platform. In: Protein and Peptide Letters, 17 (4). pp. 449-457.

Rajmani, RS and Surolia, A (2024) Antimycobacterial and healing effects of Pranlukast against MTB infection and pathogenesis in a preclinical mouse model of tuberculosis. In: Frontiers in Immunology, 15 .

Raju, N and Trommer, WE and Varadarajan, R and Pause, VG and Beena, K (2004) Conformational changes and bound state conformation of maltose binding protein (MBP) upon interaction with the chaperone SecB: ESR and fluorescence studies. In: 48th Annual Meeting of the Biophysical Society, FEB 14-18, 2004, Baltimore, MD.

Rakesh, Ramachandran and Joseph, Agnel Praveen and Bhaskara, Ramachandra M and Srinivasan, Narayanaswamy (2016) Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps. In: RNA BIOLOGY, 13 (10). pp. 1025-1040.

Rakesh, Ramachandran and Krishnan, Rangachari and Sattlegger, Evelyn and Srinivasan, Narayanaswamy (2017) Recognition of a structural domain (RWDBD) in Gcn1 proteins that interacts with the RWD domain containing proteins. In: BIOLOGY DIRECT, 12 .

Rakshambikai, R and Srinivasan, N and Gadkari, Rupali A (2014) REPERTOIRE OF PROTEIN KINASES ENCODED IN THE GENOME OF ZEBRAFISH SHOWS REMARKABLY LARGE POPULATION OF PIM KINASES. In: JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 12 (1).

Rakshambikai, R and Yamunadevi, S and Anamika, K and Tyagi, N and Srinivasan, N (2012) Repertoire of Protein Kinases Encoded in the Genome of Takifugu rubripes. In: COMPARATIVE AND FUNCTIONAL GENOMICS, 2012 .

Rakshambikai, Ramaswamy and Gnanavel, Mutharasu and Srinivasan, Narayanaswamy (2014) Hybrid and Rogue Kinases Encoded in the Genomes of Model Eukaryotes. In: PLOS ONE, 9 (9).

Rakshambikai, Ramaswamy and Manoharan, Malini and Gnanavel, Mutharasu and Srinivasan, Narayanaswamy (2015) Typical and atypical domain combinations in human protein kinases: functions, disease causing mutations and conservation in other primates. In: RSC ADVANCES, 5 (32). pp. 25132-25148.

Rakshambikai, Ramaswamy and Srinivasan, Narayanaswamy and Nishant, Koodali Thazath (2013) Structural Insights into Saccharomyces cerevisiae Msh4-Msh5 Complex Function Using Homology Modeling. In: PLOS ONE, 8 (11).

Ramachandraiah, Gosu and Chandra, Nagasuma R (2000) Sequence and Structural Determinants of Mannose Recognition. In: Proteins: Structure, Function, and Genetics, 39 (4). pp. 358-364.

Ramachandraiah, Gosu and Chandra, Nagasuma R and Surolia, A and Vijayan, M (2003) Computational analysis of multivalency in lectins: structures of garlic lectin± oligosaccharide complexes and their aggregates. In: Glycobiology, 13 (11). pp. 765-775.

Ramachandraiah, Gosu and Chandra, Nagasuma R and Surolia, A and Vijayan, M (2002) Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin. In: Acta Crystallographica Section D, 58 . pp. 414-420.

Ramachandran, GN and Sarathy, KP and Kolaskar, AS (1973) Inter atomic potential functions and crystal packing. In: Zeitschrift für Kristallographie, 138 . pp. 299-312.

Ramachandran, GN and Sarathy, KP and Kolaskar, AS (1973) Molecular Packing Of Crystal, N-Methyl Acetamide. In: Zeitschrift für Naturforschung - A, A 28 (5). pp. 643-646.

Ramachandran, GN (1971) Reconstruction of substance from shadow - 1. Mathematical Theory with Application to Three-Dimensional Radiography and Electron Microscopy. In: Proceedings of the Indian Academy of Sciences - Section A, 74 (1). pp. 14-24.

Ramachandran, GN and Bansal, M (1976) Steroechemistry of the Pyrrolidine rings in the collagen structure. In: Current Science, 45 (18). pp. 647-649.

Ramachandran, GN and Bansal, M and Bhatnagar, RS (1973) A hypothesis on the role of hydroxyproline in stabilizing collagen structure. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 322 (1). pp. 166-171.

Ramachandran, GN and Chandrasekaran, R (1971) Conformational energy map of a dipeptide unit in relation to infrared and nuclear magnetic resonance data. In: Biopolymers, 10 (5). pp. 935-939.

Ramachandran, GN and Kolaskar, AS (1973) The non-planar peptide unit II. Comparison of theory with crystal structure datastar, open. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 303 (2). pp. 385-388.

Ramachandran, GN and Kolaskar, AS and Narayan, Ramesh (1974) A New Type of Dihedral Angle for the Description of Bimolecular Structures. In: Current Science, 43 (7). pp. 197-199.

Ramachandran, GN and Kolaskar, AS and Ramakrishnan, C and Sasisekharan, V (1974) The mean geometry of the peptide unit from crystal structure data. In: Biochimica et Biophysica Acta (BBA), 359 (2). pp. 298-302.

Ramachandran, GN and Lakshminarayanan, AV and Kolaskar, AS (1973) Theory of the non-planar peptide unitstar, open. In: Biochimica et Biophysica Acta (BBA) - Protein Structure, 303 (1). pp. 8-13.

Ramachandran, GN and Mitra, Alok K (1976) An explanation for the rare occurrence of cis peptide units in proteins and polypeptides. In: Journal of Molecular Biology, 107 (1). pp. 85-92.

Ramachandran, GN and Ramachandran, G and Tagare, SG (1972) A semi-classical model of the electron containing tachyonic matter. In: Physics Letters A, 39 (5). pp. 383-384.

Ramachandran, GN and Shamala, N (1976) Crystal structure from packing studies: application to the triclinic structure of the cyclic hexapeptide cyclo-(gly-tyr-gly)2. In: Acta Crystallographica Section A: Crystal Physics, Diffraction, Theoretical and General Crystallography, 32 (6). pp. 1008-1009.

Ramachandran, Surya and Venugopal, Anila and Sathisha, K and Reshmi, G and Charles, Sona and Divya, G and Chandran, Pratap NS and Mullassari, Ajit and Pillai, Radhakrishna M and Kartha, CC (2012) Proteomic profiling of high glucose primed monocytes identifies cyclophilin A as a potential secretory marker of inflammation in type 2 diabetes. In: PROTEOMICS, 12 (18). pp. 2808-2821.

Ramakrishna, T and Vatsala, S and Shobi, V and Sreekumaran, E and Madhav, TR and Ramesh, J and Easwaran, KRK (1998) Betaine reverses toxic effects of aluminium: Implications in Alzheimer's disease (AD) and AD-like pathology. In: Current Science, 75 (11). pp. 1153-1161.

Ramakrishna, T (1998) Cognitive neuroscience: The hemispheric war. In: Current Science, 74 (11). pp. 932-933.

Ramakrishna, T (1997) Decade of the brain: Reflections on some Indian concerns in cognitive neuroscience. In: Current Science, 73 (12). pp. 1045-1047.

Ramakrishnan, C and Lakshmi, B and Kurien, A and Devipriya, D and Srinivasan, N (2007) Structural compromise of disallowed conformations in Peptide and protein structures. In: Protein Peptide Letters, 14 (7). pp. 672-682.

Ramakrishnan, C and Nataraj, DV (1998) Energy minimization studies on \alpha -turns. In: Journal of Peptide Science, 4 (4). pp. 239-252.

Ramakrishnan, C and Srinivasan, N (1990) Glycyl residues in proteins and peptides:an analysis. In: Current Science, 59 (17-18). pp. 851-862.

Ramakrishnan, C and Srinivasan, N and Nataraj, DV (1996) Motifs and conformational analysis of amino acid residues adjoining beta-turns in proteins. In: International Journal of Peptide And Protein Research, 48 (05). pp. 420-428.

Ramakrishnan, C and Srinivasan, N and Prashanth, D (1987) Conformation of glycyl residues in globular proteins. In: International Journal of Peptide & Protein Research, 29 (5). pp. 629-637.

Ramakrishnan, Chandrashekharan and Sowdhamini, Ramanathan and Balaram, Padmanabhan (1988) Analysis of short interproton distances in proline peptides as a guide in the interpretation of nuclear overhauser effects. In: Collection of Czechoslovak Chemical Communications, 53 (11b). pp. 2801-2809.

Ramakrishnan, C (2001) Remembrances of Professor G. N. Ramachandran (1922-2001). In: Current Science, 81 (8). pp. 1127-1128.

Ramakrishnan, C and Dani, VS and Ramasarma, T (2002) A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins. In: Protein Engineering, 15 (10). pp. 783-798.

Ramakrishnan, C and Geetha, YS (1990) Analysis of the coordination geometry in copper complexes. In: Proceedings of Indian Academy of Sciences, Chemical Sciences, 102 (4). pp. 481-496.

Ramakrishnan, C and Rao, BN (1980) Stereochemical studies on cyclic peptides. Part XI. Conformation of cyclic pentapeptides having intramolecular 3 leads to 1 hydrogen bonds. In: International Journal of Peptide & Protein Research, 15 (2). pp. 81-95.

Ramakrishnan, C and Sukumar, M and Balaram, P (1987) Nuclear overhauser effects as probes of peptide structure. A diagnostic for left-handed helical conformations. In: Biochemical and Biophysical Research Communications, 149 (3). pp. 953-959.

Ramakrishnan, C and Mitra, Jayati (1978) The dimensions of the ester unit. In: journal of Chemical Science, 87 (1). pp. 13-21.

Ramakrishnan, Gayatri and Chandra, Nagasuma and Srinivasan, Narayanaswamy (2017) Exploring anti-malarial potential of FDA approved drugs: an in silico approach. In: MALARIA JOURNAL, 16 .

Ramakrishnan, Gayatri and Chandra, Nagasuma R and Srinivasan, Narayanaswamy (2014) From Workstations to Workbenches: Towards Predicting Physicochemically Viable Protein-Protein Interactions Across a Host and a Pathogen. In: IUBMB LIFE, 66 (11). pp. 759-774.

Ramakrishnan, Gayatri and Chandra, Nagasuma R and Srinivasan, Narayanaswamy (2015) Recognizing drug targets using evolutionary information: implications for repurposing FDA-approved drugs against Mycobacterium tuberculosis H37Rv. In: MOLECULAR BIOSYSTEMS, 11 (12). pp. 3316-3331.

Ramakrishnan, Gayatri and Jain, Abha and Chandra, Nagasuma and Srinivasan, Narayanaswamy (2016) Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria. In: BIOLOGY DIRECT, 11 .

Ramakrishnan, Gayatri and Ochoa-Montano, Bernardo and Raghavender, Upadhyayula S and Mudgal, Richa and Joshi, Adwait G and Chandra, Nagasuma R and Sowdhamini, Ramanathan and Blundell, Tom L and Srinivasan, Narayanaswamy (2015) Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: Insights into structure and function. In: TUBERCULOSIS, 95 (1). pp. 14-25.

Ramakrishnan, J and Kandasamy, S and Iruthayaraj, A and Magudeeswaran, S and Chinnasamy, K and Poomani, K (2021) Strong Binding of Leupeptin with TMPRSS2 Protease May Be an Alternative to Camostat and Nafamostat for SARS-CoV-2 Repurposed Drug: Evaluation from Molecular Docking and Molecular Dynamics Simulations. In: Applied Biochemistry and Biotechnology .

Ramakrishnan, T (1998) How do we 'miss the wood for the trees'? Do females have natural flair for lullaby? Cognitive neuroscience tells it all (or does it?). In: Current Science (Bangalore), 74 (1). pp. 9-10.

Raman, Swetha and Singh, Meetali and Tatu, Utpal and Suguna, Kaza (2015) First Structural View of a Peptide Interacting with the Nucleotide Binding Domain of Heat Shock Protein 90. In: SCIENTIFIC REPORTS, 5 .

Raman, Swetha and Suguna, Kaza (2015) Functional characterization of heat-shock protein 90 from Oryza sativa and crystal structure of its N-terminal domain. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 71 (6). pp. 688-696.

Ramana, Lakshmi Narashimhan and Sharma, Shilpee and Sethuraman, Swaminathan and Ranga, Udaykumar and Krishnan, Uma Maheswari (2014) Evaluation of chitosan nanoformulations as potent anti-HIV therapeutic systems. In: BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1840 (1). pp. 476-484.

Ramani, R and Sasisekharan, V and Venkatesan, K (1977) Conformational studies on cyclic dipeptides. In: International Journal of Peptide and Protein Research, 9 (4). pp. 277-292.

Ramani, R (1977) Note on stereo-diagrams of molecules. In: Journal of Indian Institute of science, 59 (2). pp. 25-29.

Ramani, R and Venkatesan, K and Marsh, RE (1978) Crystal structure and conformation of the cyclic dipeptide cyclo-(L-histidyl-L-aspartyl) trihydrate. In: Journal Of The American Chemical Society, 100 (3). pp. 949-953.

Ramaprasad, S and Shekar, SC and Easwaran, KRK (1981) The Conformation Of An Ld-Tripeptide N-Acetyl-L-Prolyl-D-Alanyl-Methylamide From Proton And C-13 Nmr. In: Current Science, 50 (15). pp. 662-668.

Ramasarma, T (2007) A view of the history of biochemistry in India. In: Current Science, 92 (8). pp. 1169-1172.

Ramasarma, T and Ramakrishnan, C (2002) On the importance of backbone loop and peptide flip in the Walker sequence in F-1-ATPase action. In: Indian Journal of Biochemistry & Biophysics, 39 (1). pp. 5-15.

Ramasarma, T and Rao, Aparna VS (2007) Catalytic activity of superoxide dismutase: A method based on its concentration-dependent constant decrease in rate of autoxidation of pyrogallol. In: Current Science, 92 (11). pp. 1481-1482.

Ramasarma, T and Vaigundan, D (2018) Alternative pathway linked by hydrogen bonds connects heme-Fe of cytochrome c with subunit II-CuA of cytochrome a. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 505 (2). pp. 445-447.

Ramasarma, T and Vaigundan, D (2019) Connecting CuA with metal centers of heme a, heme a(3), CuB and Zn by pathways with hydrogen bond as the bridging element in cytochrome c oxidase. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 510 (2). pp. 261-265.

Ramasarma, T and Vaigundan, D (2019) Hydrogen bond-linked pathways of peptide units and polar groups of amino acid residues suitable for electron transfer in cytochrome c proteins. In: MOLECULAR AND CELLULAR BIOCHEMISTRY, 453 (1-2). pp. 197-203.

Ramasarma, T and Vaigundan, D (2019) Pathways linked by hydrogen bonds with redox-dependent breaks implicated in electron transfer in human cytochrome c protein. In: INDIAN JOURNAL OF BIOCHEMISTRY & BIOPHYSICS, 56 (1). pp. 46-52.

Ramasarma, T and Vaigundan, D (2019) Pathways of electron transfer and proton translocation in the action of superoxide dismutase dimer. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 514 (3). pp. 772-776.

Ramaswamy, S and Nethaji, M and Murthy, MRN (1989) Crystal-Structure Of Putrescine- Glutamic Acid Complex. In: Current Science (Bangalore), 58 (20). pp. 1160-1163.

Ramaswamy, N and Bansal, M and Gupta, G and Sasisekharan, V (1982) Left-handed helices for DNA: studies on poly[d(I-C)]. In: PNAS, 79 (20). pp. 6109-6113.

Ramaswamy, N and Bansal, Manju and Gupta, Goutam and Sasisekharan, V (1983) Structure of D-DNA: 8-fold or 7-fold helix? In: The EMBO Journal, 2 (9). pp. 1557-1560.

Ramaswamy, S and Murthy, MRN (1991) Crystal and molecular structure of sym-homospermidine monohydrate. In: Indian Journal of Biochemistry & Biophysics, 28 (5-6). pp. 504-512.

Ramaswamy, S and Murthy, MRN (1992) Crystal structure of cadaverine dihydrochloride monohydrate. In: Indian Journal of Biochemistry and Biophys, 29 (5). pp. 40-406.

Ramaswamy, S and Murthy, MRN (1990) Crystal structure of putrescine aspartic acid complex. In: Current Science, 59 (7). pp. 379-382.

Ramaswamy, S and Murthy, MRN (1991) The crystal and molecular structure of putrescine - di-glutamic acid complexes. In: Current Science (Bangalore), 61 (6). 410 -413.

Ramaswamy, S and Murty, MRN (1991) Crystal structure of hexanediamine-glutamic acid complex. In: Current Science (Bangalore), 60 (3). pp. 173-176.

Ramaswamy, Sriram and Murthy, MRN (1991) Crystal and molecular structure of putrescine DL- glutamic acid complex. In: Current Science (Bangalore), 61 (6). pp. 410-413.

Ramaswamy , S and Murthy, MRN (1992) Crystal structures of propanediamine complexed with L and DL- glutamic acid: effect of chirality on propanediamine. In: Acta Crystallographica Section B Structural Science, 48 (4). 488-492 .

Ramesh, J and Ghosh, JK and Swaminathan, CP and Ramasamy, P and Surolia, A and Sikdar, SK and Easwaran, KRK (2003) Studies on the aggregation and possible channel formation in membranes of a cyclic hexapeptide, cyclo $(d-Ala-l-Pro-l-Ala)_2$. In: Journal of Peptide Research, 61 (2). pp. 63-70.

Ramesh, N and Brahmachari, SK (1988) Dynamic nature of B to Z transition: role of DNA supercoiling and Z-DNA binding protein. In: Indian Journal of Biochemistry & Biophysics, 25 (6). 542 -547.

Ramesh, N and Brahmachari, SK (1989) Structural alteration from non-B to B-form could reflect DNase I hypersensitivity. In: Journal of Biomolecular Structure & Dynamics, 6 (5). pp. 899-906.

Ramesh, J and Madhav, TR and Vatsala, S and Ramakrishna, T and Easwaran, KRK and Guillard, O and Deloncle, R (1999) Interaction of A beta peptide (1-40) with amino acid aluminium complexes: relevance to Alzheimer's disease. In: Alzheimers Reports, 2 (1). pp. 31-35.

Ramesh, N and Brahmachari, Samir K (1983) Critical cation balance in B \rightarrow Z transition: role of $Li^+$. In: FEBS Letters, 164 (1). pp. 33-37.

Ramesh, N and Bramachari, SK (1983) Critical Cation Balance In B-]Z Transition - Role Of Li+. In: FEBS Letters, 164 (1). 33-37.

Ramesh, N and Shouche, Yogesh S and Brahmachari, Samir K (1986) Recognition of B and Z forms of DNA by Escherichia coli DNA polymerase I. In: Journal of Molecular Biology, 190 (4). pp. 635-638.

Ramkumar, R and Surolia, A and Podder, SK (1995) Energetics of carbohydrate binding by a 14 kDa S-type mammalian lectin. In: Biochemical Journal, 308 (Pt 1). pp. 237-241.

Ramnarayan, K and Ramakrishnan, C (1987) Standard dimensions for cis N-methyl peptide unit and flexibility of cis peptide units. In: Journal of Biosciences, 12 (4). pp. 331-347.

Ramprasad, S and Kelleherals, HP and Kunwar, AC and Khetrapal, CL (1976) Amide Planarity As Studied By Nmr Of Oriented Molecules - Spectrum Of N-Methylacetamide. In: MOLECULAR CRYSTALS AND LIQUID CRYSTALS, 34 (1). pp. 19-23.

Ramprasad, S and Kunwart, AC and Khetrapal, CL (1979) NMR Of oriented monosubstituted amides-cis and trans n-methyl formamide. In: International Journal of Peptide & Protein Research, 14 (2). pp. 123-129.

Ramya, TNC and Mishra, Satyendra and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2007) Inhibitors of Nonhousekeeping Functions of the Apicoplast Defy Delayed Death in Plasmodium falciparum. In: Antimicrobial Agents and Chemotherapy, 51 (1). pp. 307-316.

Ramya, TNC and Karmodiya, Krishanpal and Surolia, Avadhesha and Surolia, Namita (2007) 15-Deoxyspergualin Primarily Targets the Trafficking of Apicoplast Proteins in Plasmodium falciparum. In: Journal of Biological Chemistry, 282 (9). pp. 6388-6397.

Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2007) 15-Deoxyspergualin inhibits eukaryotic protein synthesis through $eIF2\alpha$ phosphorylation. In: Biochemical Journal, 401 (2). pp. 411-420.

Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2006) 15-Deoxyspergualin modulates Plasmodium falciparum heat shock protein function. In: Biochemical and Biophysical Research Communications, 348 (2). pp. 585-592.

Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2005) Is the fatty acid synthesis pathway a good target for anti-malarial therapy? In: International Union of Biochemistry and Molecular Biology: Life, 57 (4-5). pp. 371-373.

Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2006) Polyamine synthesis and salvage pathways in the malaria parasite Plasmodium falciparum. In: Biochemical and Biophysical Research Communications, 348 (2). pp. 579-584.

Ramya, TNC and Surolia, Namita and Surolia, Avadhesha (2002) Survival strategies of the malarial parasite Plasmodium falciparum. In: Current Science, 83 (7). pp. 818-825.

Ranajit, Paul and Balaram, P (1978) A fluorescent probe study of the solubilisation of cholesterol by biie salt-phospholipid micelles. In: Biochemical and Biophysical Research Communications, 81 (3). pp. 850-857.

Ranganathan, M and Balaram, P (1984) 13C NMR studies on trifluoroacetyl derivatives of 2-acetamido-2-deoxyhexoses. In: Organic Magnetic Resonance, 22 (11). 717 -719.

Ranganathan, M and Balaram, P (1984) $^{13}C$ NMR studies on trifluoroacetyl derivatives of 2-acetamido-2-deoxyhexoses. In: Organic Magnetic Resonance, 22 (11). pp. 717-719.

Ranganathan, M and Balaram, P (1980) Trifluoroacetic Anhydride. A Convenient NMR Solvent for Carbohydrates. 270 MHz 1H NMR Studies of 2-Acetamido-2-Deoxyhexoses. In: Organic Magentic Resonance, 13 (3). pp. 220-223.

Ranganathan, M and Rao, VSR (1981) Theoretical-Studies On The Conformations Of Acyclic Alditols. In: Current Science, 50 (1). pp. 933-936.

Ranganathan, Melpakkam and Rao, Vallurupalli SR and Balaram, Padmanabhan (1977) Acyclic sugars: the ring-opening of 2-acetamido-2-deoxyhexopyranoses in trifluoroacetic acid. In: Carbohydrate Research, 58 (1). pp. 245-248.

Ranganathan, Subramania and Muraleedharan, KM and Bharadwaj, Parimal and Chatterji, Dipankar and Karle, Isabella (2002) The design and synthesis of redox core-alpha amino acid composites based on thiol-disulfide exchange mechanism and a comparative study of their zinc abstraction potential from [CCXX] boxes in proteins. In: Tetrahedron, 58 (14). pp. 2861-2874.

Rangannan, Vetriselvi and Bansal, Manju (2007) Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability. In: Journal of Biosciences, 32 (5). pp. 871-881.

Rangannan, Vetriselvi and Bansal, Manju (2010) High-quality annotation of promoter regions for 913 bacterial genomes. In: Bioinformatics, 26 (24). pp. 3043-3050.

Rangannan, Vetriselvi and Bansal, Manju (2009) Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition. In: Molecular BioSystems, 5 (12). pp. 1758-1769.

Rani, Geetha P and Bachhawat, Kiran and Misquith, Sandra and Surolia, Avadhesha (1999) Thermodynamic Studies of Saccharide Binding to Artocarpin, a B-Cell Mitogen, Reveals the Extended Nature of Its Interaction with Mannotriose [3,6-Di-O-(alpha -D-mannopyranosyl)-D-mannose]. In: Journal of Biologica Chemistry, 274 (42). pp. 29694-29698.

Rani, Geetha P and Bachhawat, Kiran and Reddy, Bhanuprakash G and Oscarson, Stefan and Surolia, Avadhesha (2000) Isothermal Titration Calorimetric Studies on the Binding of Deoxytrimannoside Derivatives with Artocarpin: Implications for a Deep-Seated Combining Site in Lectins. In: Biochemistry, 39 (35). 10755 -10760.

Rani, N and Surolia, A (2024) Targeted suppression of MEP pathway genes DXS, IspD and IspF to explore the mycobacterial metabolism and survival. In: International Journal of Biological Macromolecules, 272 .

Rani, Nidhi and Hazra, Samannaya and Singh, Amrita and Surolia, Avadhesha (2019) Functional annotation of putative fadE9 of Mycobacterium tuberculosis as isobutyryl-CoA dehydrogenase involved in valine catabolism. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 122 . pp. 45-57.

Rani, P and George, B and Sabarishree, V and Biswas, S and Madhurya, V and Pal, A and Rajmani, RS and Das, S (2024) MicroRNA-22-3p displaces critical host factors from the 5â�² UTR and inhibits the translation of Coxsackievirus B3 RNA. In: Journal of Virology, 98 (2).

Ranjan, Kishu and Sharma, Anupama and Surolia, Avadhesha and Pathak, Chandramani (2014) Regulation of HA14-1 mediated oxidative stress, toxic response, and autophagy by curcumin to enhance apoptotic activity in human embryonic kidney cells. In: BIOFACTORS, 40 (1). pp. 157-169.

Ranjani, C Vasuki and Rangarajan, Sarani and Michael, Daliah and Sekar, K and Roy, S (2008) Role of water molecules and ion pairs in Dps and related ferritin-like structures. In: International Journal of Biological Macromolecules, 43 (4). pp. 333-338.

Ranjini, Arumugam Sri and Das, Puspendu K and Balaram, Padmanabhan (2005) Binding Constant Measurement by Hyper-Rayleigh Scattering: Bilirubin-Human Serum Albumin Binding as a Case Study. In: Journal of Physical Chemistry B, 109 (12). pp. 5950-5953.

Rao, EK and Sasisekharan, V (1990) Synthesis of distamycin and netropsin analogs. Part II. DNA binding bisquaternary ammonium heterocycles analogs to NSC 101327. In: Indian Journal of Chemistry, Section B: Organic Chemistry Including Medicinal Chemistry, 29 (6). pp. 503-507.

Rao, KE and Sasisekharan, V (1990) Synthesis of distamycin and netropsin analogs. Part III. Biologically active analogs of tris(m-benzamido) compound. In: Indian Journal of Chemistry, Section B: Organic Chemistry Including Medicinal Chemistry, 29 (6). pp. 508-513.

Rao, Ramachandra Satish P and Surolia, Avadhesha and Surolia, Namita (2003) Triclosan: A shot in the arm for antimalarial chemotherapy. In: Molecular and Cellular Biochemistry, 253 (1-2). pp. 55-63.

Rao, SN and Sasisekharan, V (1984) Conformations of 3-methylpurine nucleosides - implications on the structure of dna duplexes. In: Indian Journal of Biochemistry & Biophysics, 21 (4). pp. 222-226.

Rao, Shilpa P and Sikdar, SK (2006) Astrocytes in 17\beta-estradiol treated mixed hippocampal cultures show attenuated calcium response to neuronal activity. In: GLIA, 53 (8). pp. 817-826.

Rao, VSR and Reddy, BVS and Mukhopadhyay, C and Biswas, M (1990) Computer simulation of protein-carbohydrate complexes Application to concanavalin A and L-arabinose-binding protein. [Book Chapter]

Rao, VSR and Sathyana, BK (1973) Biological Significance Of Shapes Of Polysaccharides. In: Current Science (Bangalore), 42 (19). pp. 684-685.

Rao, VSR and Vasudevan, TK (1983) Conformation and Activity of \beta-Lactam Antibiotics. In: Critical Reviews in Biochemistry and Molecular Biology, 14 (3). pp. 173-206.

Rao, Basuthkar Jagadeeswar and Brahmachari, Samir K and Rao, Manchanahalli R Satyanarayana (1983) Structural Organization Of The Meiotic Prophase Chromatin in the Rat Testis. In: Journal of Biological Chemistry, 258 (22). pp. 13478-13485.

Rao, DN Ramakrishna and Mahadevan, S and Balaram, P (1978) Structural studies of the hen's egg lipovitellins. NMR and fluorescence investigations. In: Chemistry and Physics of Lipids, 22 (2). pp. 105-113.

Rao, Ekambareswara K and Dasgupta, Dipak and Sasisekharan, V (1988) Interaction of synthetic analogs of distamycin and netropsin with nucleic acids. Does curvature of ligand play a role in distamycin-DNA interactions? In: Biochemistry, 27 (8). pp. 3018-3024.

Rao, GS Jagannatha and Murthy, HM Krishna and Rao, N Appaji and Vijayan, M (1982) N-Carbamoyl-DL-aspartic acid. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 38 (5). pp. 1672-1674.

Rao, KSJ and Easwaran, KRK (1997) 27 Al-NMR studies of aluminum transport across yeast cell membranes. In: Molecular and Cellular Biochemistry, 175 (1-2). pp. 59-63.

Rao, KSJ and Ramesh, J and Easwaran, KRK (1999) Neuropeptide Y structure is modulated by aluminium in the hypothalamus. In: ALZHEIMERS REPORTS, 2 (2). 99-103 .

Rao, Narasinga BN and Kumar, Anil and Balaram, Hemalatha and Ravi, A and Balaram, P (1983) Nuclear Overhauser Effects and circular Dichroism as Probes of \beta.-turn Conformations in Acyclic and Cyclic Peptides with Pro-X Sequences. In: Journal of the American Chemical Society, 105 (25). pp. 7423-7428.

Rao, Narasinga BN and Ramakrishnan, C and Balaram, P (1979) Metal binding to pyridoxal derivatives. An NMR study of the interaction of Eu(III) with pyridoxal phosphate and pyridoxamine phosphate. In: Journal of Biosciences, 1 (1). pp. 35-47.

Rao, Pulla and Balaram, P (1982) Molecular Structure of t-Butyloxycarbonyl-Leu-Aib-Pro-Val-Aib-Methyl Ester, a Fragment of Alamethicin and Suzukacillin: A $3_{10}$-Helical Pentapeptide. In: Biopolymers, 21 (12). pp. 2461-2472.

Rao, Pulla and Nagaraj, R and Rao, CNR and Balaram, P (1979) Infrared Spectroscopy as a Probe for the Development of Secondary Structure in the Amino-Terminal Segment of Alamethicin. In: FEBS Letters, 100 (2). pp. 244-248.

Rao, S and Sikdar, SK (2000) Modification of alpha subunit of RIIA sodium channels by aconitine. In: Pflugers Archiv European Journal of Physiology, 439 (3). pp. 349-355.

Rao, SS and Kundapura, SV and Dey, D and Palaniappan, C and Sekar, K and Kulal, A and Ramagopal, UA (2024) Cumulative phylogenetic, sequence and structural analysis of Insulin superfamily proteins provide unique structure-function insights. In: Molecular Informatics, 43 (9).

Rao, Shashidhar N and Sasisekharan, V (1986) Conformations of Dinucleoside Monophosphates in Relation to Duplex DNA Structures. In: Biopolymers, 25 (1). pp. 17-30.

Rao, Shashidhar N and Sasisekharan, V (1983) Handedness of duplex DNA: role of the glycosydic torsion. In: International Journal of Biological Macromolecules, 5 (2). pp. 83-88.

Rao, Shilpa P and Sikdar, SK (2004) Estradiol-induced changes in the activity of hippocampal neurons in network culture are suppressed by co-incubation with gabapentin. In: Brain Research, 1022 (1-2). pp. 126-136.

Rao, Shilpa P and Sikdar, Sujit Kumar (2007) Acute treatment with 17\beta-estradiol attenuates astrocyte-astrocyte and astrocyte-neuron communication. In: GLIA, 55 (16). pp. 1680-1689.

Rao, VSR (1981) Theoretical-studies on the binding specificities of transpeptidase(s) and penicillinases. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 27.

Rao, VSR and Biswas, Margaret and Mukhopadhyay, Chaitali and Balaji, PV (1989) Computer simulation of protein—carbohydrate complexes: application to arabinose-binding protein and pea lectin. In: Journal of Molecular Structure, 194 . pp. 203-214.

Rao, VSR and Reddy, VS and Mukhopadhyay, C (1989) Computer Simulation of Protein—Carbohydrate Complexes. In: Abstracts of Papers - American Chemical Society, National Meeting, 197 . 61 -CARB.

Rao, VSR and Sekharudu, Y Chandra (1985) Computer modelling studies on the modes of binding of some of the Î±-glycosidically linked disaccharides to concanavalin A. In: Journal of Biosciences, 8 (1-2). 389 -401.

Rao, VSR and Vijayalakshmi, KS (1974) Theoretical studies on the conformations of aldopentopyranose tetraacetates. In: Carbohydrate Research, 33 (2). pp. 363-365.

Rathore, Ravindranath Singh and Banerjee, Arindam (2003) Water-mediated supramolecular $\beta$-sheet from a short synthetic peptide containing non-coded amino acids. In: Current Science, 85 (8). pp. 1217-1220.

Rathore, Ujjwal and Kesavardhana, Sannula and Mallajosyula, Vamsee Aditya V and Varadarajan, Raghavan (2014) Immunogen design for HIV-1 and influenza. In: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1844 (11, SI). pp. 1891-1906.

Rathore, Ujjwal and Purwar, Mansi and Vignesh, Venkada Subramanian and Das, Raksha and Kumar, Aditya Arun and Bhattacharyya, Sanchari and Arendt, Heather and DeStefano, Joanne and Wilson, Aaron and Parks, Christopher and La Branche, Celia C and Montefiori, David C and Varadarajan, Raghavan (2018) Bacterially expressed HIV-1 gp120 outer-domain fragment immunogens with improved stability and affinity for CD4-binding site neutralizing antibodies. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 293 (39). pp. 15002-15020.

Rathore, Ujjwal and Saha, Piyali and Kesavardhana, Sannula and Kumar, Aditya A and Mascola, John R and Varadarajan, Raghavan (2014) N-linked Glycosylation of HIV-1 core gp120 is Not Required for Native Trimer Formation or Viral Infectivity. In: PROTEIN SCIENCE, 23 (1).

Rathore, Ujjwal and Saha, Piyali and Kesavardhana, Sannula and Kumar, Aditya Arun and Datta, Rohini and Devanarayanan, Sivasankar and Das, Raksha and Mascola, John R and Varadarajan, Raghavan (2017) Glycosylation of the core of the HIV-1 envelope subunit protein gp120 is not required for native trimer formation or viral infectivity. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 292 (4). pp. 10197-10219.

Rathour, RK and Narayanan, R (2014) Homeostasis of functional maps in active dendrites emerges in the absence of individual channelostasis. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111 (17). E1787-E1796.

Rathour, Rahul K and Narayanan, Rishikesh (2019) Degeneracy in hippocampal physiology and plasticity. In: HIPPOCAMPUS .

Rathour, Rahul Kumar and Malik, Ruchi and Narayanan, Rishikesh (2016) Transient potassium channels augment degeneracy in hippocampal active dendritic spectral tuning. In: SCIENTIFIC REPORTS, 6 .

Rathour, Rahul Kumar and Narayanan, Rishikesh (2012) Influence fields: a quantitative framework for representation and analysis of active dendrites. In: JOURNAL OF NEUROPHYSIOLOGY, 107 (9). pp. 2313-2334.

Ratnaparkhi, Girish S and Awasthi, Satish Kumar and Rani, P and Balaram, P and Varadarajan, R (2000) Structural and thermodynamic consequences of introducing alpha-aminoisobutyric acid in the S peptide of ribonuclease S. In: Protein Engineering, 13 (10). pp. 697-702.

Ratnaparkhi, Girish S and Ramachandran, S and Udgaonkar, Jayant B and Varadarajan, R (1998) Discrepancies between the NMR and X-ray structures of uncomplexed barstar: Analysis suggests that packing densities of protein structures determined by NMR are unreliable. In: Biochemistry, 37 (19). pp. 6958-6966.

Ratnaparkhi, Girish S and Varadarajan, R (2001) Osmolytes stabilize Ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states. In: Journal of Biological Chemistry, 276 (31). pp. 28789-28798.

Ratnaparkhi, Girish S and Varadarajan, R (1997) Structural studies of protein unfolding. In: Current Science (Bangalore), 72 (11). pp. 826-830.

Ratnaparkhi, Girish S and Varadarajan, R (2000) Thermodynamic and Structural Studies of Cavity Formation in Proteins Suggest That Loss of Packing Interactions Rather Than the Hydrophobic Effect Dominates the Observed Energetics. In: Biochemistry, 39 (40). pp. 12365-12374.

Ratnaparkhi, Girish S and Varadarajan, R (2000) Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics. In: Biochemistry, 39 (40). pp. 12365-12374.

Ratnaparkhi, Girish S and Varadarajan, R (1999) X-ray Crystallographic Studies of the Denaturation of Ribonuclease S. In: Proteins:Structure, Function, and Genetics, 36 (3). pp. 282-294.

Raval, Sujana and Gowda, Sharan B and Singh, Desh D and Chandra, Nagasuma R (2004) A database analysis of jacalin-like lectins: Sequence-structure-function relationships. In: Glycobiology, 14 (12). pp. 1247-1263.

Ravi, A and Balaram, P (1983) Cyclic Peptide Disulfides Consecutive \beta -Turn Conformation of a Synthetic Model Peptide Corresponding to the Active Site of Thioredoxin. In: Biochimica et Biophysica Acta, Protein Structure and Molecular Enzymology, 745 (3). pp. 301-309.

Ravi, A and Balaram, P (1984) Stabilization of \beta -Turn Conformations in Pro-X Sequences by Disulphide Bridging. Synthesis and Solution Conformations of Five Cyclic Cystine Peptides. In: Tetrahedron, 40 (13). pp. 2577-2583.

Ravi, A and Prasad, BW and Balaram, P (1983) Cyclic Peptide Disulfides - Solution And Solid-State Conformation Of Boc-Cys-Pro-Aib-Cys-S-S-Bridge-Nhme,A Disulfide-Bridged Peptide Helix. In: Journal of the American Chemical Society, 105 (1). pp. 105-109.

Ravi, V and Jain, A and Khan, D and Ahamed, F and Mishra, S and Giri, M and Inbaraj, M and Krishna, S and Sarikhani, M and Maity, S and Kumar, S and Shah, RA and Dave, P and Pandit, AS and Rajendran, R and Desingu, PA and Varshney, U and Das, S and Kolthur-Seetharam, U and Rajakumari, S and Singh, M and Sundaresan, NR (2019) SIRT6 transcriptionally regulates global protein synthesis through transcription factor Sp1 independent of its deacetylase activity. In: Nucleic Acids Research, 47 (17). pp. 9115-9131.

Ravi Kiran, M and Bansal, Manju (1998) Molecular dynamics simulations on parallel and antiparallel C.G*G triplexes. In: Journal of Biomolecular Structure & Dynamics, 16 (3). pp. 511-526.

Ravikumar, A and De Brevern, AG and Srinivasan, N (2021) Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility. In: Journal of Physical Chemistry B .

Ravikumar, A and Gopnarayan, MN and Subramaniam, S and Srinivasan, N (2022) Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography. In: IUCrJ, 9 . pp. 98-103.

Ravikumar, A and Srinivasan, N (2021) Hypervariability of accessible and inaccessible conformational space of proteins. In: Current Research in Structural Biology, 3 . pp. 229-238.

Ravikumar, Ashraya and Ramakrishnan, Chandrasekharan and Srinivasan, Narayanaswamy (2019) Stereochemical Assessment of (phi,psi) Outliers in Protein Structures Using Bond Geometry-Specific Ramachandran Steric-Maps. In: STRUCTURE, 27 (12). 1875+.

Ravindra, Gudihal and Balaram, Padmanabhan (2005) Plasmodium Falciparum Triosephosphate Isomerase: New Insights Into an Old Enzyme. In: Pure and Applied Chemistry, 77 (1). pp. 281-289.

Ravindra, Gudihal and Ranganayaki, Rappal S and Raghothama, Srinivasa and Srinivasan, Mandayam C and Gilardi, Richard D and Karle, Isabella L and Balaram, Padmanabhan (2004) Two Novel Hexadepsipeptides with Several Modified Amino Acid Residues Isolated from the Fungus. In: Chemistry & Biodiversity, 1 (3). pp. 489-504.

Ravishankar, R and Chandra, Nagasuma R and Vijayan, M (1998) X-Ray studies on Crystalline Complexes Involving Amino Acids and Peptides. XXXIV. Novel Mode of Aggregation, Interaction Patterns, and Chiral Effects on Maleic Acid Complexes of DL- and L-Arginine. In: Journal of Biomolecular Structure and Dynamics, 15 (6). pp. 1093-1100.

Ravishankar, R and Ravindran, M and Suguna, K and Surolia, A and Vijayan, M (1997) Crystal Structure of the Peanut Lectin-T-Antigen Complex. Carbohydrate Specificity Generated by Water Bridges. In: Current Science, 72 (11). pp. 855-861.

Ravishankar, R and Ravindran, M and Suguna, K and Surolia, A and Vijayan, M (1996) Crystal structure of peanut agglutimn-T-antigen complex. In: Progress in Biophysics and Molecular Biology, 65 (Suppl1). p. 126.

Ravishankar, R and Sagar, Bidya M and Roy, S and Purnapatre, K and Handa, P and Varshney, U and Vijayan, M (1998) X-Ray analysis of a complex of Escherichia Coli uracil DNA glycosylase(EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG. In: Nucleic Acids Research, 26 (21). pp. 4880-4887.

Ravishankar, R and Suguna, K and Surolia, A and Vijayan, M (1999) Structures of the complexes of peanut lectin with methyl-$\beta$-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins. In: Acta Crystallographica Section D: Biological Crystallography, 55 (8). pp. 1375-1382.

Ravishankar, R and Surolia, A and Vijayan, M and Lim, Sungtaek and Kishi, Yoshito (1998) Preferred Conformation of C-Lactose at the Free and Peanut Lectin Bound States. In: Journal of the American Chemical Society, 120 (44). pp. 11297-11303.

Ravishankar, R and Thomas, CJ and Suguna, K and Surolia, A and Vijayan, M (2001) Crystal Structures of the Peanut Lectin-Lactose Complex at Acidic pH: Retention of Unusual Quaternary Structure, Empty and Carbohydrate Bound Combining Sites, Molecular Mimicry and Crystal Packing Directed by Interactions at the Combining Site. In: Proteins: Structure, Function, and Genetics, 43 (3). pp. 260-270.

Ray, Shashikant and Jindal, Bhavya and Kunal, Kishore and Surolia, Avadhesha and Panda, Dulal (2015) BT-benzo-29 inhibits bacterial cell proliferation by perturbing FtsZ assembly. In: FEBS JOURNAL, 282 (20). pp. 4015-4033.

Ray, Soumya S and Balaram, Hemalatha and Balaram, P (1999) Unusual stability of a multiply nicked form of Plasmodium falciparum triosephosphate isomerase. In: Chemistry and Biology, 6 (9). pp. 625-637.

Ray, Soumya S and Balaram, Padmanabhan (1999) 1-Anilino-8-naphthalene sulfonate (ANS) binding to proteins revisited: Investigation of dye binding to molten globule states by electrospray ionization mass spectrometry. In: Journal of physical Chemistry B, 103 (34). pp. 7068-7072.

Ray, Soumya S and Singh, Kumar S and Balaram, P (2001) An Electrospray Ionization Mass Spectrometry Investigation of 1-Anilino-8- Naphthalene-Sulfonate (ANS) Binding to Proteins. In: Journal of the American Society for Mass Spectrometry, 12 (4). pp. 428-438.

Ray, Upasana and Roy, Chaitrali L and Kumar, Anuj and Mani, Prashant and Joseph, Agnel P and Sudha, G and Sarkar, Debi P and Srinivasan, N and Das, Saumitra (2013) Inhibition of the Interaction Between NS3 Protease and HCV IRES With a Small Peptide: A Novel Therapeutic Strategy. In: MOLECULAR THERAPY, 21 (1). pp. 57-67.

Rebehmed, J and de Brevern, AG and Sowdhamini, R and Joseph, AP (2022) Editorial: Advances in Molecular Docking and Structure-Based Modelling. In: Frontiers in Molecular Biosciences, 9 .

Reddy, ARV and Ananthanarayanan, VS (1979) Flourescence and kinetic studies on nucleotide pyrophosphatase from mung bean (Phaseolus-Aureus) Seedlings. In: Indian Journal of Biochemistry & Biophysics, 16 (1). pp. 18-19.

Reddy, B Uma and Mullick, Ranajoy and Kumar, Anuj and Sharma, Geetika and Bag, Paromita and Roy, Chaitrali Laha and Sudha, Govindarajan and Tandon, Himani and Dave, Pratik and Shukla, Ashutosh and Srinivasan, Priyanka and Nandhitha, Madhusudhan and Srinivasan, Narayanaswamy and Das, Saumitra (2018) A natural small molecule inhibitor corilagin blocks HCV replication and modulates oxidative stress to reduce liver damage. In: ANTIVIRAL RESEARCH, 150 . pp. 47-59.

Reddy, Bhanuprakash G and Bharadwaj, Satish and Surolia, Avadhesha (1999) Thermal Stability and Mode of Oligomerization of the Tetrameric Peanut Agglutinin: A Differential Scanning Calorimetry Study. In: Biochemistry, 38 (14). pp. 4464-4470.

Reddy, Bhanuprakash G and Bhat, Seetharam K (1998) Synergistic effect of UVB radiation and age on HMPS enzymes in rat lens homogenate. In: Journal of Photochemistry and Photobiology B: Biology, 43 (1). pp. 56-60.

Reddy, Bhanuprakash G and Bhat, Seethraram K (1999) Protection against UVB inactivation (in vitro) of rat lens enzymes by natural antioxidants. In: Molecular and Cellular Biochemistry, 194 (1-2). 41-45 .

Reddy, Bhanuprakash G and Purnapatre, Kedar and Lawrence, Rajendran and Roy, Sudipta and Varshney, Umesh and Surolia, Avadhesha (1999) Linear free-energy model description of the conformational stability of uracil-DNA glycosylase inhibitor. In: European Journal of Biochemistry, 261 (3). pp. 610-617.

Reddy, G Bhanuprakash and Bhat, K Seetharam (1998) UVB irradiation alters the activities and kinetic properties of the enzymes of energy metabolism in rat lens during aging. In: Journal of Photochemistry and Photobiology B: Biology, 42 (01). pp. 40-46.

Reddy, G Bhanuprakash and Narayanan, Sriram and Reddy, P Yadagiri and Surolia, Ira (2002) Suppression of DTT-induced aggregation of abrin by alpha A- and alpha B-crystallins: a model aggregation assay for alpha-crystallin chaperone activity in vitro. In: Febs Letters, 522 (1-3). pp. 59-64.

Reddy, G Bhanuprakash and Srinivas, VR and Ahmad, Nisar and Surolia, Avadhesha (1999) Molten globule-like state of peanut lectin monomer retains its carbohydrate specificity - Implications in protein folding and legume lectin oligomerization. In: Journal of Biological Chemistry, 274 (8). pp. 4500-4503.

Reddy, Madhusudana MB and Basuroy, Krishnayan and Aravinda, Subrayashastry and Balaram, Padmanabhan (2016) Crystallographic characterization of the alpha,gamma C-12 helix in hybrid peptide sequences. In: JOURNAL OF PEPTIDE SCIENCE, 22 (8). pp. 504-510.

Reddy, Muthukurpalya Bhojegowd Madhusudana and Basuroy, Krishnayan and Chandrappa, Siddappa and Dinesh, Bhimareddy and Basavalingappa, Vasantha and Venkatesha, Manjunath Achanna and Balaram, Padmanabhan (2015) Structural characterization of folded and extended conformations in peptides containing gamma amino acids with proteinogenic side chains: crystal structures of gamma(n), (alpha gamma)(n) and gamma gamma delta gamma sequences. In: NEW JOURNAL OF CHEMISTRY, 39 (5). pp. 3319-3326.

Reddy, Uma B and Mullick, Ranajoy and Kumar, Anuj and Sudha, Govindarajan and Srinivasan, Narayanaswamy and Das, Saumitra (2014) Small molecule inhibitors of HCV replication from Pomegranate. In: SCIENTIFIC REPORTS, 4 .

Reddy, Venugopala AR and Ananthanarayanan, VS and Rao, Appaji N (1979) Studies on nucleotidases in plants: Fluorescence and kinetic properties of nucleotide pyrophosphatase from mung bean (Phaseolus aureus) seedlings. In: Archives of Biochemistry and Biophysics, 198 (1). pp. 89-96.

Reddy, Vijay Sai and Rao, VSR (1992) Modes of binding of α(1–2) linked manno-oligosaccharides to concanavalin A. In: International Journal of Biological Macromolecules, 14 (4). pp. 185-192.

Rekha, N and Machado, SM and Narayanan, C and Krupa, A and Srinivasan, N (2004) Interaction Interfaces of Protein Domains Are Not Topologically Equivalent Across Families Within Superfamilies: Implications for Metabolic and Signaling Pathways. In: Proteins: Structure, Function, and Bioinformatics, 58 (2). pp. 339-353.

Rituparna, S Roy and Hosahudya, N Gopi and Raghothama, Srinivasarao and Karle, Isabella L and Balaram, Padmanabhan (2006) Hybrid peptide hairpins containing alpha- and omega-amino acids: Conformational analysis of decapeptides with unsubstituted beta-, gamma-, and delta-residues at positions 3 and 8. In: Chemistry - A European Journal, 12 (12). pp. 3295-3302.

Rohit, AC and Sathisha, K and Aparna, Hanudatta S (2012) A variant peptide of buffalo colostrum beta-lactoglobulin inhibits angiotensin I-converting enzyme activity. In: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 53 . pp. 211-219.

Roier, S and Mangala Prasad, V and McNeal, MM and Lee, KK and Petsch, B and Rauch, S (2023) mRNA-based VP8* nanoparticle vaccines against rotavirus are highly immunogenic in rodents. In: npj Vaccines, 8 (1).

Romer, Rudolf A. and Wells, Stephen A. and Jimenez-Roldan, J. Emilio and Bhattacharyya, Moitrayee and Vishweshwara, Saraswathi and Freedman, Robert B. (2016) The flexibility and dynamics of protein disulfide isomerase. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (12). pp. 1776-1785.

Roy, A and Narayanan, R (2021) Spatial information transfer in hippocampal place cells depends on trial-to-trial variability, symmetry of place-field firing, and biophysical heterogeneities. In: Neural Networks, 142 . pp. 636-660.

Roy, Pritam and Dinda, Amit Kumar and Chaudhury, Susmitnarayan and Dasgupta, Swagata (2018) beta-cyclodextrin encapsulated polyphenols as effective antioxidants. In: BIOPOLYMERS, 109 (1).

Roy, R and Narayanan, R (2022) Ion-channel degeneracy and heterogeneities in the emergence of complex spike bursts in CA3 pyramidal neurons. In: Journal of Physiology .

Roy, RS and Balaram, P (2004) Conformational properties of hybrid peptides containing a- and w-amino acids. In: Journal of Peptide Research, 63 (3). pp. 279-289.

Roy, RS and Balaram, Padmanabhan (2004) Conformational properties of hybrid peptides containing alpha and omega-amino acids. In: The Journal of Peptide Research, 63 (3). pp. 279-289.

Roy, Rituparna S and Gopi, Hosahudya N and Raghothama, S and Gilardi, Richard D and Karle, Isabella L and Balaram, Padmanabhan (2005) Peptide Hairpins with Strand Segments Containing \alpha - and \beta - Amino Acid Residues: Cross- Strand Aromatic Interactions of Facing Phe Residues. In: Peptide Science, 80 (6). pp. 787-799.

Roy, Rituparna S and Gopi, Hosahudya N and Raghothama, Srinivasa Rao and Karle, Isabella L and Balaram, Padmanabhan (2006) Hybrid Peptide Hairpins Containing $\alpha$-and $\varpi$-Amino Acids: Conformational Analysis of Decapeptides with Unsubstituted $\beta$-, $\gamma$-, and $\delta$-Residues at Positions 3 and 8. In: Chemistry - A European Journal, 12 (12). 3295 -3302.

Roy, Rituparna S and Karle, Isabella L and Raghothama, S and Balaram, P (2004) $\alpha,\beta$hybrid peptides:a polypeptide helix with a central segment containing two consecutive $\beta$-amino acid residues. In: Proceedings of the National Academy of Sciences, 101 (47). pp. 16478-16482.

Roy, Siddhartha and Gupta, Surbhi and Das, Satyabrata and Sekar, K and Chatterji, Dipankar and Vijayan, M (2004) X-ray Analysis of Mycobacterium smegmatis Dps and a Comparative Study Involving Other Dps and Dps-like Molecules. In: Journal of Molecular Biology, 339 (5). pp. 1103-1113.

Roy, Siddhartha and Gupta, Surbhi and Das, Surbhi and Sekar, K and Chatterji, Dipankar and Vijayan, M (2003) Crystallization and preliminary X-ray diffraction analysis of Mycobacterium smegmatis Dps. In: Acta Crystallographica Section D, 59 . pp. 2254-2256.

Roy, Siddhartha and Saraswathi, Ramachandran and Chatterji, Dipankar and Vijayan, M (2008) Structural Studies on the Second Mycobacterium smegmatis Dps: Invariant and Variable Features of Structure, Assembly and Function. In: Journal of Molecular Biology, 375 (4). pp. 948-959.

Roy, Siddhartha and Saraswathi, Ramachandran and Gupta, Surbhi and Sekar, K and Chatterji, Dipankar and Vijayan, M (2007) Role of N and C-terminal Tails in DNA Binding and Assembly in Dps: Structural Studies of Mycobacterium smegmatis Dps Deletion Mutants. In: Journal of Molecular Biology, 370 (4). pp. 752-767.

Roy, Siddhartha and Singh, Desh Deepak and Vijayan, M (2005) X-ray studies on crystalline complexes involving amino acids and peptides. XLII. Adipic acid complexes of L- and DL-arginine and supramolecular association in arginine-dicarboxylic acid complexes. In: Acta crystallographica. Section B, Structural science, 61 (1). pp. 89-95.

Roy, TB and Sarma, SP (2023) Insights into the solution structure and transcriptional regulation of the MazE9 antitoxin in Mycobacterium tuberculosis. In: Proteins: Structure, Function and Bioinformatics .

Rudresh, * and Jain, Rinku and Dani, Vardhan and Mitra, Ashima and Srivastava, Sarika and Sarma, Siddhartha P and Varadarajan, R and Ramakumar, S (2002) Structural consequences of replacement of an \alpha-helical Pro residue in Escherichia coli thioredoxin. In: Protein Engineering, 15 (8). pp. 627-633.

S

Sabareesh, V and Gowd, Hanumae K and Ramasamy, P and Sudarslal, S and Krishnan, KS and Sikdar, SK and Balaram, P (2006) Characterization of contryphans from Conus loroisii and Conus amadis that target calcium channels. In: Peptides, 27 (11). pp. 2647-2654.

Sabareesh, V and Ranganayaki, RS and Raghothama, S and Bopanna, MP and Balaram, Hemalatha and Srinivasan, MC and Balaram, Padmanabhan (2007) Identification and characterization of a library of microheterogeneous cyclohexa-depsipeptides from the fungus. In: Journal of Natural Products, 70 (5). pp. 715-729.

Sabareesh, V and Ranganayaki, RS and Raghothama, Srinivasarao and Bopanna, MP and Balaram, Hemalatha and Srinivasan, MC and Balaram, P (2007) Identification and characterization of a library of microheterogeneous cyclohexadepsipeptides from the fungus Isaria. In: Journal of Natural Products, 70 (5). pp. 715-729.

Sabareesh, Varatharajan and Balaram, Padmanabhan (2006) Tandem electrospray mass spectrometric studies of proton and sodium ion adducts of neutral peptides with modified N- and C-termini: synthetic model peptides and microheterogeneous peptaibol antibiotics. In: Rapid Communications in Mass Spectrometry, 20 (4). pp. 618-628.

Sabareesh, Varatharajan and Sarkar, Paramita and Sardesai, Abhijit A and Chatterji, Dipankar (2010) Identifying N60D mutation in omega subunit of Escherichia coli RNA polymerase by bottom-up proteomic approach. In: Analyst, 135 (10). pp. 2723-2729.

Sabharwal, P and Sushmitha, C and Amritha, CK and Natraj, U and Murthy, MRN and Savithri, HS (2020) Development of pepper vein banding virus chimeric virus-like particles for potential diagnostic and therapeutic applications. In: Archives of Virology, 165 (5). pp. 1163-1176.

Sachidananda, Saraswathi and Gopalan, Srividya and Varadarajan, Sridhar (2005) Hardware-Software Hybrid Packet Processing for Intrusion Detection Systems. In: International Conference, CIS 2005, December 15-19, 2005, Xi’an, China..

Sadasivan, C and Nagendra, HG and Vijayan, M (1998) Plasticity, Hydration and Accessibility in Ribonuclease A. The Structure of a New Crystal Form and its Low-Humidity Variant. In: Acta Crystallographica Section D, 54 . pp. 1343-1352.

Sadhu, Chanchal and Dutta, Santanu and Gopinathan, KP (1984) Influence of formamide on the thermal stability of DNA. In: Journal of Biosciences, 6 (6). pp. 817-821.

Sadhua, Chanchal and Datta, Santanu and Gopinathan, KP (1984) Use of S1 nuclease and formamide in combination for the reassociation studies on GC-rich DNA. In: Analytical Biochemistry, 142 (1). pp. 53-57.

Safdari, Haaris Ahsan and Pandey, Shubhi and Shukla, Arun K and Dutta, Somnath (2018) Illuminating GPCR Signaling by Cryo-EM. In: TRENDS IN CELL BIOLOGY, 28 (8). pp. 591-594.

Sagurthi, SR and Gowda, Giri and Savithri, HS and Murthy, MRN (2009) Structures of mannose-6-phosphate isomerase from Salmonella typhimurium bound to metal atoms and substrate: implications for catalytic mechanism. In: pp. 724-732.

Sagurthi, Someswar Rao and Panigrahi, Rashmi Rekha and Gowda, Giri and Savithri, HS and Murthy, MRN (2007) Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of universal stress protein F (YnaF) from Salmonella typhimurium. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 63 (11). pp. 957-960.

Sah, N and Rajput, SK and Singh, JN and Meena, CL and Jain, R and Sikdar, SK and Sharma, SS (2011) l-pGlu-(2-propyl)-l-His-l-ProNH2 attenuates 4-aminopyridine-induced epileptiform activity and sodium current: a possible action of new thyrotropin-releasing hormone analog for its anticonvulsant potential. In: Neuroscience, 199 . pp. 74-85.

Sah, N and Sikdar, SK (2012) SYNAPTIC AND NON-SYNAPTIC MECHANISMS UNDERLYING SUPPRESSION OF EPILEPTIFORM ACTIVITY IN THE SUBICULAR NEURONS OF THE HIPPOCAMPUS. In: EPILEPSIA, 53 (5, SI). p. 102.

Sah, Nirnath and Sikdar, Sujit K (2014) Tonic current through GABAA receptors and hyperpolarization-activated cyclic nucleotide-gated channels modulate resonance properties of rat subicular pyramidal neurons. In: EUROPEAN JOURNAL OF NEUROSCIENCE, 40 (1). pp. 2241-2254.

Sah, Nirnath and Sikdar, Sujit K (2013) Transition in subicular burst firing neurons from epileptiform activity to suppressed state by feedforward inhibition. In: EUROPEAN JOURNAL OF NEUROSCIENCE, 38 (4). pp. 2542-2556.

Saha, Indranil and Chatterjee, Bhaswati and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Crystal Structures of Peptide Enantiomers and Racemates: Probing Conformational Diversity in Heterochiral Pro-Pro Sequences. In: Peptide Science, 90 (4). pp. 537-543.

Saha, Piyali and Barua, Bipasha and Bhattacharyya, Sanchari and Balamurali, MM and Schief, William R and Baker, David and Varadarajan, Raghavan (2011) Design and Characterization of Stabilized Derivatives of Human CD4D12 and CD4D1. In: Biochemistry, 50 (37). pp. 7891-7900.

Saha, Piyali and Bhattacharyya, Sanchari and Kesavardhana, Sannula and Miranda, Edward Roshan and Ali, Shaik Syed P and Sharma, Deepak and Varadarajan, Raghavan (2012) Designed Cyclic Permutants of HIV-1 gp120: Implications for Envelope Trimer Structure and Immunogen Design. In: Biochemistry, 51 (9). pp. 1836-1847.

Sahal, Dinkar and Balaram, P (1986) Peptide Models of Electrostatic Interactions in Proteins: $NMR$ Studies on Two \beta - Turn Tetrapeptides Containing $Asp-His$ and $Asp-Lys$ Salt Bridges. In: Biochemistry, 25 (20). pp. 6004-6013.

Sahoo, A and Jones, AT and Cheedarla, N and Gangadhara, S and Roy, V and Styles, TM and Shiferaw, A and Walter, KL and Williams, LD and Shen, X and Ozorowski, G and Lee, W-H and Burton, S and Yi, L and Song, X and Qin, ZS and Derdeyn, CA and Ward, AB and Clements, JD and Varadarajan, R and Tomaras, GD and Kozlowski, PA and Alter, G and Amara, RR (2022) A clade C HIV-1 vaccine protects against heterologous SHIV infection by modulating IgG glycosylation and T helper response in macaques. In: Science immunology, 7 (73). eabl4102.

Sahoo, Anusmita and Khare, Shruti and Devanarayanan, Sivasankar and Jain, Pankaj C and Varadarajan, Raghavan (2016) Residue proximity information and protein model discrimination using saturation-suppressor mutagenesis. In: ELIFE, 4 .

Saikrishnan, K and Jeyakanthan, J and Venkatesh, J and Acharya, N and Purnapatre, K and Sekar, K and Varshney, U and Vijayan, M (2002) Crystallization and preliminary X-ray studies of the single-stranded DNA-binding protein from Mycobacterium tuberculosis. In: Acta Crystallographica Section D, 58 . pp. 327-329.

Saikrishnan, K and Jeyakanthan, J and Venkatesh, J and Acharya, N and Sekar, K and Varshney, U and Vijayan, M (2003) Structure of Mycobacterium tuberculosis Singlestranded DNA-binding Protein. Variability in Quaternary Structure and Its Implications. In: Journal of Molecular Biology, 331 (2). pp. 385-393.

Saikrishnan, K and Kalapala, SK and Sagar, Bidya M and Rao, AR and Varshney, U and Vijayan, M (2004) Purification, crystallization and preliminary X-ray studies of Mycobacterium tuberculosis RRF. In: Acta Crystallographica Section D, 60 . pp. 368-370.

Saikrishnan, K and Kalapala, SK and Varshney, U and Vijayan, M (2005) X-ray structural studies of Mycobacterium tuberculosis RRF and a comparative study of RRFs of known structure. Molecular plasticity and biological implications. In: Journal of Molecular Biology, 345 (1). pp. 29-38.

Saikrishnan, K and Manjunath, GP and Singh, Pawan and Jeyakanthan, J and Dauter, Z and Sekar, K and Muniyappa, K and Vijayan, M (2005) Structure of Mycobacterium smegmatis single-stranded DNA-binding protein and a comparative study involving homologus SSBs: biological implications of structural plasticity and variability in quaternary association. In: Acta Crystallographica Section D: Biological Crystallography, 61 . pp. 1140-1148.

Saikrishnan, K and Sagar, Bidya M and Ravishankar, R and Roy, S and Purnapatre, K and Handa, P and Varshney, U and Vijayan, M (2002) Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG. In: Acta Crystallographica Section D: Biological Crystallography, 58 (8). pp. 1269-1276.

Saikumari, YK and Balaram, P (2008) An internally quenched fluorescent substrate for collagenase. In: Peptide Science, 90 (2). pp. 131-137.

Saikumari, Yegnisettipalli K and Ravindra, Gudihal and Balaram, Padmanabhan (2006) Structure formation in short designed peptides probed by proteolytic cleavage. In: Protein and Peptide Letters, 13 (5). pp. 471-476.

Sainania, Mohini N and Mishra, Vinod K and Gupta, Vidya S and Ranjekar, Prabhakar K (1992) Circular dichroism and 13C nuclear magnetic resonance spectroscopy of pennisetin from pearl millet. In: Plant Science, 83 (1). pp. 15-22.

Sajjan, SU and Patanjali, SR and Surolia, A (1997) Identification of amino groups in the carbohydrate binding activity of winged bean acidic agglutinin. In: 4th International Symposium on Biochemical Role of Eukaryotic Cell Surface Macromolecules, JAN 06-10, 1996, NEW DELHI, INDIA, pp. 76-81.

Sajjan, SU and Patanjali, SR and Surolia, A (1992) Mechanism of lectin-cell interactions: thermodynamic and kinetic analysis of the binding of winged bean acidic lectin (WBA II) to human erythrocytes. In: Indian Journal of Biochemistry & Biophysics, 29 (2). pp. 219-225.

Salamat, JM and Abbott, KL and Gill, KS and Flannery, PC and Biancardi, VC and Boothe, DM and Huang, C-CJ and Mani, S and Chandran, A and Vishveshwara, S and Onteru, SK and Dhanasekaran, M and Pondugula, SR (2021) Insights into Mechanisms and Models for Studying Neurological Adverse Events Mediated by Pharmacokinetic Interactions between Clinical Drugs and Illicit Substances of Herbal and Fungal Origin. [Book Chapter]

Saleem, Q and Ganesh, S and Vijaykumar, M and Reddy, YCJ and Brahmachari, SK and Jain, Sanjeev (2000) Association analysis of 5HT transporter gene in bipolar disorder in the Indian population. In: American Journal of Medical Genetics, 96 (2). pp. 170-172.

Saleem, Quasar and Sreevidya, VS and Sudhir, J and Savithri, Vijaya J and Gowda, Y and Rao, Chandrika B and Benegal, V and Majumder, Partha P and Anand, Anuranjan and Brahmachari, Samir K and Jain, Sanjeev (2000) Association analysis of CAG repeats at the KCNN3 locus in Indian patients with bipolar disorder and schizophrenia. In: American Journal of Medical Genetics, 96 (6). pp. 744-748.

Saleem, Quasar and Vijayakumar, M and Mutsuddi, Mousumi and Chowdhary, Neerja and Jain, Sanjeev and Brahmachari, Samir K (1998) Variation at the MJD locus in the major psychoses. In: American Journal of Medical Genetics, 81 (5). pp. 440-442.

Saleem, Q and Dash, D and Gandhi, C and Kishore, A and Benegal, V and Sherrin, T and Mukherjee, O and Jain, S and Brahmachari, SK (2001) Association of CAG repeat loci on chromosome 22 with schizophrenia and bipolar disorder. In: Molecular Psychiatry, 6 (6). pp. 694-700.

Saleem, Quasar and Anand, Anuranjan and Jain, Sanjeev and Brahmachari, Samir K (2001) The polyglutamine motif is highly conserved at the Clock locus in various organisms and is not polymorphic in humans. In: Human Genetics, 109 (2). pp. 136-142.

Saleem, Quasar and Choudhry, Shweta and Mukerji, Mitali and Bashyam, Leena and Padma, Madakasira V and Chakravarthy, Ambar and Maheshwari, Mool Chand and Jain, Satish and Brahmachari, Samir K (2000) Molecular analysis of autosomal dominant hereditary ataxias in the Indian population: high frequency of SCA2 and evidence for a common founder mutation. In: Human Genetics, 106 (2). pp. 179-187.

Salunke, DM and Kodandapani, R and Vijayan, M (1984) Environmental-Effects On Water-Mediated Transformations In The Crystals Of Ribonuclease-A. In: Acta Crystallographica Section A, 40 . C53-C53.

Salunke, DM and Khan, Islam M and Surolia, A and Vijayan, M (1983) Preparation and preliminary x-ray studies of three acidic pH crystal forms of the anti-T lectin from peanut (Arachis hypogaea). In: FEBS Letters, 156 (1). pp. 127-129.

Salunke, DM and Khan, M Islam and Surolia, A and Vijayan, M (1982) Crystallization and preliminary X-ray studies of the anti-T lectin from peanut (Arachis hypogaea). In: Journal of Molecular Biology, 154 (1). pp. 177-178.

Salunke, DM and Veerapandian, B and R. Kodandapani, R and Vijayan, M (1985) Structural Transformations in Protein Crystals caused by controlled Dehydration. In: Journal of Bioscience, 8 (1-2). pp. 37-44.

Salunke, DM and Vijayan, M (1982) L-Arginine L-aspartate. In: Acta Crystallographica Section B, 38 . pp. 1328-1330.

Salunke, DM and Vijayan, M (1982) N-Acetylglycyl-L-lysine methyl ester acetate. In: Acta Crystallographica Section B, 38 . pp. 287-289.

Salunke, DM and Vijayan, M (1982) N-Acetylglycyl-L-lysine methyl ester acetate. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 38 (1). pp. 287-289.

Salunke, DM and Vijayan, M (1979) Preliminary-X_Ray studies on n-Acetylglycyl-L-Lysine methyl-ester acetate, l-ArginiteL-Asparate and L-Ornithinen L-Asparate. In: Current Science (Bangalore), 48 (24). p. 1071.

Salunke, DM and Vijayan, Professor M (1981) specific interactions involving guanidyl group observed in crystal-structures. In: International Journal of Peptide and Protein Research International Journal of Peptide and Protein Research, 18 (4). pp. 348-351.

Salunke, Dinakar M and Swamy, Joginadha M and Khan, Islam M and Mande, Sekhar C and Surolia, Avadhesha and Vijayan, Mamannamana (1985) Arrangement of Subunits in Peanut Lectin. In: The Journal of Biological Chemistry, 260 (25). pp. 13576-13579.

Salunke, Dinakar M and Vijayan, Mamannamana (1984) Conformational analysis of D-pantothenic acid. In: Biochimica et Biophysica Acta (BBA) - General Subjects, 798, (2). pp. 180-186.

Salunke, Dinakar M and Vijayan, Mamannamana (1984) Crystal structure of the amino acid-vitamin complex lysine pantothenatestar, open. In: Biochimica et Biophysica Acta (BBA) - General Subjects, 798 (2). pp. 175-179.

Samanta, Moumita and Banerjee, Mousumi and Murthy, Mathur RN and Balaram, Hemalatha and Balaram, Padmanabhan (2011) Probing the role of the fully conserved Cys126 in triosephosphate isomerase by site-specific mutagenesis - distal effects on dimer stability. In: FEBS Journal, 278 (11). pp. 1932-1943.

Samanta, Moumita and Murthy, MRN and Balaram, Hemalatha and Balaram, Padmanabhan (2011) Revisiting the Mechanism of the Triosephosphate Isomerase Reaction: The Role of the Fully Conserved Glutamic Acid 97 Residue. In: ChemBioChem, 12 (12). pp. 1885-1895.

Sambarey, Awanti and Devaprasad, Abhinandan and Baloni, Priyanka and Mishra, Madhulika and Mohan, Abhilash and Tyagi, Priyanka and Singh, Amit and Akshata, JS and Sultana, Razia and Buggi, Shashidhar and Chandra, Nagasuma (2017) Meta-analysis of host response networks identifies a common core in tuberculosis. In: npj Systems Biology and Applications, 3 (1). ISSN 2056-7189

Sambarey, Awanti and Prashanthi, Karyala and Chandra, Nagasuma (2013) Mining large-scale response networks reveals `topmost activities' in Mycobacterium tuberculosis infection. In: SCIENTIFIC REPORTS, 3 .

Sameer, S Velanker and Soumya, S Ray and Rajesh, S Gokhale and Suma, S and Hemalatha, Balaram and Balaram, P and Murthy, MRN (1997) Triosephosphate isomerase from Plasmodium falciparum:. the crystal structure provides insights into antimalarial drug design. In: Structure, 5 (6). pp. 751-761.

Samir, K and Brahmachari, TN and Bhat, V and Sudhakar, M and Vijayan, RS and Rapaka, RS and Bhatnagar, V and Ananthanarayanan, S (1981) beta.-Turn conformation of N-acetyl-L-prolylglycyl-L-phenylalanine. Crystal structure and solution studies. In: Journal Of The American Chemical Society, 103 (7). pp. 1703-1708.

Sampath, DS and Balaram, P (1986) Rapid procedure for the resolution of racemic gossypol. In: Journal of the Chemical Society, Chemical Communications (9). pp. 649-650.

Sampath, DS and Balaram, Padmanabhan (1986) Resolution of racemic gossypol and interaction of individual enantiomers with serum albumins and model peptides. In: Biochimica et Biophysica Acta, 882 (2). pp. 183-186.

Sampath, DS and Whaley, Kevin J and Balaram, P (1984) A circular dichroism study of (+) gossypol binding to proteins. In: Biochemical and Biophysical Research Communications, 121 (3). 953 -959.

Sampath, Vinaya and Rekha, Nambudiry and Srinivasan, N and Sadhale, Parag (2003) The Conserved and Non-conserved Regions of Rpb4 Are Involved in Multiple Phenotypes in Saccharomyces cerevisiae. In: The Journal of Biological Chemistry, 278 (51). pp. 51566-51576.

Sampathkumar, Rangasamy and Balasubramanyam, Muthuswamy and Sudarslal, Sadasivannair and Rema, Mohan and Mohan, Viswanthan and Balaram, Padmanabhan (2005) Increased glutathionylated hemoglobin (HbSSG) in type 2 diabetes subjects with microangiopathy. In: Clinical Biochemistry, 38 (10). pp. 892-899.

Sanadi, AR and Surolia, A (1994) Studies on a chitooligosaccharide-specific lectin from Coccinia indica. Thermodynamics and kinetics of umbelliferyl glycoside binding. In: Journal of Biological Chemistry, 269 (7). pp. 5072-5077.

Sanadi, Ashok R and Ananthram, Vellareddy and Surolia, Avadhesha (1998) Elucidation of the combining site of Coccinia indica agglutinin (CIA) by thermodynamic analyses of its ligand binding. In: Pure and Applied Chemistry, 70 (03). pp. 677-686.

Sandhya, S and Chakrabarti, S and Abhinandan, KR and Sowdhamini, R and Srinivasan, N (2005) Assessment of a rigorous transitive profile based search method to detect remotely similar proteins. In: Journal of Biomolecular Structure & Dynamics, 23 (3). pp. 283-298.

Sandhya, S and Kishore, S and Sowdhamini, R and Srinivasan, N (2003) Effective detection of remote homologues by searching in sequence dataset of a protein domain fold. In: FEBS Letters, 552 (2-3). pp. 225-230.

Sandhya, S and Mudgal, R and Jayadev, C and Abhinandan, KR and Sowdhamini, R and Srinivasan, N (2012) Cascaded walks in protein sequence space: use of artificial sequences in remote homology detection between natural proteins. In: MOLECULAR BIOSYSTEMS, 8 (8). pp. 2076-2084.

Sandhya, Sankaran and Maulik, Aditi and Giri, Malyasree and Singh, Mahavir (2018) Domain architecture of BAF250a reveals the ARID and ARM-repeat domains with implication in function and assembly of the BAF remodeling complex. In: PLOS ONE, 13 (10).

Sandhya, Sankaran and Mudgal, Richa and Kumar, Gayatri and Sowdhamini, Ramanathan and Srinivasan, Narayanaswamy (2016) Protein sequence design and its applications. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 37 . pp. 71-80.

Sandhya, Sankaran and Pankaj, Barah and Govind, Madabosse Kande and Offmann, Bernard and Srinivasan, Narayanaswamy and Sowdhamini, Ramanathan (2008) CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations. In: BMC Structural Biology, 8 (28).

Sangita, V and Lokesh, GL and Satheshkumar, PS and Vijay, CS and Saravanan, V and Savithri, HS and Murthy, MRN (2004) T=1 Capsid Structures of Sesbania Mosaic Virus Coat Protein Mutants: Determinants of T=3 and T=1 Capsid Assembly. In: Journal of Molecular Biology, 342 (3). pp. 987-999.

Sangita, V and Lokesh, GL and Satheshkumar, PS and Saravanan, V and Vijay, CS and Savithri, HS and Murthy, MRN (2005) Structural studies on recombinant T=3 capsids of Sesbania mosaic virus coat protein mutants. In: Acta Crystallographica Section D: Biological Crystallography, 61 (Part 1). pp. 1402-1405.

Sangita, V and Parthasarathy, S and Toma, S and Lokesh, GL and Gowri, TDS and Satheshkumar, PS and Savithri, HS and Murthy, MRN (2002) Determination of the structure of the recombinant T = 1 capsid of Sesbania mosaic virus. In: Current Science, 82 (9). pp. 1123-1131.

Sangita, V and Satheshkumar, PS and Savithri, HS and Murthy, MRN (2005) Structure of a mutant T=1 capsid of Sesbania mosaic virus: role of water molecules in capsid architecture and integrity. In: Acta Crystallographica Section D: Biological Crystallography, 61 (Part 1). pp. 1406-1412.

Sanjeev, BS and Patra, SM and Vishveshwara, S (2001) Sequence design in lattice models by graph theoretical methods. In: Journal of Chemical Physics, 114 (4). pp. 1906-14.

Sanjeev, BS and Vishveshwara, S (2004) Conformational Transitions in Eosinophil Cationic Protein: A Molecular Dynamics Study in Aqueous Environment. In: Journal of Biomolecular Structure and Dynamics, 22 (2). pp. 171-182.

Sanjeev, BS and Vishveshwara, S (2005) Dynamics of the Native and the Ligand-bound Structures of Eosinophil Cationic Protein: Network of Hydrogen Bonds at the Catalytic Site. In: Journal of Biomolecular Structure & Dynamics, 22 (6). pp. 657-672.

Sanjeev, BS and Vishveshwara, S (2002) Essential dynamics and sidechain hydrogen bond cluster studies on eosinophil cationic protein. In: European Physical Journal D (EPJ D), The - Atomic,Molecular and Optical Physics, 20 (3). pp. 601-608.

Sanjeev, BS and Vishveshwara, S (2004) Protein–Water Interactions in Ribonuclease A and Angiogenin: A Molecular Dynamics Study. In: Proteins: Structure, Function, and Bioinformatics, 55 (4). pp. 915-923.

Sankar, PV and Chakrabarti, S and Krishnamurthy, EV (1973) Arithmetic Algorithms in a Negative Base. In: IEEE Transactions on Computers, 22 (2). pp. 120-125.

Sankar, PV and Chakrabarti, S and Krishnamurthy, EV (1973) Deterministic Division Algorithm in a Negative Base. In: IEEE Transactions on Computers, 22 (2). pp. 125-128.

Sankar, PV and Krishnamurthy, EV (1973) Error correction in nonbinary words. In: Proceedings of the IEEE, 61 (4). 507- 508.

Sankar, PV and Krishnamurthy, EV and Krishnan, S (1974) Representation of Stereoisomers in ALWIN. In: Journal of Chemical Documentation, 14 (3). pp. 141-146.

Sankara-Ramakrishnan, R and Vishveshwara, Saraswathi (1989) A hydrogen bonded chain in bactereorhodopsin by computer modeling approach. In: Journal of Biomolecular Structure & Dynamics, 7 (1). pp. 187-205.

Sankaram, MB and Easwaran, KRK (1985) Paramagnetic probes in membrane biophysics. In: Journal of Chemical Sciences, 95 (1-2). pp. 103-115.

Sankaram, MB and Easwaran, KRK (1985) Solution conformations of valinomycin-divalent cation complexes. In: International Journal of Peptide Protein Research, 25 (6). pp. 585-593.

Sankaram, MB and Easwaran, KRK (1982) CD and NMR Studies on the Interaction of Lithium Ion with Valinomycin and Gramicidin-S. In: Biopolymers, 21 (8). pp. 1557-1567.

Sankaram, MB and Easwaran, KRK (1982) Interaction of manganese(II) with valinomycin: Observation of mixed complexes. In: Biochemical and Biophysical Research Communications, 106 (2). pp. 319-324.

Sankaram, MB and Easwaran, KRK (1984) Location of valinomycin in lipid vesicles. In: Journal of Biosciences, 6 (5). pp. 635-642.

Sankaram, MB and Shastri, BP and Easwaran, KRK (1985) Mechanisms of transmembrane cation transport studied by nuclear magnetic resonance spectroscopy. In: Journal of Biosciences, 8 (1-2). pp. 343-354.

Sankaram, Mantripragada B and Shastri, Bhamidipati P and Easwaran, Kalpathy RK (1987) Interaction of carrier ionophores with phospholipid vesicles. In: Biochemistry, 26 (16). pp. 4936-4941.

Sankaranarayan, R and Puri, KD and Ganesh, V and Banerjee, R and Surolia, A and Vijayan, M (1993) Crystallization and Preliminary X-ray Studies of the Basic Lectin from Winged Bean (Psophocarpus tetragonolobus). In: Journal of Molecular Biology, 229 (2). pp. 558-560.

Sankaranarayanan, R and Biswal, BK and Vijayan, M (2005) A new relaxed state in horse methemoglobin characterized by crystallographic studies. In: Proteins: Structure, Function, and Bioinformatics, 60 (3). pp. 547-551.

Sankaranarayanan, R and Yogavel, M and Velmurugan, D and Sekar, K and Babu, G and Perumal, PT and Raj, Shanmuga Sundara S and Fun, HK (2003) 8-Chloro-4-[1-(phenylsulfonyl)indol-3-yl]-3a,4,5,9b-tetrahydro-3H-cyclopenta[c]quinoline. In: Acta Crystallographica Section E: Structure Reports Online, 59 (1). 049-051.

Sankaranarayanan, R and Yogavel, M and Velmurugan, D and Sekar, K and Srinivasan, PC and Raj, Shanmuga Sundara S and Fun, Hoong-Kun (2003) 1,2-Bis[1-phenylsulfonyl-3-(phenylthio)indol-2-yl]ethene. In: Acta Crystallographica Section E-Structure Reports Online, 59 (1). O99-O101.

Sankaranarayanan, R and Yogavel, M and Velmurugan, D and Srinivasan, PC and Raj, Shanmuga Sundara S and Fun, Hoong-Kun (2003) 2-[2-(5-Ethoxy-4-methoxy-2-nitrophenyl)vinyl]-1H-indole. In: Acta Crystallographica Section E-Structure Reports Online, 59 . O672-O674.

Sankaranarayanan, Rajan and Sekar, Kanakaraj and Banerjee, Rahul and Vivek, Sharma and Surolia, Avadhesha and Vijayan, Mamannamana (1996) A Novel mode of Carbohydrate Recognition in Jacalin, Moraceae Plant Lectin with a Beta-Prism Fold. In: Nature Structural Biology, 3 (7). pp. 596-603.

Sankarapandi, S and Sukumar, M and Balaram, P and Manoharan, PT (1995) Biradicals as ESR Probes of Conformations in Model \beta-turn Peptides. In: Biochemical and Biophysical Research Communications, 213 (2). pp. 439-446.

Sankararamakrishnan, R and Vishveshwara, S (1992) The structures of bacteriorhodopsin with different retinal-Schiff base orientations--computer modeling and energy minimization studies. In: Journal of Biomolecular Structure & Dynamics, 9 (6). pp. 1073-1095.

Sankararamakrishnan, R and Vishveshwara, Saraswathi (1993) Characterization of Proline-Containing a-Helix (Helix F Model of Bacteriorhodopsin) by Molecular Dynamics Studies. In: Proteins: Structure, Function, and Genetics, 15 (1). pp. 26-41.

Sankararamakrishnan, R and Vishveshwara, Saraswathi (1990) Conformational Studies on Peptides with Proline in the Right-Handed \alpha -Helical Region. In: Biopolymers, 30 (3-4). pp. 287-298.

Sankhe, GD and Raja, R and Singh, DP and Bheemireddy, S and Rana, S and Athira, PJ and Dixit, NM and Saini, DK (2023) Sequestration of histidine kinases by non-cognate response regulators establishes a threshold level of stimulation for bacterial two-component signaling. In: Nature Communications, 14 (1).

Sankhe, Gaurav D and Dixit, Narendra M and Saini, Deepak K (2018) Activation of Bacterial Histidine Kinases: Insights into the Kinetics of the cis Autophosphorylation Mechanism. In: MSPHERE, 3 (3).

Sansom, MS and Balaram, P and Karle, IL (1993) Ion channel formation by zervamicin-IIB. A molecular modelling study. In: European Biophysics Journal, 21 (6). 369 -383.

Saraswathi, NT and Manoj, N and Vijayan, M (2001) X-ray studies on crystalline complexes involving amino acids and peptides. XXXVII. Novel aggregation patterns and effect of chirality in the complexes of DL- and L-lysine with glutaric acid. In: Acta Crystallographica Section B, 57 . pp. 366-371.

Saraswathi, NT and Roy, Siddhartha and Vijayan, M (2003) X-ray studies on crystalline complexes involving amino acids and peptides. XLI. Commonalities in aggregation and conformation revealed by the crystal structures of the pimelic acid complexes of L-arginine and DL-lysine. In: Acta Crystallographica Section B, 59 . pp. 641-646.

Saraswathi, NT and Sankaranarayanan, R and Vijayan, M (2002) Effect of stabilizing additives on the structure and hydration of proteins: a study involving monoclinic lysozyme. In: Acta Crystallographica Section D: Biological Crystallography, 58 (7). pp. 1162-1167.

Saraswathi, NT and Vijayan, M (2002) X-ray studies on crystalline complexes involving amino acids and peptides. XL. Conformational variability, recurring and new features of aggregation, and effect of chirality in the malonic acid complexes of DL- and L-arginine. In: Acta Crystallographica Section B, 58 . pp. 1051-1056.

Saraswathi, NT and Vijayan, M (2002) X-ray studies on crystalline complexes involving amino acids and peptides. XXXIX. crystal structures of malonic acid complexes of DL- and L-histidine. preservation of aggregation pattern on reversal of chirality. In: Acta Crystallographica Section B, 58 (4). pp. 734-739.

Saraswathi, NT and Vijayan, M (2001) X-ray studies on crystalline complexes involving amino acids and peptides. XXXVIII. Crystal structures of the complexes of L-arginine and L-histidine with glutaric acid and a comparative study of amino acid-glutaric acid complexes. In: Acta Crystallographica Section B, 57 . pp. 842-849.

Saraswathi, Ramachandran and Chowdhury, Rakhi Pait and Williams, Sunanda Margrett and Ghatak, Payel and Chatterji, Dipankar (2009) The Mycobacterial MsDps2 Protein Is a Nucleoid-Forming DNA Binding Protein Regulated by Sigma Factors sigma(A) and sigma(B). In: PLoS ONE, 4 (11).

Sarikhani, Mohsen and Mishra, Sneha and Desingu, Perumal Arumugam and Kotyada, Chaithanya and Wolfgeher, Donald and Gupta, Mahesh P and Singh, Mahavir and Sundaresan, Nagalingam R (2018) SIRT2 regulates oxidative stress-induced cell death through deacetylation of c-Jun NH2-terminal kinase. In: CELL DEATH AND DIFFERENTIATION, 25 (9). pp. 1638-1656.

Sarikhani, Mohsen and Mishra, Sneha and Maity, Sangeeta and Kotyada, Chaithanya and Wolfgeher, Donald and Gupta, Mahesh P and Singh, Mahavir and Sundaresan, Nagalingam R (2018) SIRT2 deacetylase regulates the activity of GSK3 isoforms independent of inhibitory phosphorylation. In: ELIFE, 7 .

Sarkar, Partha S and Brahmachari, Samir K (1992) Intramolecular triplex potential sequence within a gene down regulates its expression in vivo. In: Nucleic Acids Research, 20 (21). pp. 5713-5718.

Sarkar, B and Mahapa, A and Dey, K and Manhas, R and Chatterji, D and Jayaraman, N (2023) Aza-Michael promoted glycoconjugation of PETIM dendrimers and selectivity in mycobacterial growth inhibitions. In: RSC Advances, 13 (7). pp. 4669-4677.

Sarkar, Biswajit and Mahapa, Avisek and Chatterji, Dipankar and Jayaraman, Narayanaswamy (2019) Sugar Vinyl Sulfoxide Glycoconjugation of Peptides and Lysozynne: Abrogation of Proteolysis at the Lysine Sites. In: BIOCHEMISTRY, 58 (34). pp. 3561-3565.

Sarkar, M and Paul, A and Das, DR (2022) Availing engineered and biosynthesized metal-based nanoparticles to alleviate abiotic stress. [Book Chapter]

Sarkar, Paramita and Sardesai, Abhijit A and Murakami, Katsuhiko S and Chatterji, Dipankar (2013) Inactivation of the Bacterial RNA Polymerase Due to Acquisition of Secondary Structure by the omega Subunit. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 288 (35). pp. 25076-25087.

Sarkar, Parthas S and Bagga, Rajesh and Balagurumoorthy , P and Bramachari, Samir K (1991) A novel approach to design of cis-acting DNA structural element for regulation of gene expression in vivo. In: Current Science (Bangalore), 60 (9-10). pp. 586-591.

Sarkar, SN and Sikdar , SK (1994) High level stable expression of rat brain type IIA sodium channel ?-subunit in CHO cells. In: Current science (Bangalore), 67 (3). 196 -199 .

Sarkar, Saumendra N and Adhikari, Arunabha and Sikdar, SK (1995) Kinetic characterization of rat brain type IIA sodium channel alpha-subunit stably expressed in a somatic cell line. In: The Journal of Physiology, 488 (3). pp. 633-645.

Sarkar, Saumendra N and Balasubramanian, SV and Sikdar, SK (1993) Effect of fenvalerate, a pyrethroid insecticide on membrane fluidity. In: Biochimica et Biophysica Acta (BBA) - Biomembranes, 1147 (1). pp. 137-142.

Sarkar, Saumendra N and Haldar, S and Sikdar, SK (1993) Effect of the pyrethroid insecticide fenvalerate on sodium current of rat dorsal root ganglion neuron. In: Current Science (Bangalore), 64 (4). pp. 260-262.

Sarma, Siddhartha P (2003) Determination of Structures of Proteins in Solution using Nuclear Magnetic Resonance. In: Resonance: Journal of Science Education, 8 (8). pp. 86-99.

Sarma, Siddhartha P (2002) NMR - Bigger, stronger, faster ... In: Current Science (Bangalore), 83 (11). pp. 1304-1306.

Sarma, Siddhartha P and Kumar, G Senthil and Sudarslal, S and Iengar, Prathima and Ramasamy, P and Sikdar, Sujit K and Krishnan, KS and Balaram, Padmanabhan (2005) Solution structure of $\delta$-Am2766: A highly hydrophobic $ \delta$-conotoxin from Conus amadis that inhibits inactivation of neuronal voltage-gated sodium channels. In: Chemistry & Biodiversity, 2 (4). pp. 535-556.

Sarma, Siddhartha P and Senthil Kumar, G and Sudarslal, S and Iengar, Prathima and Ramasamy, P and Sikdar, Sujit K and Krishnan, KS and Balaram, Padmanabhan (2005) Solution structure of Am2766: A highly hydrophobic d-conotoxin from Conus amadis that inhibits inactivation of brain voltage gated sodium channels. In: Chemistry & Biodiversity, 2 (4). pp. 535-556.

Sarojini, Vijayalekshmi and Rao, Balaji R and Ragothama, S and Balaram, Padmanabhan (2010) Solution conformation of a tetradecapeptide stabilized by two di-n-propyl glycine residues. In: Journal of Peptide Science, 16 (8). pp. 430-436.

Sasisekaran, V (1982) Left-handed DNA duplexes. In: Cold Spring Harbor Symposia on Quantitative Biology, 47 (1). pp. 45-52.

Sasisekharan, V and Bansal, M (1990) Self-similarity and the assembly of collagen molecules. In: Current Science, 59 (17-18). pp. 863-866.

Sasisekharan, V (1979) Conformational fexibility of polynucleotide-molecular-structure of DNA. In: Abstracts of Papers - American Chemical Society, National Meeting (SEP). p. 15.

Sasisekharan, V (1979) Conformational flexibility of polynucleotide-molecular-structure of DNA. In: Abstracts of Papers - American Chemical Society, National Meeting (SEP). p. 15.

Sasisekharan, V (1981) Dna And Handedness. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 21.

Sasisekharan, V (1981) Structure of dna reexamined. In: Hoppe-Seyler's Zeitschrift für Physiologische Chemie, 362 (3). pp. 233-234.

Sasisekharan, V (1986) A new method for generation of quasi-periodic structures withn fold axes: Application to five and seven folds. In: Pramana, 26 (3). L283-L293.

Sasisekharan, V and Balaji, VN (1979) Fourfold Helical Structures for Polypeptides. In: Macromolecules, 12 (1). 28-32 .

Sasisekharan, V and Bansal, Manju and Gupta, Goutam (1981) A need for re-examination of the fibre diffraction data of A-DNA. In: Biochemical and Biophysical Research Communications, 102 (3). pp. 1087-1095.

Sasisekharan, V and Baranidharan, S and Balagurusamy, VSK and Srinivasan, A and Gopal, ESR (1989) Non-periodic tilings in 2-dimensions with 4, 6, 8, 10 and 12-fold symmetries. In: Pramana - Journal of Physics, 33 (3). pp. 405-420.

Sasisekharan, V and Baranidharan, S and Gopal, ESR and Sundaramoorthy, M and Sekhar, JA (1988) X-ray diffraction from single Al6CuLi3 grains showing five-fold symmetry. In: Pramana - Journal of Physics, 30 (4). L347-L353.

Sasisekharan, V and Brahmachari, Samir K (1981) B-Transition To Z-Transition In Dna Fiber - The Question Of Handedness Of The Duplex. In: Current Science (Bangalore), 50 (1). pp. 10-13.

Sasisekharan, V and Gupta, Goutam and Bansal, Manju (1981) Sequence-dependent molecular conformation of polynucleotides: right and left-handed helices. In: International Journal of Biological Macromolecules, 3 (1). pp. 2-8.

Sasisekharan, V and Pattabiraman, N (1976) Double standard polynucleotides: two typical alternative conformations for nucleic acids. In: Current science, 45 (2). pp. 789-783.

Sasisekharan, V and Pattabiraman , N and Gupta , G (1978) Alternative Structure for DNA - Mode of Replication and Formation of Super Structures. In: Indian Journal of Biochemistry & Biophysics, 15 (2). 47-47 .

Sasisekharan, V and Pattabiraman, N and Gupta , G (1978) Some implications of an alternative structure for DNA. In: Proc Natl Acad Sci Unit States Am, 75 (9). 4092-4096 .

Sastri, Mira and Reddy D, Srihari and Krishna, Sri S and Murthy, MRN and Savithri, HS (1999) Identification of a discrete intermediate in the assembly disassembly of physalis mottle tymovirus through mutational analysis. In: Journal of Molecular Biology, 289 (4). pp. 905-918.

Sastry, Krishna MV and Surolia, A (1986) Intrinsic Fluorescence Studies on Saccharide Binding to Artocarpus Integrifolia Lectin. In: Bioscience Reports, 6 (10). pp. 853-860.

Sastry, MV and Banarjee, Probal and Patanjali, Sankhavaram R and Swamy, Joginadha M and Swarnalatha, GV and Surolia, Avadhesha (1986) Analysis of Saccharide Binding to Artocarpus integrifolia Lectin Reveals Specific Recognition of T-antigen (\beta D-Gal(1\rightarrow 3)GalNAc. In: Journal of Biological Chemistry, 261 (25). pp. 11726-11733.

Satheshkumar, PS and Nair, Smita and Gayathri, P and Murthy, MRN and Savithri, HS (2008) Structure and function of Sesbania mosaic virus serine protease domain. In: Indian Journal Of Virology, 19 (1). pp. 59-60.

Satheshkumar, PS and Lokesh, GL and Murthy, MRN and Savithri, HS (2005) The role of arginine-rich motif and beta-annulus in the assembly andstability of sesbania mosaic virus capsids. In: Journal of Molecular Biology, 353 (2). pp. 447-458.

Satheshkumar, PS and Lokesh, GL and Sangita, V and Saravanan, V and Vijay, CS and Murthy, MRN and Savithri, HS (2004) Role of Metal Ion-mediated Interactions in the Assembly and Stability of Sesbania Mosaic Virus T=3 and T=1 Capsids. In: Journal of Molecular Biology, 342 (3). pp. 1001-1014.

Satheshkumar, Panayampalli Subbian and Gayathri, Pananghat and Prasad, Kasaragod and Savithri, Handanahal Subbarao (2005) "Natively Unfolded" VPg Is Essential for Sesbania Mosaic Virus Serine Protease Activity. In: Journal of Biological Chemistry, 280 (34). pp. 30291-30300.

Sathisha, GJ and Prakash, Subrahmanya YK and Chachadi, VB and Nagaraja, NN and Inamdar, SR and Leonidas, D and Savithri, HS and Swamy, BM (2008) X-ray sequence ambiguities of Sclerotium rolfsii lectin resolved by mass spectrometry. In: Amino Acids, 35 (2). pp. 309-320.

Sathyana, BK and Rao, VSR (1973) Conformation Studies Of Pectic Acid. In: Current Science (Bangalore), 42 (22). pp. 773-775.

Sathyapriya, R and Brinda, KV and Vishveshwara, Saraswathi (2006) Correlation of the Side-Chain Hubs with the Functional Residues in DNA Binding Protein Structures. In: Journal of Chemical Information and Modeling, 46 (1). pp. 123-129.

Sathyapriya, R and Vishveshwara, Saraswathi (2004) Interaction of DNA with clusters of amino acids in proteins. In: Nucleic Acids Research, 32 (14). pp. 4109-4118.

Sathyapriya, R and Vishveshwara, Saraswathi (2007) Structure Networks of E. coli Glutaminyl-tRNA Synthetase: Effects of Ligand Binding. In: PROTEINS: Structure, Function, and Bioinformatics, 68 . pp. 541-550.

Satish, PR and Surolia, Avadhesha (2002) Preparation and Characterization of Glycolipid-Bearing Multilamellar and Unilamellar Liposomes. In: Methods in Molecular Biology, 199 . pp. 193-202.

Satish, Posettihalli R and Surolia, Avadhesha (2001) Exploiting lectin affinity chromatography in clinical diagnosis. In: Journal of Biochemical and Biophysical Methods, 49 (1-3). pp. 625-640.

Satyamurty, P and Hosur, MV and Misquith, S and Surolia, A and Kannan, KK (1994) Crystallization of a SCRIP-Gelonin Isolated From Plant Seeds Gelonium multiforum. In: Proteins: Structure, Function, and Genetics, 19 (4). pp. 340-342.

Savithri, HS and Murthy, MRN (1983) Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus. In: Journal of Biosciences, 5 (3). pp. 183-187.

Savithri, HS and Murthy, MRN (2010) Structure and assembly of Sesbania mosaic virus. In: Current Science (Bangalore), 98 (3). pp. 346-351.

Savithri, HS and Suryanarayana, S and Murthy, MNR (1989) Structure-function relationships of icosahedral plant. In: Archives of Virology, 109 (3-4). pp. 153-172.

Savithri, HS and Suryanarayana, S and Murthy, MRN (1989) Structure-function relationships of icosahedral plant viruses. In: Archives of Virology, 109 (3-4). pp. 153-172.

Schellenberger, U and Balaram, P and Francis, VSNK and Shoichet, BK and Santi, Daniel V (1994) Partial Restoration of Activity to Lactobacillus casei Thymidylate Synthase following Inactivation by Domain Deletion. In: Biochemistry, 33 (18). pp. 5623-5629.

Schnur, JM and Ratna, BR and Selinger, JV and Singh, A and Jyothi, G and Easwaran, KRK (1994) Diacetylenic lipid tubules:experimental evidence for a chiral molecular architecture. In: Science, 264 (5161 ). pp. 945-947.

Schwarz, FP and Misquith, S and Surolia, Avadhesha (1996) Effect of substituent on the thermodynamics of D-glucopyranoside binding to concanavalin A, pea (Pisum sativum) lectin and lentil (Lens culinaris) lectin. In: Biochemical Journal, 316 (Pt 1). pp. 123-129.

Schwarz, FP and Puri, K and Surolia, A (1991) Thermodynamics of the binding of galactopyranoside derivatives to the basic lectin from winged bean (Psophocarpus tetrogonolobus). In: Journal of Biological Chemistry, 266 (36). pp. 24344-24350.

Schwarz, FP and Puri, KD and Bhat, RG and Surolia, A (1993) Thermodynamics of monosaccharide binding to concanavalin A, pea (Pisum sativum) lectin, and lentil (Lens culinaris) lectin. In: Journal of Biological Chemistry, 268 (11). pp. 7668-7677.

Seenivasan, P and Basak, R and Narayanan, R (2024) Cross-strata co-occurrence of ripples with theta-frequency oscillations in the hippocampus of foraging rats. In: Journal of Physiology .

Seenivasan, P and Narayanan, R (2022) Efficient information coding and degeneracy in the nervous system. In: Current Opinion in Neurobiology, 76 .

Seenivasan, P and Narayanan, R (2020) Efficient phase coding in hippocampal place cells. In: Physical Review Research, 2 (3).

Seenivasan, Pavithraa and Menon, Shakti N and Sridhar, S and Sinha, Sitabhra (2016) When the clock strikes: Modeling the relation between circadian rhythms and cardiac arrhythmias. In: 27th IUPAP Conference on Computational Physics (CCP), DEC 02-05, 2015, Guwahati, INDIA.

Seethalakshmi, T and Kaliannan, P and Venkatesan, P and Fronczek, FR and Thamotharan, S (2006) 4-Amino-(1-methylphenyl)pyridinium bromide. In: Acta Crystallographica Section E-Structure Reports Online, 62 (6). O2353- O2355.

Seethalakshmi, T and Puratchikody, A and Lynch, Daniel E and Kaliannan, P and Thamotharan, * (2006) 2-(2-Methylphenyl)-4,5-diphenyl-1H-imidazole. In: Acta Crystallographica Section E-Structure Reports Online, 62 (7). O2803-O2804.

Seethalakshmi, T and Venkatesan, P and Fronczek, FR and Kaliannan, P and Thamotharan, S (2006) 4-Amino-(1-ethoxycarbonylmethyl)pyridinium iodide. In: Acta Crystallographica Section E-Structure Reports Online, 62 (6). O2560-O2562.

Sehgal, Neha and Gupta, Alok and Valli, Rupanagudi Khader and Joshi, Shanker Datt and Mills, Jessica T and Hamel, Edith and Khanna, Pankaj and Jain, Subhash Chand and Thakur, Suman S and Ravindranath, Vijayalakshmi (2012) Withania somnifera reverses Alzheimer's disease pathology by enhancing low-density lipoprotein receptor-related protein in liver. In: Prpceedings of the National Academy of Sciences of The United States of America, 109 (9). pp. 3510-3515.

Sekar, K and Mala, Vaijayanthi S and Yogavel, M and Velmurugan, D and Poi, Ming-Jye and Vishwanath, BS and Gowda, TV and Jeyaprakash, Arokia A and Tsai, MD (2003) Crystal Structures of the Free and Anisic Acid Bound Triple Mutant of Phospholipase $A_2$. In: Journal of Molecular Biology, 333 (2). pp. 367-376.

Sekhar, Ashok and Kay, Lewis E (2019) An NMR View of Protein Dynamics in Health and Disease. In: Annual Review of Biophysics, 48 . pp. 297-319.

Sekharudu, YC and Rao, VS (1984) The modes of binding methyl-alpha (and beta)-D-glucopyranosides and some of their derivatives to concanavalin A--a theoretical approach. In: Journal of Biomolecular Structure and Dynamics, 2 (1). pp. 41-54.

Sekharudu, Chandra Y and Rao, VSR (1984) Theoretical studies on the modes of binding of some of the derivatives of D-mannose to concanavalin A. In: International Journal of Biological Macromolecules, 6 (6). pp. 337-347.

Sekharudu, Y Chandra and Biswas, Margaret and Rao, VSR (1986) Complex carbohydrates: 2. The modes of binding of complex carbohydrates to concanavalin A - a computer modelling approach. In: International Journal of Biological Macromolecules, 8 (1). pp. 9-19.

Selmke, Benjamin and Borbat, Peter P and Nickolaus, Chen and Varadarajan, Raghavan and Freed, Jack H and Trommer, Wolfgang E (2018) Open and Closed Form of Maltose Binding Protein in Its Native and Molten Globule State As Studied by Electron Paramagnetic Resonance Spectroscopy. In: BIOCHEMISTRY, 57 (38). pp. 5507-5512.

Selot, Ruchita and Balakrishnan, Balaji and Cheemadan, Sabna and Govindarajan, Sudha and Gadkari, Rupali and Srinivasan, N and Jayandharan, Giridhara R (2015) Successful Gene Transfer in Passively Immunized Mice With Immunologically-Inert AAVrh.10 Vectors. In: MOLECULAR THERAPY, 23 (1). S179.

Selvaraj, J and Rajendran, V and Ramalingam, B (2021) Nanovaccine: A Modern Approach to Vaccinology. [Book Chapter]

Selvaraj, M and Ahmad, Rais and Varshney, Umesh and Vijayan, M (2012) Crowding, molecular volume and plasticity: An assessment involving crystallography, NMR and simulations. In: JOURNAL OF BIOSCIENCES, 37 (6). pp. 953-963.

Selvaraj, M and Ahmad, Rais and Varshney, Umesh and Vijayan, M (2012) Structures of new crystal forms of Mycobacterium tuberculosis peptidyl-tRNA hydrolase and functionally important plasticity of the molecule. In: Acta Crystallographica Section F, 68 (Part 2). pp. 124-128.

Selvaraj, M and Govindan, A and Seshadri, A and Dubey, B and Varshney, U and Vijayan, M (2013) Molecular flexibility of Mycobacterium tuberculosis ribosome recycling factor and its functional consequences: An exploration involving mutants. In: JOURNAL OF BIOSCIENCES, 38 (5). pp. 845-855.

Selvaraj, M and Roy, S and Sangeetha, R and Varshney, Umesh and Vijayan, M (2007) Structural plasticity and enzyme action: Crystal structures of Mycobacterium tuberculosis peptidyl-tRNA hydrolase. In: Journal of Molecular Biology, 372 (1). pp. 186-193.

Selvaraj, M and Roy, S and Singh, NS and Sangeetha, R and Varshney, U and Vijayan, M (2007) Structural plasticity and enzyme action: Crystal structures of Mycobacterium tuberculosis peptidyl-tRNA hydrolase. In: Journal of Molecular Biology, 372 (1). pp. 186-193.

Selvaraj, M and Singh, NS and Roy, Siddhartha and Sangeetha, R and Varshney, Umesh and Vijayan, M (2006) Cloning, expression, purification, crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Mycobacterium tuberculosis. In: Acta Crystallographica Section F, 62 (9). pp. 913-915.

Selvaraj, M and Thamotharan, S and Roy, Siddhartha and Vijayan, M (2007) X-ray studies of crystalline complexes involving amino acids and peptides. XLIV. Invariant features of supramolecular association and chiral effects in the complexes of arginine and lysine with tartaric acid. In: Acta Crystallographica Section B: Structural Science, 63 (3). pp. 459-468.

Selvi, Ruthrotha B and Swaminathan, Amrutha and Chatterjee, Snehajyoti and Shanmugam, Muthu K and Li, Feng and Ramakrishnan, Gowsica B and Siveen, Kodappully Sivaraman and Chinnathambi, Arunachalam and Zayed, M. Emam and Alharbi, Sulaiman Ali and Basha, Jeelan and Bhat, Akshay and Vasudevan, Madavan and Dharmarajan, Arunasalam and Sethi, Gautam and Kundu, Tapas K (2016) Inhibition of p300 lysine acetyltransferase activity by luteolin reduces tumor growth in head and neck squamous cell carcinoma (HNSCC) xenograft mouse model. In: ONCOTARGET, 6 (41). pp. 43806-43818.

Sen, Dwaipayan and Gadkari, Rupali A and Sudha, Govindarajan and Gabriel, Nishanth and Kumar, Yesupatham Sathish and Selot, Ruchita and Samuel, Rekha and Rajalingam, Sumathi and Ramya, V and Nair, Sukesh C and Srinivasan, Narayanaswamy and Srivastava, Alok and Jayandharan, Giridhara R (2013) Targeted Modifications in Adeno-Associated Virus Serotype 8 Capsid Improves Its Hepatic Gene Transfer Efficiency In Vivo. In: HUMAN GENE THERAPY METHODS, 24 (2). 104-U64.

Sen, Dwaipayan and Gadkari, Rupali A and Sudha, Govindarajan and Gabriel, Nishanth and Ramya, V and Nair, Sukesh C and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara R (2013) A novel adeno-associated virus serotype (AAV)-8 capsid mutant improves human coagulation factor IX expression in vivo. In: Molecular Therapy, 21 (1). S47-S47.

Sen, Dwaipayan and Kalaivani, V and Gadkari, Rupali and Sudha, G and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara R (2013) Multiple molecular alterations in phosphodegrons 1-3 within AAV2 capsid demonstrates higher hepatic gene transfer efficiency. In: Molecular Therapy, 21 (1). S206-S207.

Sen, P and Srinivasan, A and Hegde, MS and Rao, CNR (1983) X-ray photoelectron spectroscopic studies of surface oxidation of metallic glasses. In: Journal of Materials Science, 18 (1). pp. 173-178.

Sengupta, A and Mahalakshmi, R and Shamala, N and Balaram, P (2005) Aromatic interactions in tryptophan-containing peptides: crystal structures of model tryptophan peptides and phenylalanine analogs. In: The Journal of Peptide Research, 65 (1). pp. 113-129.

Sengupta, Anindita and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Raja, Muruga Poopathi K and Balaram, Padmanabhan (2006) Structural studies of model peptides \beta-, \gamma- containing and \delta- amino acids. In: Organic and Biomolecular Chemistry, 4 (22). pp. 4214-4222.

Sengupta, Anindita and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Raja, Muruga Poopathi K and Balaram, Padmanabhan (2006) Structural studies of model peptides containing beta-, gamma- and delta-amino acids. In: Organic & Biomolecular Chemistry, 4 (22). pp. 4214-4222.

Sengupta, N and Mondal, AK and Mishra, S and Chattopadhyay, K and Dutta, S (2021) Single-particle cryo-em reveals conformational variability of the oligomeric vcc Î²-barrel pore in a lipid bilayer. In: Journal of Cell Biology, 220 (12).

Sengupta, N and Padmanaban, S and Dutta, S (2023) Cryo-EM reveals the membrane-binding phenomenon of EspB, a virulence factor of the mycobacterial type VII secretion system. In: Journal of Biological Chemistry, 299 (4).

Sengupta, Suparna and Puri, Kamal Deep and Surolia, Avadhesha and Roy, Siddhartha and Bhattacharya, Bhabatarak (1993) N-(7-Nitrobenz-2-oxa-1,3-diazol-4-yI)colcemid, a probe for different classes of colchincine-binding site on tubulin. In: European Journal of Biochemistry, 212 (2). pp. 387-393.

Seshadri, K and Balaji, PV and Rao, VS and Vishveshwara, S (1993) Computer modelling studies of ribonuclease A-pyrimidine nucleotide complexes. In: Journal of Biomolecular Structure & Dynamics, 11 (2). pp. 395-415.

Seshadri, K and Rao, VS and Vishveshwara, S (1992) Molecular dynamics studies on nucleoside 2',3'-cyclic phosphates. In: Journal of Biomolecular Structure & Dynamics, 9 (6). pp. 1253-1268.

Seshadri, K and Rao, VS and Vishveshwaraa, S (1995) Interaction of substrate uridyl 3',5'-adenosine with ribonuclease A:a molecular dynamics study. In: Biophysical Journal, 69 (6). pp. 2185-2194.

Seshadri, K and Vishveshwara, S and Jain, MK (1994) Binding of active site directed ligands to phospholipase A2: Implications on the molecular constraints and catalytic mechanism. In: Proceedings of the indian academy of sciences - chemical sciences, 106 (5). pp. 1177-1189.

Seshadri , K and Rao , VS and Vishveshwara , S (1994) Characterization of substrate UpA binding to RNase A--computer modelling and energetics approach. In: Journal of biomolecular structure & dynamics, 12 (3). 581 -603 .

Seth, Subbendu and Balaram, P and Mathew, MK (1997) Helix-sheet interconversion in a synthetic pore lining peptide derived from a designed ion channel. In: Current Science, 72 (7). pp. 509-512.

Seth, S and Balaram, P and Mathew, MK (1997) Characterization of a 22-residue peptide derived from a designed ion channel. In: Biochimica Et Biophysica Acta-Biomembranes, 1328 (2). pp. 177-184.

Shafi, KM and Sowdhamini, R (2022) Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members. In: BMC Genomics, 23 (1).

Shafique, M and Sarma, SP (2022) Potential anticancer peptides design from the cysteine rich plant defensins: An in silico approach. In: Indian Journal of Biochemistry and Biophysics, 59 (9). pp. 900-908.

Shahul Hameed, MS (2012) The Structure of the Thioredoxin−Triosephosphate Isomerase Complex Provides Insights into the Reversible Glutathione-Mediate Regulation of Triosephosphate Isomerase. In: Biochemistry, 51 (1). pp. 533-544.

Shakkottai, VG and Sudha, R and Balaram, P (2002) Gramicidin S: a peptide model for protein glycation and reversal of glycation using nucleophilic amines. In: Journal-of-Peptide-Research, 60 (2). pp. 112-120.

Shamala, N and Nagaraj, R and Balaram, P (1977) The crystal and molecular structure of the amino terminal tetra-peptide of alamethicin. A novel 310 helical conformation. In: Biochemical and Biophysical Research Communications, 79 (1). pp. 292-298.

Shamala, N and Nagaraj, R and Balaram, P (1977) The crystal and molecular structure of the amino terminal tetrapeptide of alamethicin. A novel 310 helical conformation. In: Biochemical and Biophysical Research Communications, 79 (1). pp. 292-298.

Shamala, Narayanaswamy and Nagaraj, Ramakrishnan and Balaram, P (1978) The 310 helical conformation of a pentapeptide containing a-aminoisobutyric acid (Aib): X-ray crystal structure of Tos-(Aib)5 OMe. In: Journal of the Chemical Society, Chemical Communications (22). 996 -997.

Shambat, Srikanth Mairpady and Siemens, Nikolai and Monk, Ian R and Mohan, Disha B and Mukundan, Santhosh and Krishnan, Karthickeyan Chella and Prabhakara, Sushma and Snall, Johanna and Kearns, Angela and Vandenesch, Francois and Svensson, Mattias and Kotb, Malak and Gopal, Balasubramanian and Arakere, Gayathri and Norrby-Teglund, Anna (2016) A point mutation in AgrC determines cytotoxic or colonizing properties associated with phenotypic variants of ST22 MRSA strains. In: NATURE PUBLISHING GROUP, MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND .

Shameer, Khader and Madan, Lalima L and Veeranna, Shivamurthy and Gopal, Balasubramanian and Sowdhamini, Ramanathan (2010) PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes. In: BMC Bioinformatics, 11 .

Shankaramma, SC and Singh, Kumar S and Sathyamurthy, Aruna and Balaram, P (1999) Insertion of Methylene Units into the Turn Segment of Designed beta-Hairpin Peptides. In: Journal of the American Chemical Society, 121 (23). pp. 5360-5363.

Shanmugam, Haripriya and Ganguly, Subhasish and Priya, Badma (2022) Plant food bioactives and its effects on gut microbiota profile modulation for better brain health and functioning in Autism Spectrum Disorder individuals: A review. In: Food Frontiers, 3 (1). pp. 124-141. ISSN 2643-8429

Shanujah, M and Deepagoda, TKK and Smits, KM and Shreedharan, V and Paramrswaran, TG and Babu, GLS (2021) Gas diffusivity-based characterization of aggregated soils linking to methane migration in shallow subsurface. In: Vadose Zone Journal .

Sharma, Umender K and Chatterji, Dipankar (2010) Transcriptional switching in Escherichia coli during stress and starvation by modulation of Sigma 70 activity. In: FEMS Microbiology Reviews, 34 (5). pp. 646-657.

Sharma, Vivek and Vijayan, Mamannamana and Surolia, Avadhesha (1999) Process for preparing recombinant peanut agglutinin mutants for improved diagnosis of T-Antigen expression. Patent Number(s) IN 0182773 A. Patent Assignee(s) Indian Institute of Science.

Sharma, A and Chandrashekar, CR and Krishna, S and Sowdhamini, R (2024) Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2. In: Journal of Molecular Biology, 436 (19).

Sharma, A and Chattopadhyay, G and Chopra, P and Bhasin, M and Thakur, C and Agarwal, S and Ahmed, S and Chandra, N and Varadarajan, R and Singh, R (2020) VapC21 Toxin Contributes to Drug-Tolerance and Interacts With Non-cognate VapB32 Antitoxin in Mycobacterium tuberculosis. In: Frontiers in Microbiology, 11 .

Sharma, A and Singh, N and Bhasin, M and Tiwari, P and Chopra, P and Varadarajan, R and Singh, R (2024) Deciphering the role of VapBC13 and VapBC26 toxin antitoxin systems in the pathophysiology of Mycobacterium tuberculosis. In: Communications Biology, 7 (1).

Sharma, AK and Sharma, SK and Surolia, A and Surolia, N and Sarma, SP (2006) Solution structures of conformationally equilibrium forms of holo-acyl carrier protein (PfACP) from Plasmodium falciparum provides insight into the mechanism of activation of ACPs. In: Biochemistry, 45 (22). pp. 6904-6916.

Sharma, Akshara and Seal, Aniruddha and Iyer, Sahithya S and Srivastava, Anand (2022) Enthalpic and entropic contributions to interleaflet coupling drive domain registration and antiregistration in biological membrane. In: Physical Review E, 105 (4). ISSN 2470-0045

Sharma, Alok and Pohlentz, Gottfried and Bobbili, Kishore Babu and Jeyaprakash, Arockia A and Chandran, Thyageshwar and Mormann, Michael and Swamy, Musti J and Vijayan, M (2013) The sequence and structure of snake gourd (Trichosanthes anguina) seed lectin, a three-chain nontoxic homologue of type II RIPs. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 69 (8). pp. 1493-1503.

Sharma, Alok and Sekar, K and Vijayan, M (2009) Structure, dynamics, and interactions of jacalin. Insights from molecular dynamics simulations examined in conjunction with results of X-ray studies. In: Proteins: Structure, Function, and Bioinformatics, 77 (4). pp. 760-777.

Sharma, Alok and Thamotharan, S and Roy, Siddhartha and Vijayan, M (2006) X-ray studies of crystalline complexes involving amino acids and peptides. XLIII. Adipic acid complexes of L- and DL-lysine. In: Acta Crystallographica Section C, 62 (3). o148-o152.

Sharma, Alok and Vijayan, Mamannamana (2011) Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: An X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes. In: Glycobiology, 21 (1). pp. 23-33.

Sharma, Alok and Vijayan, Mamannamana (2011) Quaternary association in beta-prism I fold plant lectins: Insights from X-ray crystallography, modelling and molecular dynamics. In: Journal of Biosciences, 36 (5). pp. 793-808.

Sharma, Alok Kumar and Sharma, Shailendra Kumar and Surolia, Namita and Sarma, Siddhartha P (2005) NMR Assignment of the Holo-ACP from Malaria Parasite Plasmodium falciparum. In: Journal of Biomolecular NMR, 32 (3). p. 260.

Sharma, Ankur and Gadkari, Rupali A and Ramakanth, Satthenapalli V and Padmanabhan, Krishnanand and Madhumathi, Davanam S and Devi, Lakshmi and Appaji, Lingappa and Aster, Jon C and Rangarajan, Annapoorni and Dighe, Rajan R (2015) A novel Monoclonal Antibody against Notch1 Targets Leukemia-associated Mutant Notch1 and Depletes Therapy Resistant Cancer Stem Cells in Solid Tumors. In: SCIENTIFIC REPORTS, 5 .

Sharma, Deepak and Balamurali, MM and Chakraborty, Kausik and Kumaran, Sowmini and Jeganathan, Sadasivam and Rashid, Umar and Ingallinella, Paolo and Varadarajan, Raghavan (2005) Protein Minimization of the gp120 Binding Region of Human CD4 \dagger. In: Biochemistry, 44 (49). pp. 16192-16202.

Sharma, Indra Mani and Dhanaraman, Thillaivillalan and Mathew, Ritta and Chatterji, Dipankar (2012) Synthesis and Characterization of a Fluorescent Analogue of Cyclic di-GMP. In: BIOCHEMISTRY, 51 (27). pp. 5443-5453.

Sharma, Indra Mani and Petchiappan, Anushya and Chatterji, Dipankar (2014) Quorum Sensing and Biofilm Formation in Mycobacteria: Role of c-di-GMP and Methods to Study This Second Messenger. In: IUBMB LIFE, 66 (12). pp. 823-834.

Sharma, Indra Mani and Prakash, Sunita and Dhanaraman, Thillaivillalan and Chatterji, Dipankar (2014) Characterization of a dual-active enzyme, DcpA, involved in cyclic diguanosine monophosphate turnover in Mycobacterium smegmatis. In: MICROBIOLOGY-SGM, 160 (10). pp. 2304-2318.

Sharma, M and Desiraju, S and Chaurey, D and Mehta, BK (2002) GC-MS study of Artabotrys odoratissimus fatty oil (leaves). In: Grasas y Aceites, 53 (2). pp. 187-189.

Sharma, P and Vijaykumar, A and Raghavan, JV and Rananaware, SR and Alakesh, A and Bodele, J and Rehman, JU and Shukla, S and Wagde, V and Nadig, S and Chakrabarti, S and Visweswariah, SS and Nandi, D and Gopal, B and Jhunjhunwala, S (2022) Particle uptake driven phagocytosis in macrophages and neutrophils enhances bacterial clearance. In: Journal of Controlled Release, 343 . pp. 131-141.

Sharma, SK (2004) Characterization and inhibition of Plasmodium falciparum beta-hydroxyacyl-ACP dehydratase (PfFabZ): A potential antimalarial target. In: 18th Symposium of the Protein-Society, AUG 14-18, 2004, San Diego, CA.

Sharma, Shailendra Kumar and Kapoor, Mili and Ramya, TNC and Kumar, Sanjay and Kumar, Gyanendra and Modak, Rahul and Sharma, Shilpi and Surolia, Namita and Surolia, Avadhesha (2003) Identification, Characterization, and Inhibition of Plasmodium falciparum \beta -Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ). In: The Journal Of Biological Chemistry, 278 (46). pp. 45661-45671.

Sharma, Shailendra Kumar and Kumar, Gyanendra and Kapoor, Mili and Surolia, Avadhesha (2008) Combined effect of epigallocatechin gallate and triclosan on enoyl-ACP reductase of Mycobacterium tuberculosis. In: Biochemical and Biophysical Research Communications, 368 (1). pp. 12-17.

Sharma, Shailendra Kumar and Modak, Rahul and Sharma, Shilpi and Sharma, Alok Kumar and Sarma, Siddhartha P and Surolia, Avadhesha and Surolia, Namita (2005) A novel approach for over-expression, characterization, and isotopic enrichment of a homogeneous species of acyl carrier protein from Plasmodium falciparum. In: Biochemical and Biophysical Research Communications, 330 (4). pp. 1019-1026.

Sharma, Shailendra Kumar and Parasuraman, Prasanna and Kumar, Gyanendra and Surolia, Namita and Surolia, Avadhesha (2007) Green Tea Catechins Potentiate Triclosan Binding to Enoyl-ACP Reductase from Plasmodium falciparum (PfENR). In: Journal of Medicinal Chemistry, 50 (4). pp. 765-775.

Sharma, Shalini and Bharadwaj, Satish and Surolia, Avadhesha and Podder, Sunil Kumar (1998) Evaluation of the stoichiometry and energetics of carbohydrate binding to Ricinus communis agglutinin: a calorimetric study. In: Biochemical Journal, 333 (3). pp. 539-542.

Sharma, Shilpi and Ramya, TNC and Surolia, Avadhesha and Surolia, Namita (2003) Triclosan as a Systemic Antibacterial Agent in a Mouse Model of Acute Bacterial Challenge. In: Antimicrobial Agents and Chemotherapy, 47 (12). pp. 3859-3866.

Sharma, Shilpi and Sharma, Shailendra Kumar and Modak, Rahul and Karmodiya, Krishanpal and Surolia, Namita and Surolia, Avadhesha (2007) Mass Spectrometry-Based Systems Approach for Identification of Inhibitors of Plasmodium falciparum Fatty Acid Synthase{triangledown}. In: Antimicrobial Agents and Chemotherapy, 51 (7). pp. 2552-2558.

Sharma, Shilpi and Sharma, Shailendra Kumar and Surolia, Namita and Surolia, Avadhesha (2009) Beta-Ketoacyl-ACP Synthase I/II from Plasmodium falciparum (PfFabB/F)-Is it B or F? In: IUBMB LIFE, 61 (6). pp. 658-662.

Sharma, Umender K and Chatterji, Dipankar (2006) Both regions 4.1 and 4.2 of E. coli ${\sigma}{^7{^0}}$ are together required for binding to bacteriophage T4 AsiA in vivo. In: Gene, 376 (1). pp. 133-143.

Sharma, Umender K and Chatterji, Dipankar (2008) Differential Mechanisms of Binding of Anti-Sigma Factors Escherichia coli Rsd and Bacteriophage T4 AsiA to E. coli RNA Polymerase Lead to Diverse Physiological Consequences. In: Journal of Bacteriology, 190 (10). pp. 3434-3443.

Sharma, VK and Nandeesha, H and Vinod, KV and Subramanian, SK and Sankar, DS and Rajendran, R (2019) Comparison of anthropometric, cardiovascular, autonomic, baroreflex sensitivity, aerobic fitness, inflammatory markers and oxidative stress parameters between first degree relatives of diabetes and controls. In: Diabetes and Metabolic Syndrome: Clinical Research and Reviews, 13 (1). pp. 652-658.

Sharma, Vijay Kumar and Chandrashekaran, Maroli K (1999) Precision of a Mammalian Circadian Clock. In: Naturwissenschaften, 86 (7). pp. 333-335.

Sharma, Vivek and Srinivas, VR and Adhikari, Pratima and Vijayan, M and Surolia, Avadhesha (1998) Molecular basis of recognition by Gal/GalNAc specific legume lectins: influence of Glu 129 on the specificity of peanut agglutinin (PNA) towards C2-substituents of galactose. In: Glycobiology, 8 (10). pp. 1007-1012.

Sharma, Vivek and Srinivas, VR and Surolia, Avadhesha (1996) Cloning and sequencing of winged bean (Psophocarpus tetragonolobus) basic agglutinin (WBA I): presence of second glycosylation site and its implications in quaternary structure. In: FEBS Letters, 389 (3). pp. 289-292.

Sharma, Vivek and Surolia, Avadhesha (1997) Analyses of carbohydrate recognition by legume lectins: Size of the combining site loops and their primary specificity. In: Journal of Molecular Biology, 267 (2). pp. 433-445.

Sharma, Vivek and Surolia, Avadhesha (1994) Cloning by genomic PCR and production of peanut agglutinin in Escherichia coli. In: Gene, 148 (2). pp. 299-304.

Sharma, Vivek and Vijayan, M and Surolia, Avadhesha (1996) Imparting Exquisite Specificity to Peanut Agglutinin for the Tumor-associated Thomsen-Friedenreich Antigen by Redesign of Its Combining Site. In: The Journal of Biological Chemistry, 271 (35). pp. 21209-21213.

Shastri, BP and Easwaran, KRK (1984) Conformations of lasalocid A-lithium complexes in acetonitrile. In: International Journal of Biological Macromolecules, 6 (4). pp. 219-223.

Shastri, Bhamidipati P and Sankaram, Mantripragada B and Easwaran, Kalpathy RK (1987) Carboxylic ionophore (lasalocid A and A23187)-mediated lanthanide ion transport across phospholipid vesicles. In: Biochemistry, 26 (16). pp. 4925-4930.

Shastri, Bhamidipati P and Sankaram, Mantripragada B and Easwaran, Kalpathy RK (1987) Influence of solvent and of cation size on the conformations of lasalocid A-lanthanide(III) ion complexes: circular dichroism and fluorescence studies. In: Biochemistry, 26 (26). pp. 4930-4936.

She, Manjunath S and Madaiah, M and Khan, MI (1988) Binding of N-dansylgalactosamine to winged-bean tuber lectin: studies by fluorescence quenching titrations. In: Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 954 . pp. 44-49.

Shekar, SC and Sankaram, MB and Easwaran, KRK (1984) Pyrrolidine ring conformations in prolyl peptides from 13C spin-lattice relaxation times. In: International Journal of Peptide and Protein Research, 23 (2). 166 -173.

Shekar, SC and Easwaran, KRK (1982) Proline Ring Conformations Corresponding to a Bistable Jump Model from $^{13}C$ spin-Lattice Relaxation Times. In: Biopolymers, 21 (8). pp. 1479-1487.

Shekar, SC and Easwaran, KRK (1982) Proline ring conformations corresponding to a bistable jump model from 13C spin-lattice relaxation times. In: Biopolymers, 21 (8). pp. 1479-1487.

Shelar, Ashish and Bansal, Manju (2016) Helix perturbations in membrane proteins assist in inter-helical interactions and optimal helix positioning in the bilayer. In: BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 1858 (11). pp. 2804-2817.

Shelar, Ashish and Bansal, Manju (2014) Sequence and conformational preferences at termini of alpha-helices in membrane proteins: Role of the helix environment. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 82 (12). pp. 3420-3436.

Shelar, Ashish and Kumar, Prasun and Bansal, Manju (2014) DEFINING alpha-HELIX GEOMETRY BY C-alpha ATOM TRACE vs (phi-psi) TORSION ANGLES: A COMPARATIVE ANALYSIS. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 116-127.

Shembekar, Nachiket and Mallajosyula, Vamsee Aditya V and Mishra, Arpita and Yeolekar, Leena and Dhere, Rajeev and Kapre, Subhash and Varadarajan, Raghavan and Gupta, Satish Kumar (2013) Isolation of a High Affinity Neutralizing Monoclonal Antibody against 2009 Pandemic H1N1 Virus That Binds at the `Sa' Antigenic Site. In: PLOS ONE, 8 (1).

Shembekar, Nachiket and Mallajosyula, Vamsee Aditya V and Chaudhary, Piyush and Upadhyay, Vaibhav and Varadarajan, Raghavan and Gupta, Satish Kumar (2014) Humanized antibody neutralizing 2009 pandemic H1N1 virus. In: BIOTECHNOLOGY JOURNAL, 9 (12). pp. 1594-1603.

Shenoy, Avinash R and Sivakumar, K and Krupa, A and Srinivasan, N and Visweswariah, Sandhya S (2004) A survey of nucleotide cyclases in Actinobacteria: unique domain organization and expansion of the class III cyclase family in Mycobacterium tuberculosis. In: Comparative and Functional Genomics, 5 (1). pp. 17-38.

Shenoy, Avinash R and Srinivasan, N and Subramaniam, M and Visweswariah, Sandhya S (2003) Mutational analysis of the Mycobacterium tuberculosis Rv1625c adenylyl cyclase: residues that confer nucleotide specificity contribute to dimerization. In: FEBS Letters, 545 (2-3). pp. 253-259.

Shenoy, Avinash R and Srinivasan, N and Visweswariah, Sandhya S (2002) The ascent of nucleotide cyclases: conservation and evolution of a theme. In: Journal of Biosciences, 27 (2). pp. 85-91.

Sheshadri, S and Lingaraju, GM and Varadarajan, R (1999) Denaturant mediated unfolding of both native and molten globule states of maltose binding protein are accompanied by large $\Delta Cp^'s$. In: Protein Science, 8 (8). pp. 1689-1695.

Sheshadri, S and Lingaraju, GM and Varadarajan, R (1999) Denaturant mediated unfolding of both native and molten globule states of maltose binding protein are accompanied by large [Delta]Cp's. In: Protein Science, 8 (8). pp. 1689-1695.

Shetty, Kartika N and Bhat, Ganapati G and Inamdar, Shashikala R and Swamy, Bale M and Suguna, K (2012) Crystal structure of a beta-prism II lectin from Remusatia vivipara. In: Glycobiology, 22 (1). pp. 56-69.

Shetty, Kartika N and Latha, Vakada Lavanya and Rao, Rameshwaram Nagender and Nadimpalli, Siva Kumar and Suguna, Kaza (2013) Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. In: IUBMB Life, 65 (7). pp. 633-644.

Shivaji, S and Vijayasarathy, S and Balaram, P (1981) Studies on sperm plasma and acrosomal membranes. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 96.

Shobana, S and Nadig, G and Vishveshwara, S (1994) Effect of the valine-threonine constraint on the dynamics of the proline helix — A molecular dynamics study. In: Proceedings of the indian academy of sciences -chemical sciences, 106 (2). pp. 579-589.

Shobana, S and Vishveshwara, S (1991) Structure of valinomycin by molecular dynamics studies. In: Indian Journal of Biochemistry & Biophysics, 28 (5-6). 363-368 .

Shobana, S and Vishveshwara, Saraswathi (1996) Conformational study of valinomycin: a molecular dynamics approach. In: Biophysical Chemistry, 57 (2-3). pp. 163-175.

Shouche, YS and Latha, PK and Ramesh, Narayan and Majumder, K and Mandyan, V and Bramhachari, SK (1985) Left-Handed DNA in Synthetic and Topologically Constrained Form V-DNA. In: Journal of Biosciences, 8 (3-4). pp. 563-578.

Shouche, Yogesh S and Ramesh, N and Brahachari, Samir K (1990) Probing of unusual DNA structures in topologically constrained form V DNA: use of restriction enzymes as structural probe. In: Nucleic Acids Research, 18 (2). pp. 267-275.

Shridhar, S and Mishra, P and Narayanan, R (2022) Dominant role of adult neurogenesis-induced structural heterogeneities in driving plasticity heterogeneity in dentate gyrus granule cells. In: Hippocampus .

Shrivastava, I and Vishveshwara, S and Cieplak, Marek and Maritan, A and Banavar, JR (1995) Lattice model for rapidly folding protein-like heteropolymers. In: PNAS, 92 (20). pp. 9206-9209.

Shrivastava, Priyanka and Navratna, Vikas and Silla, Yumnam and Dewangan, Rikeshwer P and Pramanik, Atreyi and Chaudhary, Sarika and Rayasam, GeethaVani and Kumar, Anuradha and Gopal, Balasubramanian and Ramachandran, Srinivasan (2016) Inhibition of Mycobacterium tuberculosis dihydrodipicolinate synthase by alpha-ketopimelic acid and its other structural analogues. In: SCIENTIFIC REPORTS, 6 .

Shukla, Jinal and Gupta, Radhika and Thakur, Krishan Gopal and Gokhale, Rajesh and Gopal, B (2014) Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA sigma-anti-sigma complex. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 70 (4). pp. 1026-1036.

Shukla, PK and Jena, NR and Mishra, PC (2011) Quantum theoretical study of molecular mechanisms of mutation and cancer - A review. In: Proceedings of the National Academy of Sciences, India - Section A, 81A (Part 2). pp. 79-98.

Sidhanta, SPD and Sowdhamini, R and Srinivasan, N (2023) Comparative analysis of permanent and transient domain–domain interactions in multi-domain proteins. In: Proteins: Structure, Function and Bioinformatics .

Sikdar, SK (1991) Light on vision and movement An obituary of R.A.Granit. In: Current Science (Bangalore), 60 (11). pp. 663-664.

Sikdar, SK (1996) Membrane ion channels: Visualizing the invisible. In: Current Science (Bangalore), 70 (6). 422-423 .

Sikdar, SK (1997) The different locked states of an allosteric membrane channel protein unlocked. In: Current science, 73 (10). pp. 811-814.

Sikdar, SK and Kreft, M and Pangrsic, T and Gril, S and Zorec, R (2005) FM1-43 measurements of local exocytotic events in rat melanotrophs. In: FEBS Letters, 579 (29). pp. 6575-6580.

Sikdar, SK and Legendre, P and Dupouy, B and Vincent, JD (1991) Maturation of a transient outward potassium current in mouse fetal hypothalamic neurons in culture. In: Neuroscience, 43 (2-3). pp. 503-511.

Sikdar, Sujit K and Kreft, Marko and Zorec, Robert (1998) Modulation of the unitary exocytic event amplitude by cAMP in rat melanotrophs. In: The Journal of Physiology, 511 (03). pp. 851-859.

Sikdera, Kiran Bachhawat and Thomas, Celestine J and Surolia, Avadhesha (2001) Thermodynamic analysis of the binding of galactose and poly-N-acetyllactosamine derivatives to human galectin-3. In: FEBS Letters, 500 (1-2). pp. 75-79.

Simanshu, Dhirendra K and Chittori, Sagar and Savithri, HS and Murthy, MRN (2006) Crystallization and preliminary X-ray crystallographic analysis of biodegradative threonine deaminase (TdcB) from Salmonella typhimurium. In: Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 62 (3). pp. 275-278.

Simanshu, Dhirendra K and Chittori, Sagar and Savithri, HS and Murthy, MRN (2007) Structure and function of enzymes involved in the anaerobic degradation of L-threonine to propionate. In: Journal of Biosciences, 32 (2). pp. 1195-1206.

Simanshu, Dhirendra K and Murthy, MRN (2005) Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of propionate kinase (TdcD) from Salmonella typhimurium. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (Part 1). pp. 52-55.

Simanshu, Dhirendra K and Satheshkumar, PS and Savithri, HS and Murthy, MRN (2003) Crystal structure of Salmonella typhimurium 2-methylisocitrate lyase (PrpB) and its complex with pyruvate and $Mg^{2+}$. In: Biochemical and Biophysical Research Communications, 311 (1). pp. 193-201.

Simanshu, Dhirendra K and Savithri, HS and Murthy, MRN (2005) Crystal structures of ADP and AMPPNP-bound Propionate kinase (TdcD)from Salmonella typhimurium: Comparison with Members of Acetate and Sugar kinase/Heat Shock Cognate 70/Actin Superfamily. In: Journal of Molecular Biology, 352 (4). pp. 876-892.

Simanshu, Dhirendra K and Savithri, HS and Murthy, MRN (2008) Crystal structures of Salmonella typhimurium propionate kinase and its complex with $A{p_4}A$: Evidence for a novel $A{p_4}A$ synthetic activity. In: Proteins: Structure, Function, and Bioinformatics, 70 (4). pp. 1379-1388.

Simanshu, Dhirendra K and Savithri, Handanahal S and Murthy, Mathur RN (2006) Crystal Structures of Salmonella typhimurium Biodegradative Threonine Deaminase and Its Complex with CMP Provide Structural Insights into Ligand-induced Oligomerization and Enzyme Activation. In: Journal of Biological Chemistry, 281 (51). pp. 39630-39641.

Simanshu , DK and Satheshkumar , PS and Parthasarathy , S and Savithri , HS and Murthy , MR (2002) Cloning, expression, purification and preliminary X-ray crystallographic studies of 2-methylisocitrate lyase from Salmonella typhimurium. Acta Crystallogr. In: Acta Crystallographica Section D Biological Crystallography, 58 (12). pp. 2159-2161.

Simanshu , DK and Savithri , HS and Murthy , MR (2008) Crystal structures of Salmonella typhimurium propionate kinase and its complex with Ap4A: evidence for a novel Ap4A synthetic activity. In: Proteins: Structure, Function, and Bioinformatics, 70 (4). pp. 1379-1388.

Singh, A and Badepally, NG and Surolia, A (2021) Role of a cysteine residue in substrate entry and catalysis in MtHIBADH: Analysis by chemical modifications and site-directed mutagenesis. In: IUBMB Life .

Singh, A and Varshney, U and Vijayan, M (2017) Characterization of a second Single Stranded DNA Binding protein from Mycobacterium smegmatis. In: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 46 (1). S147.

Singh, Amandeep (2017) Guardians of the mycobacterial genome: A review on DNA repair systems in Mycobacterium tuberculosis. In: Microbiology, 163 (12). pp. 1740-1758. ISSN 1350-0872

Singh, Amandeep and Arif, Sheikh Mohammad and San, Pau Biak and Varshney, Umesh and Vijayan, M (2018) Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2. In: JOURNAL OF STRUCTURAL BIOLOGY, 204 (3). pp. 449-456.

Singh, Amandeep and Bhagavat, Raghu and Vijayan, M and Chandra, Nagasuma (2016) A comparative analysis of the DNA recombination repair pathway in mycobacterial genomes. In: TUBERCULOSIS, 99 . pp. 109-119.

Singh, Amandeep and Varshney, Umesh and Vijayan, M (2016) Structure of the second Single Stranded DNA Binding protein (SSBb) from Mycobacterium smegmatis. In: JOURNAL OF STRUCTURAL BIOLOGY, 196 (3). pp. 448-454.

Singh, Amandeep and Vijayan, M and Nagaraju, Ganesh (2018) RecG(wed): A probable novel regulator in the resolution of branched DNA structures in mycobacteria. In: IUBMB LIFE, 70 (8). pp. 786-794.

Singh, Amandeep and Vijayan, M and Varshney, Umesh (2018) Distinct properties of a hypoxia specific paralog of single stranded DNA binding (SSB) protein in mycobacteria. In: TUBERCULOSIS, 108 . pp. 16-25.

Singh, Amit and Surolia, Avadhesha (2018) Tuberculosis: Today's researchestomorrow's therapies. In: IUBMB LIFE, 70 (9, SI). pp. 814-817.

Singh, DD and Saikrishnan, K and Kumar, Prashant and Dauter, Z and Sekar, K and Surolia, A and Vijayan, M (2004) Purification, crystallization and preliminary X-ray structure analysis of the banana lectin from Musa paradisiaca. In: Acta Crystallographica Section D: Biological Crystallography, 60 (11). pp. 2104-2106.

Singh, DD and Saikrishnan, K and Kumar, Prashant and Surolia, A and Sekar, K and Vijayan, M (2005) Unusual sugar specificity of banana lectin from Musa paradisiaca andits probable evolutionary origin. Crystallographic and modelling studies. In: Glycobiology, 15 (10). pp. 1025-1032.

Singh, Haobijam Johnson and Saumitra, * and Singh, Vijay R and Sikdar, Sujit K and Jayaprakash, Balaji and Ghosh, Ambarish (2016) Circular Differential Two-Photon Luminescence from Helically Arranged Plasmonic Nanoparticles. In: ACS PHOTONICS, 3 (5). pp. 863-868.

Singh, KK and Athira, PJ and Bhardwaj, N and Singh, DP and Watson, U and Saini, DK (2021) Acetylation of Response Regulator Protein MtrA in M. tuberculosis Regulates Its Repressor Activity. In: Frontiers in Microbiology, 11 .

Singh, Kumar S (2000) The human genome:A first look at the blueprint of human inheritance. In: Current Science, 79 (2). pp. 144-148.

Singh, Kumar S and Babu, Madan M and Balaram, P (2003) Registering alpha-Helices and beta-Strands Using Backbone C-H…O Interactions. In: Proteins: Structure, Function, and Genetics, 51 (2). pp. 167-171.

Singh, Kumar S and Maithal, Kapil and Balaram, Hemalatha and Balaram, P (2001) Synthetic peptides as inactivators of multimeric enzymes: inhibition of Plasmodium falciparum triosephosphate isomerase by interface peptides. In: FEBS Letters, 501 (1). pp. 19-23.

Singh, Parminder and Jindal, Bhavya and Surolia, Avadhesha and Panda, Dulal (2012) A Rhodanine Derivative CCR-11 Inhibits Bacterial Proliferation by Inhibiting the Assembly and GTPase Activity of FtsZ. In: BIOCHEMISTRY, 51 (27). pp. 5434-5442.

Singh, Pranveer and Sharma, Likhesh and Kulothungan, Rajendra S and Adkar, Bharat V and Prajapati, Ravindra Singh and Ali, Shaik Syed P and Krishnan, Beena and Varadarajan, Raghavan (2013) Effect of signal peptide on stability and folding of escherichia coli thioredoxin. In: PLOS One, 8 (5). e63442_1-e63442_14.

Singh, Prem and Talawar, Ramappa K and Krishna, PDV and Varshney, Umesh and Vijayan, M (2006) Overexpression, purification, crystallization and preliminary X-ray analysis of uracil N-glycosylase from Mycobacterium tuberculosis in complex with a proteinaceous inhibitor. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 62 (12). pp. 1231-1234.

Singh, Rajnish Prakash and Runthala, Ashish and Khan, Shahid and Jha, Prabhat Nath (2017) Quantitative proteomics analysis reveals the tolerance of wheat to salt stress in response to Enterobacter cloacae SBP-8. In: PLOS ONE, 12 (9).

Singh, Sunanda R and Rekha, Nambudiry and Pillai, Beena and Singh, Vijender and Naorem, Aruna and Sampath, Vinaya and Srinivasan, N and Sadhale, Parag (2004) Domainal organization of the lower eukaryotic homologs of the yeast RNA polymerase II core subunit Rpb7 reflects functional conservation. In: Nucleic Acids Research, 32 (1). pp. 201-210.

Singh, TP and Vijayan, M (1976) Structural studies of analgesics and their interactions. III. The crystal and molecular structure of amidopyrine. In: Acta Crystallographica Section B: Structural Crystallography and Crystal Chemistry, 32 (8). pp. 2432-2437.

Singh, Tej Pal and Vijayan, Mamannamana (1977) Structural studies of analgesics and their interactions. Part 4. Crystal structures of phenylbutazone and a 2 : 1 complex between phenylbutazone and piperazine. In: Journal of The Chemical Society-Perkin Transactions 2, 2 (5). pp. 693-699.

Singha, B and Behera, D and Khan, MZ and Singh, NK and Sowpati, DT and Gopal, B and Nandicoori, VK (2023) The unique N-terminal region of Mycobacterium tuberculosis sigma factor A plays a dominant role in the essential function of this protein. In: Journal of Biological Chemistry, 299 (3).

Singha, Netai C and Surolia, Namita and Surolia, A (1996) On the relationship of thermodynamic parameters with the buried surface area in protein-ligand complex formation. In: Bioscience Reports, 16 (1). pp. 1-10.

Singla, M and Chaudhary, V and Ghosh, A (2022) Bacterial Multidrug Tolerance and Persisters: Understanding the Mechanisms, Clinical Implications, and Treatment Strategies. [Book Chapter]

Singla, M and Pal, AK and Chaudhary, V and Behra, PRK and Ghosh, A (2023) Sub-operon promoter arrangement of disA facilitates c-di-AMP homeostasis and selective stress responses in Mycobacterium smegmatis. In: Journal of Biosciences, 48 (3).

Sinha, M and Narayanan, R (2022) Active Dendrites and Local Field Potentials: Biophysical Mechanisms and Computational Explorations. In: Neuroscience, 489 . 111 -142.

Sinha, M and Narayanan, R (2020) Unitary sources say: It is inhibition! In: Journal of Physiology, 598 (18). pp. 3815-3816.

Sinha, Manisha and Narayanan, Rishikesh (2015) HCN channels enhance spike phase coherence and regulate the phase of spikes and LFPs in the theta-frequency range. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , APR 28 2015, E2207-E2216. (In Press)

Sinha, Sharmistha and Gupta, Garima and Vijayan, Mamannamana and Surolia, Avadhesha (2007) Subunit assembly of plant lectins. In: Current Opinion in Structural Biology, 17 (5). pp. 498-505.

Sinha, Sharmistha and Mitra, Nivedita and Kumar, Gyanendra and Bajaj, Kanika and Surolia, Avadhesha (2004) Unfolding Studies on Soybean Agglutinin and Concanavalin A Tetramers: A Comparative Account. In: Biophysics Journal, 88 . pp. 1300-1310.

Sinha, Sharmistha and Mitra, Nivedita and Kumar, Gyanendra and Bajaj, Kanika and Surolia, Avadhesha (2005) Unfolding studies on soybean agglutinin and concanavalin a tetramers: A comparative account. In: Biophysical Journal, 88 (2). pp. 1300-1310.

Sinha, Sharmistha and Surolia, Avadhesha (2007) Attributes of Glycosylation in the Establishment of the Unfolding Pathway of Soybean Agglutinin. In: Biophysical Journal, 92 (1). pp. 208-216.

Sinha, Sharmistha and Surolia, Avadhesha (2005) Oligomerization Endows Enormous Stability to Soybean Agglutinin: A Comparison of the Stability of Monomer and Tetramer of Soybean Agglutinin. In: Biophysical Journal, 88 . pp. 4243-4251.

Sistla, Ramesh K and Brinda, KV and Vishveshwara, Saraswathi (2005) Identification of Domains and Domain Interface Residues in Multidomain Proteins from Graph Spectral Method. In: Proteins-structure Function and Bioinformatics, 59 (3). pp. 616-626.

Siva Shanmugam, NR and Jino Blessy, J and Veluraja, K and Michael Gromiha, M (2021) Prediction of protein-carbohydrate complex binding affinity using structural features. In: Briefings in Bioinformatics, 22 (4).

Sivaji, N and Abhinav, KV and Vijayan, M (2017) Crystallization and biochemical characterization of an archaeal lectin from Methanococcus voltae A3. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 73 (5). pp. 300-304.

Sivaji, N and Harish, N and Singh, S and Singh, A and Vijayan, M and Surolia, A (2021) Mevo lectin specificity toward high-mannose structures with terminal αman(1,2)αMan residues and its implication to inhibition of the entry of Mycobacterium tuberculosis into macrophages. In: Glycobiology, 31 (8). pp. 1046-1059.

Sivaji, N and Suguna, K and Surolia, A and Vijayan, M (2021) Structural and related studies on Mevo lectin from Methanococcus voltae A3: The first thorough characterization of an archeal lectin and its interactions. In: Glycobiology, 31 (3). pp. 315-328.

Sivaji, Nukathoti and Suguna, Kaza and Surolia, Avadhesha and Vijayan, Mamannamana (2019) Structural biology of plant lectins and macromolecular crystallography in India. In: CURRENT SCIENCE, 116 (9). pp. 1490-1505.

Sivaramjani, TR and Brahmachari, SK (1997) Human genome studies and intellectual property rights: Whither national interests? In: Current Science, 72 (10). pp. 708-716.

Skariyachan, Sinosh and Mahajanakatti, Arpitha Badarinath and Grandhi, Nisha Jayaprakash and Prasanna, Akshatha and Sen, Ballari and Sharma, Narasimha and Vasist, Kiran S and Narayanappa, Rajeswari (2015) Environmental monitoring of bacterial contamination and antibiotic resistance patterns of the fecal coliforms isolated from Cauvery River, a major drinking water source in Karnataka, India. In: ENVIRONMENTAL MONITORING AND ASSESSMENT, 187 (5).

Soman, J and Vijayan, M and Radhakrishnan, R and Rao, T (1989) X-Ray Studies On Crystalline Complexes Involving Amino-Acids And Peptides .20. Crystal-Structures Of Dl-Arginine Acetate Monohydrate And Dl-Lysine Acetate And A Comparison With The Corresponding L-Amino-Acid Complexes. In: Journal of Biomolecular Structure & Dynamics, 7 (2). pp. 269-277.

Soman, Jayashree and Vijayan, M (1989) X-ray studies on crystalline complexes involving amino acids and peptides: Part XVIII. Crystal structure of a new form of L-arginine D-glutamate and a comparative study of amino acid crystal structures containing molecules of the same and mixed chirality. In: Journal of Biosciences, 14 (2). pp. 111-125.

Soman, J and Suresh, CG and Vijayan, M (1988) X-ray studies on crystalline complexes involving amino acids and peptides. XV. Crystal structures of L-lysine D-glutamate and L-lysine D-aspartate monohydrate and the effect of chirality on molecular aggregation. In: International Journal of Peptide & Protein Research, 32 (5). pp. 352-360.

Soman, Jayashree and Vijayan, M and Ramakrishnan, B and Row, Guru TN (1990) X-Ray studies on crystalline complexes involving amino acids and peptides. XVII. Chirality and molecular aggregation: The crystal structures of DL-arginine DL-glutamate monohydrate and DL-arginine DL-aspartate. In: Biopolymers, 29 (3). pp. 533-542.

Soman, KV and Ramakrishnan, C (1986) Identification and analysis of extended strands and beta-sheets in globular proteins. In: International Journal of Biological Macromolecules, 8 (2). pp. 89-96.

Soman, KV and Ramakrishnan, C (1983) Occurrence of a Single Helix of the Collagen Type in Globular Proteins. In: Journal of Molecular Biology, 170 (4). pp. 1045-1048.

Soman, KV and Ramakrishnan, C (1985) Solvent Accessibility Studies of \beta -Bends and Application to Cyclic Hexapeptides. In: Biopolymers, 24 (7). pp. 1205-1214.

Somlata, * and Kamanna, Sathisha and Agrahari, Mridula and Babuta, Mrigya and Bhattacharya, Sudha and Bhattacharya, Alok (2012) Autophosphorylation of Ser(428) of EhC2PK Plays a Critical Role in Regulating Erythrophagocytosis in the Parasite Entamoeba histolytica. In: Journal of Biological Chemistry, 287 (14). pp. 10844-10852.

Sonti, Rajesh and Dinesh, Bhimareddy and Basuroy, Krishnayan and Raghothama, Srinivasarao and Shamala, Narayanaswamy and Balaram, Padmanabhan (2014) C-12 Helices in Long Hybrid (alpha gamma)(n) Peptides Composed Entirely of Unconstrained Residues with Proteinogenic Side Chains. In: ORGANIC LETTERS, 16 (6). pp. 1656-1659.

Sonti, Rajesh and Gopi, Hosahudya N and Muddegowda, Umashankara and Ragothama, Srinivasarao and Balaram, Padmanabhan (2013) Designed three-stranded beta-sheet in an alpha/beta hybrid peptide. In: Chemistry - A European Journal, 19 (19). pp. 5955-5965.

Sonti, Rajesh and Gowd, Konkallu Hanumae and Rao, KN Shashanka and Ragothama, Srinivasarao and Rodriguez, Alex and Jesus Perez, Juan and Balaram, Padmanabhan (2013) Conformational Diversity in Contryphans from Conus Venom: cis-trans Isomerisation and Aromatic/Proline Interactions in the 23-Membered Ring of a 7-Residue Peptide Disulfide Loop. In: CHEMISTRY-A EUROPEAN JOURNAL, 19 (45). pp. 15175-15189.

Sonti, Rajesh and Rai, Rajkishor and Ragothama, Srinivasarao and Balaram, Padmanabhan (2012) NMR Analysis of Cross Strand Aromatic Interactions in an 8 Residue Hairpin and a 14 Residue Three Stranded beta-Sheet Peptide. In: JOURNAL OF PHYSICAL CHEMISTRY B, 116 (49). pp. 14207-14215.

Sonti, Rajesh and Rao, Shashanka K N and Chidanand, Sudarshan and Gowd, Konkallu Hanumae and Raghothama, Srinivasarao and Balaram, Padmanabhan (2014) Conformational Analysis of a 20-Membered Cyclic Peptide Disulfide from Conus virgo with a WPW Segment: Evidence for an Aromatic-Proline Sandwich. In: CHEMISTRY-A EUROPEAN JOURNAL, 20 (17). pp. 5075-5086.

Sopory, Shailaja and Balaji, S and Srinivasan, N and Visweswariah, Sandhya S (2003) Modeling and mutational analysis of the GAF domain of the cGMP-binding, cGMP-specific phosphodiesterase, PDE5. In: FEBS Letters, 539 (1-3). pp. 161-166.

Sowdhamini, R and Srinivasan, N and Shoichet, Brian and Santi, Daniel V and Ramakrishnan, C and Balaram, P (1989) Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis. In: Protein Engineering, 3 (2). pp. 95-103.

Sowdhamini, R and Ramakrishnan, C and Balaram, P (1993) Modelling multiple disulphide loop containing polypeptides by random conformation generation. The test cases of α-conotoxin GI and edothelin I. In: Protein Engineering, 6 (8). pp. 873-882.

Sowdhamini, R and Srinivasan, N and Ramakrishnan, C and Balaram, P (1992) Orthogonal beta-beta motifs in proteins. In: Journal of Molecular Biology, 223 (4). pp. 845-851.

Spector, Mark S and Easwaran, Kalpathy RK and Jyothi, Ghanta and Selinger, Jonatan V and Singh, Alok and Schnur, Joel M (1996) Chiral molecular self-assembly of phospholipid tubules: A circular dichroism study. In: Proceedings Of The National Academy Of Sciences Of The United States Of America, 93 (23). pp. 12943-12946.

Sreerama, N and Saraswathi, Vishveshwara (1989) Ab initio studies on proton transfer involving Schiff base and related nitrogen compounds. In: Journal of Molecular Structure, 212 . pp. 53-60.

Sreerama, N and Vishveshwara, S (1985) Studies involving electrostatic potential of valinomycin. In: Journal of Biosciences, 8 (1-2). 315 - 327.

Sreerama, N and Vishveshwara, Saraswathi (1987) Molecular mechanism of facilitated transport by carrier ionophores: A study of energetics. In: Journal of Biosciences, 12 (3). pp. 175-189.

Sreerama, N and Vishveshwara, Saraswathi (1989) An ab-initio study of the proton affinity of conjugated schiff-base and related nitrogen compounds: an analysis of the triggering site of bacteriorhodopsin. In: Journal of Molecular Structure, 194 . pp. 61-72.

Sreshty, Asha Latha M and Surolia, Avadhesha and Sastry, Narahari G and Murty, Suryanarayana U (2012) Deorphanization of Malonyl CoA:ACP Transacylase Drug Target in Plasmodium falciparum (PfFabD) Using Bacterial Antagonists: A Piggyback' Approach for Antimalarial Drug Discovery. In: Molecular informatics, 31 (3-4). pp. 281-299.

Sri Krishna, S and Hiremath, CN and Munshi, SK and Prahadeeswaran, D and Sastri, M and Savithri, HS and Murthy, MRN (1999) Three-dimensional Structure of Physalis Mottle Virus: Implications for the Viral Assembly. In: Journal of Molecular Biology, 289 (4). pp. 919-934.

Sri Krishna, S and Sastri, M and Savithri, HS and Murthy, MRN (2001) Structural Studies on the Empty Capsids of Physalis Mottle Virus. In: Journal of Molecular Biology, 307 (4). pp. 1035-1047.

Sridhara, S and Ananthanarayanan, VS and Fredrickson, RA and Zweifel, BO and Taylor, GT and Scheraga, HA (1981) Helix-coil stability constants for amino acids in nonaqueous solvents. Studies of random poly(-benzyl-L-glutamate-co-L-alanine) and poly(-benzyl-L-glutamate-co-L-leucine) in a mixed solvent. In: Biopolymers, 20 (7). 1435 -1458.

Sridhara, S and Ananthanarayanan, VS and Taylor, GT and Scheraga, HA (1977) Helix-Coil Stabilities of L-Alanine and L-Leucine in Mixed Organic Solvents. In: Biopolymers, 16 (11). pp. 2565-2568.

Sridharan, D and Seshagiri, P B (2017) Successful enrichment of cardiac progenitors following differentiation of EGFP-expressing transgenic mouse ES cells. In: ASCB/EMBO Meeting, DEC 02-06, 2017, Philadelphia, PA.

Srikalaivani, Rajapiramuthu and Singh, Amrita and Vijayan, Mamannamana and Surolia, Avadhesha (2018) Structure, interactions and action of Mycobacterium tuberculosis 3-hydroxyisobutyric acid dehydrogenase. In: BIOCHEMICAL JOURNAL, 475 (15). pp. 2457-2471.

Srikanth, S and Narayanan, R (2023) Heterogeneous off-target impact of ion-channel deletion on intrinsic properties of hippocampal model neurons that self-regulate calcium. In: Frontiers in Cellular Neuroscience, 17 .

Srimal, S and Surolia, N and Balasubramanian, S and Surolia, A (1996) Titration calorimetric studies to elucidate the specificity of the interactions of polymyxin B with lipopolysaccharides and lipid A. In: Biochemical journal, 315 (Part 2). pp. 679-686.

Srinivas, Kalyan V and Jain, Rishabh and Saurav, Subit and Sikdar, Sujit K (2007) Small-world network topology of hippocampal neuronal network is lost, in an in vitro glutamate injury model of epilepsy. In: European Journal of Neuroscience, 25 (11). pp. 3276-3286.

Srinivas, Kalyan V and Sikdar, Sujit Kumar (2008) Epileptiform activity induces distance-dependent alterations of the $Ca^{2+}$ extrusion mechanism in the apical dendrites of subicular pyramidal neurons. In: European Journal Of Neuroscience, 28 (11). pp. 2195-2212.

Srinivas, VR and Sharma, V and Surolia, Avadhesa (1997) Cloning and sequencing of the winged bean basic lectin. In: The FASEB Journal, 11 (9, Suppl. S). pp. 2274-1.

Srinivas, Oruganti and Mitra, Nivedita and Surolia, Avadhesha and Jayaraman, Narayanaswamy (2002) Photoswitchable multivalent sugar ligands: Synthesis, isomerization, and lectin binding studies of azobenzene-glycopyranoside derivatives. In: Journal of the American Chemical Society, 124 (10). pp. 2124-2125.

Srinivas, VR and Acharya, Shreeta and Rawat, Suman and Sharma, Vivek and Surolia, Avadhesha (2000) The primary structure of the acidic lectin from winged bean (Psophocarpus tetragonolobus): insights in carbohydrate recognition, adenine binding and quaternary association. In: FEBS Letters, 474 (1). pp. 76-82.

Srinivas, VR and Bachhawat-Sikder, Kiran and Habib, Saman and Hasnain, Seyed E and Surolia, Avadhesha (2001) Expression of Winged Bean Basic Agglutinin in Spodoptera frugiperda insect cell expression system. In: Bioscience Reports, 21 (3). pp. 361-367.

Srinivas, VR and ReddY, GBhanuprakash and Ahmad, Nisar and Swaminathan, Chittoor P and Mitra, Nivedita and Surolia, Avadhesha (2001) Legume lectin family, the 'natural mutants of the quaternary state' provide insights into the relationship between protein stability and oligomerization. In: Biochimica Et Biophysica Acta-General Subjects, 1527 (3). pp. 102-111.

Srinivas, VR and Reddy, Bhanuprakash G and Surolia, Avadhesa (1999) A predominantly hydrophobic recognition of H-antigenic sugars by winged bean acidic lectin: A thermodynamic study. In: FEBS Letters, 450 (3). pp. 181-185.

Srinivas, VR and Singha, Netai C and Schwarz, Fredrick P and Surolia, Avadhesa (1998) Differential scanning calorimetric studies of the glycoprotein, winged bean acidic lectin, isolated from the seeds of Psophocarpus tetrogonolobus. In: FEBS Letters, 425 (1). pp. 57-60.

Srinivasa, HT and Palakshamurthy, BS and Venkatesha, MA (2019) Thermal/photophysical properties of cyanobiphenyl based unsymmetrical molecules: Synthesis and evaluation. In: Materials Today: Proceedings, 17 . pp. 41-50.

Srinivasa, HT and Venkatesha, MA and Reddy, Madhusudana M B (2015) Effect of lateral substituent and chain length on mesomorphic properties of novel alkoxy benzyloxy benzoates of cyanophenyl rod-shaped compounds. In: JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY, 119 (3). pp. 1887-1893.

Srinivasan, AR and Yathindra, N and Rao, VSR and Prakash, S (1980) Preferred Phosphodiester Conformations in Nucleic Acids. A Virtual Bond Torsion Potential to Estimate Lone-Pair Interactions in a Phosphodiester. In: Biopolymers, 19 (1). pp. 165-171.

Srinivasan, Bharath and Forouhar, Farhad and Shukla, Arpit and Sampangi, Chethana and Kulkarni, Sonia and Abashidze, Mariam and Seetharaman, Jayaraman and Lew, Scott and Mao, Lei and Acton, Thomas B and Xiao, Rong and Everett, John K and Montelione, Gaetano T and Tong, Liang and Balaram, Hemalatha (2014) Allosteric regulation and substrate activation in cytosolic nucleotidase II from Legionella pneumophila. In: FEBS JOURNAL, 281 (6). pp. 1613-1628.

Srinivasan, E and Nagaraj, S and Rajendran, S and Rajasekaran, R (2023) Editorial: Decoding novel therapeutic targets, biomarkers, and drug development strategies against neurodegenerative disordersâ��A multi-omics approach. In: Frontiers in Computational Neuroscience, 17 .

Srinivasan, N and Antonelli, Marcelo and Jacob, Germaine and Korn, Iris and Jedlicki, Ana and Dhanaraj, V and Sayed, Muhammed FR and Blundell, Tom L and Allende, Catherine C and Allende, Jorge E (1999) Structural interpretation of site-directed mutagenesis and specificity of the catalytic subunit of protein kinase CK2 using comparative modelling. In: Protein Engineering, 12 (2). pp. 119-127.

Srinivasan, N and Anuradha, VS and Ramakrishnan, C and Sowdhamini, R and Balaram, P (1994) Conformational characteristics of asparaginyl residues in proteins. In: International Journal of Peptide & Protein Research, 24 (2). pp. 112-122.

Srinivasan, N and Mudgal, R and Kumar, G and Chandra, NR and Sowdhamini, R and Sandhya, S (2015) Bridging the islands of protein families in sequence space using artificial sequences. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). pp. 103-104.

Srinivasan, N and Sowdhamini, R and Bhattacharya, Alok (2007) Computational biology: More than just a set of techniques. In: Journal of Biosciences, 32 (1). pp. 1-2.

Srinivasan, N and Sowdhamini, R and Ramakrishnan, C and Balaram, P (1990) Conformations of disulfide bridges in proteins. In: International Journal of Peptide and Protein Research, 36 (2). pp. 147-155.

Srinivasan, N and Sowdhamini, Ramanathan and Ramakrishnan, Chandrashekharan and Balaram, Padmanabhan (1991) Analysis of short loops connecting secondary structural elements in proteins. In: Molecular Conformation and Biological Interactions . pp. 59-73.

Srinivasan, Narayanaswamy (2019) Chandrasekharan Ramakrishnan (1939-2019): The student behind the Ramachandran map IN MEMORIAM. In: PROTEIN SCIENCE .

Srinivasan, Y and Ramprasad, MP and Surolia, A (1985) Chemical Modification Studies of Gelonin - Involvement of Arginine Residues in Biological-Activity. In: FEBS Letters, 192 (1). pp. 113-118.

Srivastava, Achal K and Choudhry, Shweta and Gopinath, Musuwadi S and Roy, Sanghamitra and Tripathi, Manjari and Brahmachari, Samir K and Jain, Satish (2001) Molecular and clinical correlation in five Indian families with spinocerebellar ataxia 12. In: Annals of Neurology, 50 (6). pp. 796-800.

Srivastava, A and Rajaraman, V (1995) A vector measure for the intelligence of a question-answering (Q-A) system. In: IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans, 25 (5). pp. 814-823.

Srivastava, Sandeep K and Rajasree, Kalagiri and Fasim, Aneesa and Arakere, Gayathri and Gopal, Balasubramanian (2014) Influence of the AgrC-AgrA Complex on the Response Time of Staphylococcus aureus Quorum Sensing. In: JOURNAL OF BACTERIOLOGY, 196 (15). pp. 2876-2888.

Srivastava, Sandeep Kumar and Gayathri, Savitha and Manjasetty, Babu A and Gopal, Balasubramanian (2012) Analysis of Conformational Variation in Macromolecular Structural Models. In: PLOS ONE, 7 (7).

Srivastava, Sandeep Kumar and Rajasree, Kalagiri and Gopal, B (2011) Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1814 (10). pp. 1349-1357.

Stenovec, M and Chowdhury, HH and Sikdar, SK and Kreft, M and Milisav, I and Krzan, M and Zorec, R (2003) Regulated exocytosis studied by confocal microscopy. In: Biophysical Journal, 84 (2). 210A-210A.

Stephen, Suresh and Padmanaban, S and Vijayan, M (1996) DL-Glutamine. In: Acta Crystallographica Section C, 52 . pp. 1313-1316.

Stephen, Suresh and Padmanaban, S and Vijayan, M (1994) X-ray Studies on Crystalline Complexes Involving Amino-Acids and Peptides.27. Effect of Chirality, Specific International and Characteristics Aggregation Patterns in the Structures of Arginine and its Complexes with Formic-Acid. In: Journal of Biomolecular Structure and Dynamics, 11 (6). pp. 1425-1435.

Stephen, Suresh and Vijayan, M (1995) Variability in ionization state, stoichiometry and aggregation in histidine complexes with formic acid. In: Journal of Biosciences, 20 (2). pp. 225-234.

Stephen, Suresh and Vijayan, M (1995) X-ray Studies on Crystalline Complexes Involving Amino Acids and Peptides. XXVIII. Recurrence of Characteristic Aggregation and Interaction Patterns in the Crystal Structures of OL- and L-Lysine Formate. In: Acta Crystallographica, 51 (Sectio). pp. 353-358.

Stober, TM and Batulin, D and Triesch, J and Narayanan, R and Jedlicka, P (2023) Degeneracy in epilepsy: multiple routes to hyperexcitable brain circuits and their repair. In: Communications Biology, 6 (1).

Subbayya, IN and Ray, SS and Balaram, P and Balaram, H (1997) Metabolic enzymes as potential drug targets in Plasmodium falciparum. In: Indian Journal of Medical Research, 106 . pp. 79-94.

Subhadarshini, S and Markus, J and Sahoo, S and Jolly, MK (2023) Dynamics of Epithelial-Mesenchymal Plasticity: What Have Single-Cell Investigations Elucidated So Far? In: ACS Omega, 8 (13). pp. 11665-11673.

Subhadarshini, S and Tandon, H and Srinivasan, N and Sowdhamini, R (2024) Normal Mode Analysis Elicits Conformational Shifts in Proteins at Both Proximal and Distal Regions to the Phosphosite Stemming from Single-Site Phosphorylation. In: ACS Omega .

Subramaniam, K and Sankar, PV (1973) Error Checking Digit for Nonconventional Chemical Codes. In: Journal of chemical documentation, 13 (1). pp. 39-40.

Subramanian, K and Krishnan, S and Krishnamurthy, EV (1974) Huffman Binary Coding of WLN Symbols for File-Compression. In: Journal of Chemical Documentation, 14 (3). pp. 146-149.

Subramanya, HS and Gopinathan, K and Nayudu, MV and Savithri, HS and Murthy, MRN (1993) Structure of Sesbania Mosaic Virus at 4·7 Å Resolution and Partial Sequence of the Coat Protein. In: Journal of Molecular Biology, 229 (1). pp. 20-25.

Subramanyan, V and Kirkpatrick, KL and Vishveshwara, S and Vishveshwara, S (2023) Are microtubules electron-based topological insulators? In: EPL, 143 (4).

Sudarslal, S and Majumdar, Sriparna and Ramasamy, P and Dhawan, Ritu and Pal, Prajna P and Ramaswami, Mani and Lala, Anil K and Sikdar, SK and Sarma, Siddhartha P and Krishnan, KS and Balaram, P (2003) Sodium channel modulating activity in a delta-conotoxin from an Indian marine snail. In: FEBS Letters, 553 (1-2). pp. 209-212.

Sudarslal, Sadasivannair and Singaravadivelan, Govindaswamy and Ramasamy, Palanisamy and Ananda, Kuppanna and Sarma, Siddhartha P and Sikdar, Sujit K and Krishnan, KS and Balaram, Padmanabhan (2004) A novel 13 residue acyclic peptide from the marine snail, Conus monile, targets potassium channels. In: Biochemical and Biophysical Research Communications, 317 (3). pp. 682-688.

Sudha, Govindarajan and Naveenkumar, Nagarajan and Srinivasan, Narayanaswamy (2015) Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 83 (10). pp. 1766-1786.

Sudha, Govindarajan and Nussinov, Ruth and Srinivasan, Narayanaswamy (2014) An overview of recent advances in structural bioinformatics of protein-protein interactions and a guide to their principles. In: PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 116 (2-3). pp. 141-150.

Sudha, Govindarajan and Singh, Prashant and Swapna, Lakshmipuram S and Srinivasan, Narayanaswamy (2015) Weak conservation of structural features in the interfaces of homologous transient protein-protein complexes. In: PROTEIN SCIENCE, 24 (11). pp. 1856-1873.

Sudha, Govindarajan and Srinivasan, Narayanaswamy (2016) Comparative analyses of quaternary arrangements in homo-oligomeric proteins in superfamilies: Functional implications. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (9). pp. 1190-1202.

Sudha, Govindarajan and Yamunadevi, Subburaj and Tyagi, Nidhi and Das, Saumitra and Srinivasan, Narayanaswamy (2012) Structural and molecular basis of interaction of HCV non-structural protein 5A with human casein kinase 1 alpha and PKR. In: BMC STRUCTURAL BIOLOGY, 12 .

Sudha, R and Panda, M and Chandrasekhar, J and Balaram, P (2002) Structural Effects on the Formation of Proton and Alkali Metal Ion Adducts of Apolar, Neutral Peptides: Electrospray Ionization Mass Spectrometry and Ab Initio Theoretical Studies. In: Chemistry - A European Journal, 8 (21). pp. 4980-4991.

Sudha, TS and Balaram, P (1981) Conformational Flexibility in Enkephalins: Solvent Dependent Transitions in Peptides with Gly-Gly Segments Detected by Circular Dichroism. In: FEBS Letters, 134 (1). pp. 32-36.

Sudha, TS and Balaram, P (1983) Stabilization of $\beta$ -turn conformations in enkephalins. $\alpha$ -Aminoisobutyric acid analogs. In: International Journal of Peptide & Protein Research, 21 (4). pp. 381-388.

Sudhakar, V and Bhat, TN and Vijayan, M (1980) Studies on crystalline complexes involving amino acids. V. The structure of L-serine-L-ascorbic acid. In: Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry, 36 (1). pp. 125-128.

Sudhakar, V and Vijayan, M (1977) Preparation and preliminary x-ray studies of arginine ascorbate, a crystalline complex between an amino-acid and a-vitamin. In: Current science, 46 (1). p. 9.

Sudhakar, V and Vijayan, M (1980) X-ray studies on crystalline complexes involving amino acids. IV. The structure of L-arginine L-ascorbate. In: Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry, 36 (1). pp. 120-125.

Sudhakaran, Perumana R and Surolia, Avadhesha and Mandal, Chitra (2014) Highlights 2014 on glycoscience; glycosyltransferases and glycobiomarkers. In: GLYCOCONJUGATE JOURNAL, 31 (6-7). pp. 401-402.

Sudhanand, Prasad and Rao, Balaji R and Balaram, P (1995) Contrasting solution conformations of peptides containing alpha,alpha-dialkylated residues with linear and cyclic side chains. In: Biopolymers, 35 (1). pp. 11-20.

Sudhindra, Boray S (1987) Self - consistent molecular modelling approach for receptor identification and drug design: Basic and data base needs. In: Journal of Indian Institute of Science, 67 (1-2). pp. 1-28.

Suguna, K and Ramakumar, S and Nagaraj, R and Balaram, P (1985) Structure Of Cyclo(-Alpha-Aminoisobutyryl-L-Phenylalanyl-), C13h16n2o2. In: ACTA Crystallographica Section C-Crystal Structure Communications, 41 (Feb). pp. 284-286.

Suguna, K and Ramakumar, S and Nagaraj, R and Balaram, P (1985) Structure of cyclo(\alpha- Aminoisobutyryl-L-phenylalanyl-), $C_{13}H_{16}N_2O_2$. In: Acta Crystallographica Section C: Crystal Structure Communications, 41 (2). pp. 284-286.

Suguna, K and Ramakumar, S and Shamala, N and Prasad, Venkataram BV and Balaram, P (1982) Crystal Structures of Diketopiperazines Containing \alpha-Aminoisobutyric Acid: Cyclo(Aib-Aib) and Cyclo(Aib-L-Ile). In: Biopolymers, 21 (9). pp. 1847-1855.

Suguna, K and Rao, Durga C (2010) Rotavirus nonstructural proteins: a structural perspective. In: Current Science (Bangalore), 98 (3). pp. 352-359.

Suguna, Kaza and Surolia, Avadhesha and Surolia, Namita (2001) Structural Basis for Triclosan and NAD Binding to Enoyl-ACP Reductase of Plasmodium falciparum. In: Biochemical and Biophysical Research Communications, 283 (1). pp. 224-228.

Sujatha, S and Balaji, S and Srinivasan, N (2001) PALI: a database of alignments and phylogeny of homologous protein structures. In: Bioinformatics, 17 (4). pp. 375-376.

Sujatha, Sitaraman and Chatterji, Dipankar (1999) Detection of putative Zn(II) binding sites within Escherichia coli RNA polymerase: inconsistency between sequence-based prediction and $^{65}Zn$ blotting. In: Federation of European Biochemical Societies Letters, 454 (1-2). pp. 169-171.

Sujatha, Sitaraman and Chatterji, Dipankar (2000) Understanding protein–protein interactions by genetic suppression. In: Journal of Genetics, 79 (3). pp. 125-129.

Sukhwal, Anshul and Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2011) Network approach for capturing ligand-induced subtle global changes in protein structures. In: Acta Crystallographica Section D, 67 (Part 5). pp. 429-439.

Sukumar, N and Biswal, BK and Vijayan, M (1999) Structures of orthorhombic lysozyme grown at basic pH and its low-humidity variant. In: Acta Crystallographica Section D: Biological Crystallography, 55 (4). pp. 934-937.

Sukumara, M and Raja, Antony P and Balaram, P and Becker, EL (1985) A Highly Active Chemotactic Peptide Analog Incorporating the Unusual Residue 1-Aminocyclohexanecarboxylic Acid at Position 2. In: Biochemical and Biophysical Research Communications, 128 (1). pp. 339-344.

Suman, S Thakur and Balaram, Padmanabhan (2009) Characterization of Alkali Induced Formation of Lanthionine, Trisulfides, and Tetrasulfides from Peptide Disulfides using Negative Ion Mass Spectrometry. In: Journal of the American Society for Mass Spectrometry, 20 (5). 783 -791.

Sun, S and Yadav, V and Billmyre, B and Sanyal, K and Heitman, J (2016) Chromosomal Translocations via Intercentromeric Recombination Underlie Mating Transitions during Fungal Evolution. In: CYTOGENETIC AND GENOME RESEARCH, 148 (2-3). pp. 86-87.

Sundaramoorthy, M and Parrack, P and Sasisekharan, V (1986) Application of the precession method to fiber diffraction: structural variations in lithium B-DNA. In: Proceeding Conversation Discipline Biomolecular Stereodynamics, pp. 217-225.

Sundaramoorthy, M (1987) Precession photography of fibres: Prediction of patterns. In: Pramana, 28 (4). pp. 415-424.

Sunil, A and David, SA and Bethany, Bechtel and Cariappa, Annaiah and Mathan, VI and Balaram, P (1994) Interaction of cationic amphiphilic drugs with lipid A: Implications for development of endotoxin antagonists. In: Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism, 1212 (2). pp. 167-175.

Sunil, A David and Satish, K Awasthi and Balaram, P (2000) The role of polar and facial amphipathic character in determining lipopolysaccharide-binding properties in synthetic cationic peptides. In: Journal of Endotoxin Research, 6 (3). pp. 249-256.

Sunny, SP and Ravindra, DR and Hariharan, A and Mukhia, N and Gurudath, S and Keerthi, G and Raghavan, S and Kolur, T and Shetty, V and Vidya Bushan, R and Surolia, A and Satyajit, T and Chandrashekhar, P and Nisheena, R and Pandya, HJ and Pillai, V and Praveen Birur, N and Kuriakose, MA and Suresh, A (2023) CD44-SNA1 integrated cytopathology for delineation of high grade dysplastic and neoplastic oral lesions. In: PLoS ONE, 18 (9 Sept).

Suresh, CG and Vijayan, M (1983) Occurrence and geometrical features of head-to-tail sequences involving amino acids in crystal structures. In: International Journal of Peptide & Protein Research, 22 (2). pp. 129-143.

Suresh, CG and Vijayan, M (1984) Patterns Of Peptide Aggregation And The Crystal-Structure Of A 1-1 Complex Between L-Histidyl-L-Serine And Glycyl L-Glutamic Acid. In: Acta Crystallographica Section A, 40 . C67-C67.

Suresh, CG and Vijayan, M (1985) X-Ray Studies On Crystalline Complexes Involving Amino-Acids And Peptides .11. Peptide Aggregation And Water-Structure In The Crystals Of A Hydrated 1-1 Complex Between L-Histidyl-L-Serine And Glycyl-L-Glutamic Acid. In: International Journal of Peptide and Protein Research, 26 (3). 329 -336.

Suresh, CG and Vijayan, M (1985) X-ray studies on crystalline complexes involving amino acids and peptides. XII. Peptide aggregation and water structure in the crystals of a hydrated 1:1 complex between L-histidyl-L-serine and glycyl-L-glutamic acid. In: International journal of peptide & protein research, 26 (3). pp. 329-336.

Suresh, CG and Vijayan, M (1983) X-ray studies on cyrstalline complexes involving amino acids and peptides. VIII. Head-to-tail arrangement and a specific interaction in the crystal structure of L-arginine acetate. In: International Journal of Peptide & Protein Research, 21 (3). pp. 223-226.

Suresh, CG and Vijayan, M (1983) x-ray studies on crystalline complexes involving amino-acids and peptides .10. head-to-tail sequences in the crystal-structure of l-lysine acetate. In: International Journal of Peptide and Protein Research, 22 (5). pp. 617-621.

Suresh, CG and Ramaswamy, Jayanthi and Vijayan, M (1986) X-ray Studies on Crystalline Complexes Involving Amino Acids and Peptides. XIII. Effect of Chirality on Molecular Aggregation: The Crystal Structures of $L$-Arginine $D$-Aspartate and $L$-Arginine $D$-Glutamate Trihydrate. In: Acta Crystallographica, B42 (5). pp. 473-478.

Suresh, CG and Ramaswamy, Jayanthi and Vijayan, M (1986) X-ray Studies on Crystalline Complexes Involving Amino Acids and Peptides. XIII. Effect of Chirality on Molecular Aggregation: The Crystal Structures of L-Arginine D-Aspartate and L-Arginine D-Glutamate Trihydrate. In: Acta Crystallographica Section B Structural Science, 42 (5). pp. 473-478.

Suresh, CG and Vijayan, M (1987) X-ray studies on crystalline complexes involving amino acids and peptides. Part XIV: Closed conformation and head-to-tail arrangement in a new crystal form of L-histidine L-aspartate monohydrate. In: Journal of Biosciences, 12 (1). pp. 13-21.

Suresh, Stephen and Prasad, Sridhar G and Vijayan, M (1994) X-ray Studies on Crystalline Complexes Involving Amino-Acid and Peptides .26. Crystal-Structures of 2 forms of L-Histidine Acetate and a Comparative-study of the Amino-Acid Complexes of Acetic-Acid. In: International Journal of Peptide and Protein Research, 43 . pp. 139-145.

Suresh, Stephen and Rani, Geetha P and Pratap, Venkatesh J and Sankaranarayanan, R and Surolia, A and Vijayan, M (1997) Homology between jacalin and artocarpin from jackfruit (Artocarpus integrifolia) seeds. Partial sequence and preliminary crystallographic studies of artocarpin. In: Acta Crystallographica Section D-Biological Crystallography, 53 (Part 4). pp. 469-471.

Suresh Kumar, EVK and Singh, Jai D and Singh, Harkesh B and Das, Kalyan and Yakhmic, Jatinder V and Butcher, Ray J (1998) Dithiaheterocycle-annelated tetrathiafulvalene pi-donors: a structure-property correlation study. In: The Journal of Chemical society Parkin Trnansactions 1 (11). pp. 1769-1778.

SureshKumar, H and Appadurai, R and Srivastava, A (2024) Glycans modulate lipid binding in Lili-Mip lipocalin protein: insights from molecular simulations and protein network analyses. In: Glycobiology, 34 (2).

Surolia, A (2005) Interactions of calreticulin with its substrate and the mode of its chaperone function. In: The FASEB Journal, 19 (4). A869-A869.

Surolia, A and Bishayee, S and Ahmad, A and Balasubramanian, KA (1975) Studies on the interaction of concanavalin A with glycoproteins. In: Adv Exp Med Biol, 55 . pp. 95-115.

Surolia, A and Prakash, N and Bishayee, S and Bachhawat, BK (1973) Isolation and comparative physico-chemical studies of concanavalin A from Canavalia ensiformis and Canavalia gladiata. In: Indian Journal of Biochemistry and Biophysics, 10 (3). pp. 145-148.

Surolia, Avadhesha and Bachhawat, BK and Podder, SK (1975) Interaction between lectin from Ricinus communis and liposomes containing gangliosides. In: Nature, 257 (5529). 802 -804.

Surolia, Avadhesha and Bachhawat, BK and Vithyathil, PJ and Podder, SK (1978) Unique subunit structure for Ricinus communis agglutinin. In: Indian Journal of Biochemistry & Biophysics, 15 (4). pp. 248-250.

Surolia, A (2002) Carbohydrate recognition by legume lectins and the endoplasmic reticulum chaperones calreticulin and calnexin. In: Glycobiology, 12 (10). p. 686.

Surolia, A (1988) Elucidation Of The Exquisite Anti-T Specificity Of Artocarpus-Integrifolia Lectin And The Subunit Heterogeneity In Molecule. In: Current Science (Bangalore), 57 (3). p. 138.

Surolia, A (1982) Interaction of protein A with the domains of Fc fragment. In: Trends in Biochemical Sciences, 7 (9). pp. 318-319.

Surolia, A (1997) Plant lectins and their recognition mechanisms. In: The FASEB Journal, 11 (9). A1283-A1283 .

Surolia, A (1997) Professor Bimal Kumar Bachhawat: An outstanding scientist and a splendid human being - Obituary. In: Glycoconjugate Journal, 14 (3). pp. 311-312.

Surolia, A (1997) An outstanding scientist and a splendid human being: Prof Bimal Kumar Bachhawat. In: Glycobiology, 7 (4). R5-R6.

Surolia, A and Puri, KD (1993) Exploring molecular basis of protein-sugar interactions. In: Glycoconjugate Journal, 10 (4). p. 274.

Surolia, A and Ramprasad, MP (1986) Immunotoxins to combat AIDS. In: Nature, 322 (6075). pp. 119-120.

Surolia, Avadesha and Pain, Debkumar and Khan, M Islam (1982) Protein A: nature's universal anti-antibody. In: Trends in Biochemical Sciences, 7 (2). pp. 74-76.

Surolia, Avadhesha and Balasubramanian, AS and Bhaduri, AN and Datta, Asis and Gupta, CM and Basu, Sandip (1996) Bimal Kumar Bachhawat - An obituary. In: Current Science (Bangalore), 71 (11). 932-933 .

Surolia, Avadhesha and Pain, Debkumar and Khan, M Islam (1982) Protein A: nature's universal anti-antibody. In: Trends in Biochemical Sciences, 7 (2). pp. 74-76.

Surolia, Avadhesha and Ramya, TNC and Ramya, V and Surolia, Namita (2004) ‘FAS’t inhibition of malaria. In: Biochemical Journal, 383 (3). pp. 401-412.

Surolia, Avadhesha and Sharon, Nathan and Schwarz, Frederick P (1996) Thermodynamics of Monosaccharide and Disaccharide Binding to Erythrina corallodendron Lectin. In: Journal of Biological Chemistry, 271 (30). 17697 -17703.

Surolia, Avadhesha and Swaminathan, Chittoor P and Ramkumar, Radha and Podder, Sunil K (1997) Unusual structural stability and ligand induced alterations in oligomerization of a galectin. In: FEBS Letters, 409 (3). pp. 417-420.

Surolia, Ira and Chhibber, Manmohan and Sarkar, Debi Prasad and Sinha, Sharmistha (2008) Fibrillogenesis in ADan peptides is inhibited by biphenyl ethers. In: Biochemical and Biophysical Research Communications, 370 (4). pp. 681-686.

Surolia, Ira and Reddy, Bhanuprakash G and Sinha, Sharmistha (2006) Hierarchy and the Mechanism of Fibril formation in ADan Peptides. In: Journal of Neurochemistry, 99 (2). pp. 537-548.

Surolia, Ira and Sarkar, Debi Prasad and Sinha, Sharmistha (2008) Form and dimensions of aggregates dictate cytotoxicities of Danish dementia peptides. In: Biochemical and Biophysical Research Communications, 372 (1). pp. 62-66.

Surolia, N and Surolia, A (2001) Triclosan offers protection against blood stages of malaria by inhibiting enoyl-ACP reductase of Plasmodium falciparum. In: Nature Medicine, 7 (2). pp. 167-173.

Surolia, Namita and Surolia, Avadhesha (2011) Reply to:Triclosan is minimally effective in rodent malaria models Reply. In: Nature Medicine, 17 (1). pp. 34-35.

Surolina, Namita and Kamalapriya, Dharmarajan and Ramadhani, Nagaraja Thirumala (2001) Use of Hydroxydiphenyl ether class of chemicals, as exemplified by Triclosan, as an antimalarial and identification of fatty acid synthesis as its target. Patent Number(s) WO 0100138 A2;EP 1137386 A2 . Patent Assignee(s) Indian Institute of Science;Jawaharlal Nehru Centre for Advanced Scientific Research.

Suryanarayana, S and Rao, Appaji N and Murthy, MRN and Savithri, HS (1989) Primary structure of belladonna mottle virus coat protein. In: Journal of Biological Chemistry, 264 (11). pp. 6273-6279.

Sutton, Troy C and Chakraborty, Saborni and Mallajosyula, Vamsee V A and Lamirande, Elaine W and Ganti, Ketaki and Bock, Kevin W and Moore, Ian N and Varadarajan, Raghavan and Subbarao, Kanta (2017) Protective efficacy of influenza group 2 hemagglutinin stem-fragment immunogen vaccines. In: NPJ VACCINES, 2 .

Swaminathan, CP and Gupta, D and Sharma, V and Surolia, Avadhesa (1997) Effect of substituents on the thermodynamics of D-galactopyranoside binding to winged bean (Psophocarpus tetragonolobus) basic lectin. In: Biochemistry, 36 (43). pp. 13428-13434.

Swaminathan, Chittoor P and Gupta, Aditi and Surolia, Namita and Surolia, Avadhesha (2000) Plasticity in the Primary Binding Site of Galactose/N-Acetylgalactosamine-specific Lectins. In: The Journal of Biological Chemistry, 275 (37). pp. 28483-28487.

Swaminathan, Chittoor P and Gupta, Aditi and Surolia, Namita and Surolia, Avadhesha (2000) Plasticity in the primary binding site of galactose/N-acetylgalactosamine-specific lectins - Implication of the C-H center dot center dot center dot O hydrogen bond at the specificity-determining C-4 locus of the saccharide in 4-methoxygalactose recognition by jacalin and winged bean (basic) agglutinin I. In: Journal of Biological Chemistry, 275 (37). pp. 28483-28487.

Swaminathan, Chittoor P and Surolia, Namita and Surolia, Avadhesha (1998) Role of water in the specific binding of mannose and mannooligosaccharides to concanavalin A. In: Journal of the American Chemical Society, 120 (21). pp. 5153-5159.

Swamy, MJ and Surolia, A (1988) Fluorescence temperature-jump relaxation studies on the binding of N-dansylgalactosamine to soybean agglutinin. In: Indian Journal of Biochemistry & Biophysics, 25 (1-2). pp. 152-155.

Swamy, MJ and Surolia, A (1988) The quaternary structure of soybean agglutinin: chemical cross-linking studies. In: Indian Journal of Biochemistry & Biophysics, 25 (6). pp. 566-568.

Swamy, MJ and Gupta, D and Mahanta, SK and Surolia, A (1991) Further characterization of the saccharide specificity of peanut (Arachis hypogaea) agglutinin. In: Carbohydrate Research, 213 . pp. 59-67.

Swamy, MJ and Sastry, M V Krishna and Khan, MI and Surolia, A (1986) Thermodynamic and kinetic studies on saccharide binding to soya-bean agglutinin. In: Biochemical Journal, 234 (3). 515 -522.

Swamy, Musti Joginadha and Surolia, Avadhesha (1989) Studies on the tryptophan residues of soybean agglutinin. Involvement in saccharide binding. In: Bioscience Reports, 9 (2). pp. 189-198.

Swapna, Lakshmipuram S and Bhaskara, Ramachandra M and Sharma, Jyoti and Srinivasan, Narayanaswamy (2012) Roles of residues in the interface of transient protein-protein complexes before complexation. In: Scientific Reports, 2 .

Swapna, Lakshmipuram S and Mahajan, Swapnil and Brevern, Alexandre G de and Srinivasan, Narayanaswamy (2012) Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins. In: BMC Structural Biology, 12 .

Swapna, Lakshmipuram S and Srinivasan, Narayanaswamy and Robertson, David L and Lovell, Simon C (2012) The origins of the evolutionary signal used to predict protein-protein interactions. In: BMC EVOLUTIONARY BIOLOGY, 12 .

Swapna, Lakshmipuram Seshadri and Srikeerthana, Kuchi and Srinivasan, Narayanaswamy (2012) Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance. In: PLOS ONE, 7 (5).

Swarnamukhi, P Lakshmi and Sharma, Shailendra Kumar and Bajaj, Preeti and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2006) Crystal structure of dimeric FabZ of Plasmodium falciparum reveals conformational switching to active hexamers by peptide flips. In: FEBS Letters, 580 (11). pp. 2653-2660.

Swarnamukhi, Pidugu L and Sharma, Shailendra K and Padala, Prasanth and Surolia, Namita and Surolia, Avadhesha and Suguna, Kaza (2007) Packing and loop-structure variations in non-isomorphous crystals of FabZ from Plasmodium falciparum. In: Acta Crystallographica Section D Biological Crystallography, 63 (4). pp. 458-464.

Syal, Kirtimaan (2016) BCG vaccine fails to prevent the reactivation of latent tuberculosis. In: MEDICAL HYPOTHESES, 88 . p. 82.

Syal, Kirtimaan (2014) Point of care testing for measurement of white blood cell count and C-reactive protein levels in blood. In: CLINICA CHIMICA ACTA, 437 . p. 218.

Syal, Kirtimaan and Bhardwaj, Neerupma and Chatterji, Dipankar (2017) Vitamin C targets (p)ppGpp synthesis leading to stalling of long-term survival and biofilm formation in Mycobacterium smegmatis. In: FEMS MICROBIOLOGY LETTERS, 364 (1).

Syal, Kirtimaan and Chakraborty, Surajit and Bhattacharyya, Rajasri and Banerjee, Dibyajyoti (2015) Combined inhalation and oral supplementation of Vitamin A and Vitamin D: A possible prevention and therapy for tuberculosis. In: MEDICAL HYPOTHESES, 84 (3). pp. 199-203.

Syal, Kirtimaan and Chatterji, Dipankar (2015) Differential binding of ppGpp and pppGpp to E-coli RNA polymerase: photo-labeling and mass spectral studies. In: GENES TO CELLS, 20 (12). pp. 1006-1016.

Syal, Kirtimaan and Chatterji, Dipankar (2018) Vitamin C: A Natural Inhibitor of Cell Wall Functions and Stress Response in Mycobacteria. In: BIOCHEMICAL AND BIOPHYSICAL ROLES OF CELL SURFACE MOLECULES, 1112 . pp. 321-332.

Syal, Kirtimaan and Flentie, Kelly and Bhardwaj, Neerupma and Maiti, Krishnagopal and Jayaraman, Narayanaswamy and Stallings, Christina L and Chatterji, Dipankar (2017) Synthetic (p)ppGpp Analogue Is an Inhibitor of Stringent Response in Mycobacteria. In: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 61 (6).

Syal, Kirtimaan and Joshi, Himanshu and Chatterji, Dipankar and Jain, Vikas (2015) Novel pppGpp binding site at the C-terminal region of the Rel enzyme from Mycobacterium smegmatis. In: FEBS JOURNAL, 282 (19). pp. 3773-3785.

Syal, Kirtimaan and Karande, Anjali A (2012) IgG2 subclass isotype antibody and intrauterine infections. In: CURRENT SCIENCE, 102 (11). pp. 1534-1538.

Syal, Kirtimaan and Maiti, Krishnagopal and Naresh, Kottari and Avaji, Prakash Gouda and Chatterji, Dipankar and Jayaraman, Narayanaswamy (2016) Synthetic arabinomannan glycolipids impede mycobacterial growth, sliding motility and biofilm structure. In: GLYCOCONJUGATE JOURNAL, 33 (5). pp. 763-777.

Syal, Kirtimaan and Maiti, Krishnagopal and Naresh, Kottari and Chatterji, Dipankar and Jayaraman, N (2015) Synthetic Glycolipids and (p)ppGpp Analogs: Development of Inhibitors for Mycobacterial Growth, Biofilm and Stringent Response. In: BIOCHEMICAL ROLES OF EUKARYOTIC CELL SURFACE MACROMOLECULES , 842 . pp. 309-327.

Syal, Kirtimaan and Maiti, Krishnagopal and Naresh, Kottari and Chatterji, Dipankar and Jayaraman, N (2015) Synthetic Glycolipids and (p)ppGpp Analogs: Development of Inhibitors for Mycobacterial Growth, Biofilm and Stringent Response. In: International Symposium on the Biochemical Role of Eukaryotic Cell surface Macromolecules, JAN, 2014, Kolkata, INDIA, pp. 309-327.

Syal, Kirtimaan and Tadala, Raghu (2015) Modifications in Trypsin Digestion Protocol for Increasing the Efficiency and Coverage. In: PROTEIN AND PEPTIDE LETTERS, 22 (4). pp. 372-378.

T

Tagare, SG (1973) Effect of ion temperature on propagation of ion-acoustic solitary waves of small amplitudes in collisionless plasma. In: Plasma Physics and Controlled Fusion, 15 (12). pp. 1247-1252.

Talla, Venu and Narayanan, Chitra and Srinivasan, Naranaswamy and Balasubramanian, Dorairajan (2006) Mutation Causing Self-Aggregation in Human \gamma C-Crystallin Leading to Congenital Cataract. In: Investigative Ophthalmology & Visual Science, 47 (12). pp. 5212-5217.

Talla, Venu and Srinivasan, Narayanaswamy and Balasubramanian, Dorairajan (2008) Visualization of in situ intracellular aggregation of two cataract-associated human gamma-crystallin mutants: Lose a tail, lose transparency. In: Investigative Ophthalmology & Visual Science, 49 (8). pp. 3483-3490.

Tan, Kuan Pern and Khare, Shruti and Varadarajan, Raghavan and Madhusudhan, Mallur Srivatsan (2014) TSpred: a web server for the rational design of temperature-sensitive mutants. In: NUCLEIC ACIDS RESEARCH, 42 (W1). W277-W284.

Tan, Kuan Pern and Nguyen, Thanh Binh and Patel, Siddharth and Varadarajan, Raghavan and Madhusudhan, MS (2013) Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pK(a) of ionizable residues in proteins. In: Nucleic Acids Research, 41 (W1). W314-W321.

Tan, Kuan Pern and Varadarajan, Raghavan and Madhusudhan, MS (2011) DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. In: Nucleic Acids Research, 39 (2). W242-W248.

Tandi, M and Tripathi, N and Gaur, A and Gopal, B and Sundriyal, S (2022) Curation and cheminformatics analysis of a Ugi-reaction derived library (URDL) of synthetically tractable small molecules for virtual screening application. In: Molecular Diversity .

Tandon, H and Vishwanath, S and Srinivasan, N (2020) Structural and dynamical aspects of evolutionarily conserved protein-protein complexes. [Book Chapter]

Tandon, H and de Brevern, AG and Srinivasan, N (2021) Transient association between proteins elicits alteration of dynamics at sites far away from interfaces. In: Structure, 29 (4). 371-384.e3.

Tandon, Himani and Sharma, Arun and Sandhya, Sankaran and Srinivasan, Narayanaswamy and Singh, Ramandeep (2019) Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair. In: SCIENTIFIC REPORTS, 9 .

Tandon, Himani and Sharma, Arun and Wadhwa, Saruchi and Varadarajan, Raghavan and Singh, Ramandeep and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2019) Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (23). pp. 9048-9063.

Tawfik, Dan S and Varadarajan, Raghavan (2016) Editorial overview: Engineering and design. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 39 . V-VI.

Tedesco, Emilio and Harris, Kenneth DM and Johnston, Roy L and Turner, Giles W and Raja, Muruga Poopathi K and Balaram, Padmanabhan (2001) Ab initio structure determination of a peptide beta-turn from powder X-ray diffraction data. In: Chemical Communications (16). pp. 1460-1461.

Tendulkar, SR and Saikumari, YK and Patel, V and Raghotama, S and Munshi, TK and Balaram, P and Chattoo, BB (2007) Isolation, purification and characterization of an antifungal molecule produced by Bacillus licheniformis BC98, and its effect on phytopathogen Magnaporthe grisea. In: Journal of Applied Microbiology, 103 (6). pp. 2331-2339.

Thakur, Jitendra and Sanyal, Kaustuv (2012) A Coordinated Interdependent Protein Circuitry Stabilizes the Kinetochore Ensemble to Protect CENP-A in the Human Pathogenic Yeast Candida albicans. In: PLOS GENETICS, 8 (4). pp. 466-481.

Thakur, Krishan G and Gopal, B (2005) Crystallization and preliminary X-ray diffraction studies of two domains of a bilobed extra-cytoplasmic function sigma factor SigC from Mycobacterium tuberculosis. In: Acta Crystallographica Section F, 61 (Part 8). pp. 779-781.

Thakur, Krishan Gopal and Jaiswal, Ravi Kumar and Shukla, Jinal K and Praveena, T and Gopal, B (2010) Over-expression and purification strategies for recombinant multi-protein oligomers: A case study of Mycobacterium tuberculosis sigma/anti-sigma factor protein complexes. In: Protein Expression and Purification, 74 (2). pp. 223-230.

Thakur, Krishan Gopal and Joshi, Anagha Madhusudan and Gopal, B (2006) Structural and Biophysical Studies on Two Promoter Recognition Domains of the Extra-cytoplasmic Function \sigma Factor $\sigma ^C$ from Mycobacterium tuberculosis. In: Journal of Biological Chemistry, 282 (7). pp. 4711-4718.

Thakur, Krishan Gopal and Praveena, T and Gopal, B (2010) Mycobacterium tuberculosis Rv2704 is a member of the YjgF/YER057c/UK114 family. In: Proteins: Structure, Function, and Bioinformatics, 78 (3). pp. 773-778.

Thakur, Krishan Gopal and Praveena, T and Gopal, B (2010) Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslA. In: Journal of Molecular Biology, 397 (5). pp. 1199-1208.

Thakur, M and Mohan, D and Singh, AK and Agarwal, A and Gopal, B and Muniyappa, K (2021) Novel insights into ATP-Stimulated Cleavage of branched DNA and RNA Substrates through Structure-Guided Studies of the Holliday Junction Resolvase RuvX. In: Journal of Molecular Biology, 433 (13).

Thakur, SS and Deepalakshmi, PD and Gayathri, P and Banerjee, M and Murthy, MRN and Balaram, P (2009) Detection of the protein dimers, multiple monomeric states and hydrated forms of Plasmodium falciparum triosephosphate isomerase in the gas phase. In: Protein Engineering Design & Selection, 22 (5). pp. 289-304.

Thakur, Suman S and Balaram, Padmanabhan (2008) Fragmentation of Peptide Disulfides under Conditions of Negative Ion Mass Spectrometry: Studies of Oxidized Glutathione and Contryphan. In: Journal of the American Society for Mass Spectrometry, 19 (3). pp. 358-366.

Thakur, Suman S and Balaram, Padmanabhan (2007) Rapid mass spectral identification of contryphans. Detection of characteristic peptide ions by fragmentation of intact disulfide-bonded peptides in crude venom. In: Rapid Communications in Mass Spectrometry, 21 (21). pp. 3420-3426.

Thakur, Suman S and Ranganayaki, Rappal S and Gupta, Kallol and Balaram, Padmanabhan (2009) Identification of alpha- and beta-Hydroxy Acid Containing Cyclodepsipeptides in Natural Peptide Mixtures Using Negative Ion Mass Spectrometry. In: Journal of the American Society for Mass Spectrometry, 20 (12). pp. 2221-2228.

Thamotharan, S and Parthasarathi, V and Babu, Anandha G and Hunnur, Raveendra K and Badami, Bharati and Linden, Anthony (2005) 5-Phenoxymethyl-1,3,4-oxadiazole-2(3h)-thione. In: Acta Crystallographica Section E: Structure Reports Online, 61 (11). O3746-O3747.

Thamotharan, Subbiah and Karthikeyan, Tangavelou and Kulkarni, Kiran A and Shetty, Kartika N and Surolia, Avadhesha and Vijayan, Mamannamana and Suguna, Kaza (2011) Modification of the sugar specificity of a plant lectin: structural studies on a point mutant of Erythrina corallodendron lectin. In: Acta Crystallographica Section D, 67 (Part 3). pp. 218-227.

Thampan, Raghava Varman (1985) The Nuclear Binding of Estradiol Stimulates Ribonucleoprotein Transport in the Rat Uterus. In: Journal of Biological Chemistry, 260 (9). pp. 5420-5426.

Thangudu, Ratna R and Manoharan, Malini and Srinivasan, N and Cadet, Frederic and Sowdhamini, R and Offmann, Bernard (2008) Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. In: BMC Structural Biology, 8 .

Thangudu, Ratna R and Sharma, Priyanka and Srinivasan, N and Offmann, Bernard (2007) Analycys: A Database for Conservation and Conformation of Disulphide Bonds in Homologous Protein Domains. In: Proteins: Structure, Function, and Bioinformatics, 67 (2). pp. 255-261.

Thomas, CJ and Surolia, N and Surolia, A (1999) Combating endotoxic shock. In: Glycobiology, 9 (10). p. 1114.

Thomas, Celestine J and Anbazhagan, V and Ramakrishnan, M and Sultan, Nabil and Surolia, Ira and Swamy, Musti J (2003) Mechanism of Membrane Binding by the Bovine Seminal Plasma Protein, PDC-109: A Surface Plasmon Resonance Study. In: Biophysical Journal, 84 (5). pp. 3037-3044.

Thomas, Celestine J and Gangadhar, Beechanahalli P and Surolia, Namita and Surolia, Avadhesha (1998) Kinetics and mechanism of the recognition of endotoxin by polymyxin B. In: Journal of the American Chemical Society, 120 (48). pp. 12428-12434.

Thomas, Celestine J and Kapoor, Mili and Sharma, Shilpi and Bausinger, Huguette and Zyilan, Umit and Lipsker, Dan and Hanau, Daniel and Surolia, Avadhesha (2002) Evidence of a trimolecular complex involving LPS, LPS binding protein and soluble CD14 as an effector of LPS response. In: FEBS Letters, 531 (2). pp. 184-188.

Thomas, Celestine J and Sharma, Shilpi and Kumar, Gyanendra and Visweswariah, Sandhya S and Surolia, Avadhesha (2003) Biopanning of endotoxin-speciﬁc phage displayed peptides. In: Biochemical and Biophysical Research Communications, 307 (1). pp. 133-138.

Thomas, Celestine J and Surolia, Avadhesha (2000) Kinetic Analysis of the Binding of Ulex europeas Agglutinin 1 (UEA 1) to H-Antigenic Fucolipid. In: Archives of Biochemistry and Biophysics, 374 (1). pp. 8-12.

Thomas, Celestine J and Surolia, Avadhesha (2000) Mode of Molecular Recognition of L-Fucose by Fucose-Binding Legume Lectins. In: Biochemical and Biophysical Research Communications, 268 (2). pp. 262-267.

Thomas, Celestine J and Surolia, Namita and Surolia, Avadhesha (2001) Kinetic and Thermodynamic Analysis of the Interactions of 23-Residue Peptides with Endotoxin. In: The Journal of Biological Chemistry, 276 (38). pp. 35701-35706.

Thomas, Celestine J and Surolia, Namita and Surolia, Avadhesha (1999) Surface Plasmon Resonance Studies Resolve the Enigmatic Endotoxin Neutralizing Activity of Polymyxin B. In: The Journal of Biological Chemistry, 274 (42). pp. 29624-29627.

Thomas, MA and Rao, BNN and Balaram, P and Kumar, A (1984) Application of two-dimensional correlation spectroscopy for assignment of nmr-spectra of peptides. In: Current science, 53 (5). pp. 225-230.

Thomson, James and Ratnaparkhi, Girish S and Varadarajan, Raghavan and Sturtevant, Julian M and Richards, Frederic M (1994) Thermodynamic and structural consequences of changing a sulfur atom to a methylene group in the M13Nle mutation in ribonuclease-S. In: Biochemistry, 33 (28). pp. 8587-8593.

Tina, KG and Bhadra, R and Srinivasan, N (2007) PIC: Protein Interactions Calculator. In: Nucleic Acids Research, 35 (5). pp. 473-476.

Tiwari, JK and Adhikari, A and Sikdar, SK (1996) A large conductance Ca2+-activated K+ channel in alpha T3-1 pituitary gonadotrophs. In: Current Science (Bangalore), 70 (9). pp. 849-853.

Tiwari, JK and Sikdar, SK (1999) Temperature-dependent conformational changes in a voltage-gated potassium channel. In: European Biophysics Journal, 28 (4). pp. 338-345.

Tiwari, JK and Sikdar, SK (1998) Voltage gated Na+ channels contribute to membrane voltage fluctuation in \alpha T3-1 pituitary gonadotroph cells. In: Neuroscience Letters, 242 (3). pp. 167-171.

Tiwari, JK and Sikdar, SK (2000) The kinetics of a non-inactivating $K^+$ current in $\alpha T3-1$ pituitary gonadotropes is not affected by holding potential. In: Brain Research, 873 (2). pp. 218-224.

Tomar, Divya and Khan, Tarique and Singh, Rajiv Ranjan and Mishra, Satyendra and Gupta, Sarika and Surolia, Avadhesha and Salunke, Dinakar M. (2012) Crystallographic Study of Novel Transthyretin Ligands Exhibiting Negative-Cooperativity between Two Thyroxine Binding Sites. In: PLOS ONE, 7 (9).

Toniolo, C and Crisma, M and Valle, G and Bonora, GM and Polinelli, S and Becker, EL and Freer, RJ (1989) Conformationally restricted formyl methionyl tripeptide chemoattractants: a three-dimensional structure-activity study of analogs incorporating a C alpha,alpha-dialkylated glycine at position 2. In: Pept Res, 2 (4). pp. 275-281.

Toniolo, Claudio and Crisma, Marco and Formaggio, Fernando and Aleman, Carlos and Ramakrishnan, Chandrasekharan and Kalmankar, Neha and Balaram, Padmanabhan (2017) Intramolecular backbone center dot center dot center dot backbone hydrogen bonds in polypeptide conformations. The other way around: epsilon-turn. In: BIOPOLYMERS, 108 (1, SI).

Toniolo, Claudio and Crisma, Marco and Moretto, Alessandro and Peggion, Cristina and Formaggio, Fernando and Aleman, Carlos and Cativiela, Carlos and Ramakrishnan, Chandrasekharan and Balaram, Padmanabhan (2015) Peptide delta-Turn: Literature Survey and Recent Progress. In: CHEMISTRY-A EUROPEAN JOURNAL, 21 (40). pp. 13866-13877.

Tripathi, A and Swaroop, S and Varadarajan, R (2019) Molecular Determinants of Temperature-Sensitive Phenotypes. In: Biochemistry, 58 (13). pp. 1738-1750.

Tripathi, Arti and Dewan, Pooja C and Barua, Bipasha and Varadarajan, Raghavan (2012) Additional role for the ccd operon of F-plasmid as a transmissible persistence factor. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109 (31). pp. 12497-12502.

Tripathi, Arti and Dewan, Pooja C and Siddique, Shahbaz A and Varadarajan, Raghavan (2014) MazF-induced Growth Inhibition and Persister Generation in Escherichia coli. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 289 (7). pp. 4191-4205.

Tripathi, Arti and Gupta, Kritika and Khare, Shruti and Jain, Pankaj C and Patel, Siddharth and Kumar, Prasanth and Pulianmackal, Ajai J and Aghera, Nilesh and Varadarajan, Raghavan (2016) Molecular Determinants of Mutant Phenotypes, Inferred from Saturation Mutagenesis Data. In: MOLECULAR BIOLOGY AND EVOLUTION, 33 (11). pp. 2960-2975.

Tripathi, Arti and Varadarajan, Raghavan (2014) Residue specific contributions to stability and activity inferred from saturation mutagenesis and deep sequencing. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 24 . pp. 63-71.

Tripathi, J and Brahmachari, SK (1991) Distribution of simple repetitive (TG/CA)n and (CT/AG)n sequences in human and rodent genomes. In: Journal of Biomolecular Structure & Dynamics, 9 (2). pp. 387-397.

Tripathy, M and Iyer, SS and Srivastava, A (2018) Molecular Origin of Spatiotemporal Heterogeneity in Biomembranes With Coexisting Liquid Phases: Insights From Topological Rearrangements and Lipid Packing Defects. [Book Chapter]

Tripathy, M and Srivastava, A (2023) Lipid packing in biological membranes governs protein localization and membrane permeability. In: Biophysical Journal, 122 (13). pp. 2727-2743.

Tripathy, M and Srivastava, A and Sastry, S and Rao, M (2022) Protein as evolvable functionally constrained amorphous matter. In: Journal of Biosciences, 47 (4).

Tyagi, Nidhi and Anamika, Krishanpal and Srinivasan, Narayanaswamy (2010) A Framework for Classification of Prokaryotic Protein Kinases. In: PLos One, 5 (5).

Tyagi, M and Sharma, P and Swamy, CS and Cadet, F and Srinivasan, N and de Brevern, AG and Offmann, B (2006) Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. In: Nucleic Acids Research, 34 (Sp. Is). W119-W123.

Tyagi, M and de Brevern, AG and Srinivasan, N and Offmann, B (2008) Protein structure mining using a structural alphabet. In: Proteins: Structure, Function, and Bioinformatics, 71 (2). pp. 920-937.

Tyagi, Nidhi and Krishnadev, Oruganty and Srinivasan, Narayanaswamy (2009) Prediction of protein-protein interactions between Helicobacter pylori and a human host. In: Molecular BioSystems, 5 (12). pp. 1630-1635.

U

Udaya Lakshmi, K and Thamotharan, S and Ramamurthi, K and Varghese, B (2006) Supramolecular architecture of bis(melaminium) L-tartrate 2.5-hydrate. In: Acta Crystallographica Section E-Structure Reports Online, 62 (2). O455-O457.

Uma, K and Balaram, P (1989) Peptide Design - An Analysis Of Studies Using Alpha-Aminoisobutyric-Acid (Aib) And Z-Alpha,Beta Dehydrophenylalanine (Delta-Z-Phe). In: Indian Journal of Chemistry - Section B: Organic and Medicinal Chemistry, 28 (9). pp. 705-710.

Uma, K and Balaram, Hemalatha and Raghothama, S and Balaram, Padmanabhan (1988) Simultaneous observation of positive and negative nuclear Overhauser effects in oligopeptides due to segmental motio. In: Biochemical and Biophysical Research Communications, 151 (1). pp. 153-157.

Uma, K and Balaram, P and Kaur, Paramjeet and Kumar Sharma, Ashwani and Chauhan, VS (1989) Conformations of peptides containing Z-alpha,beta-dehydroleucine (delta ZLeu). A comparison of Boc-Pro-delta ZLeu-Gly-NHEt and Boc-Pro-delta ZPhe-Gly-NHEt. In: International Journal of Biological Macromolecules, 11 (3). pp. 169-171.

Uma, K and Chauhan, VS and Arun, Kumar and Balaram, Padmanabhan (1988) Conformations of dehydrophenylalanyl containing peptides. Nuclear Overhauser effect study of two acyclic. In: International Journal of Peptide and Protein Research, 31 (4). pp. 349-358.

Uma, K and Kishore, R and Balaram, P (1993) Stereochemical Constraints in Peptide Design: Analysis of the Influence of a Disulfide Bridge and an \alpha-Aminoisobutyryl Residue on the Conformation of a Hexapeptide. In: Biopolymers, 33 (6). pp. 865-871.

Uma, MV and Balaram, P and Sudha, R (2001) Spermidine as a potential biosynthetic precursor to the 1,5-diazabicyclo[4:3:0]nonene residue in the efrapeptins. In: Journal of Peptide Research, 58 (5). pp. 375-379.

Uma Reddy, B and Tandon, H and Pradhan, MK and Adhikesavan, H and Srinivasan, N and Das, S and Jayaraman, N (2020) Potent HCV NS3 Protease Inhibition by a Water-Soluble Phyllanthin Congener. In: ACS Omega, 5 (20). pp. 11553-11562.

Umashankar, M and Murthy, MRN and Singh, SA and Rao, Appu AG and Savithri, HS (2006) The role of inter-subunit ionic interactions in the sssembly of Physalis mottle tymovirus. In: Archives of Virology, 151 (10). pp. 1917-1931.

Umrao, S and Anusha, S and Jain, V and Chakraborty, B and Roy, R (2019) Smartphone-based kanamycin sensing with ratiometric FRET. In: RSC Advances, 9 (11). pp. 6143-6151.

Upadhyay, Santosh Kumar and Misr, Ashish and Srivastava, Richa and Surolia, Namita and Surolia, Avadhesha and Sundd, Monica (2009) Structural Insights into the acyl-intermediates of plasmodium falciparum fatty acid synthesis pathway; the mechanism of expansion of acyl carrier protein core. In: Journal of Biological Chemistry, 284 (34). pp. 22390-22400.

Upadhyay, Santosh Kumar and Misra, Ashish and Srivastava, Richa and Surolia, Namita and Surolia, Avadhesha (2009) Structural Insights into the Acyl Intermediates of the Plasmodium falciparum Fatty Acid Synthesis Pathway THE MECHANISM OF EXPANSION OF THE ACYL CARRIER PROTEIN CORE. In: Journal of Biological Chemistry, 284 (33). 22390 -22400.

Upadhyay, Santosh Kumar and Misra, Ashish and Surolia, Namita and Surolia, Avadhesha and Sundd, Monica (2010) Backbone chemical shift assignments of the acyl-acyl carrier protein intermediates of the fatty acid biosynthesis pathway of Plasmodium falciparum. In: Biomolecular NMR Assignments .

Upadhyay, Santosh Kumar and Misra, Ashish and Surolia, Namita and Surolia, Avadhesha and Sundd, Monica (2010) Erratum to: Backbone chemical shift assignments of the acyl-acyl carrier protein intermediates of the fatty acid biosynthesis pathway of Plasmodium falciparum. In: Biomolecular NMR Assignments, 4 (1). p. 87.

Uppal, MK and Ramasesha, S and Rao, CNR (1980) Computer simulation of polytypes. In: Acta Crystallographica Section A Crystal Physics, Diffraction, Theoretical and General Crystallography, 36 (3). pp. 356-361.

Usha, MS and Sanjay, MK and Gaddad, SM and Shivannavar, CT (2012) Study on degradation of H-acid by Alcaligenes latus isolated from textile industrial effluent. In: Journal of Scientific & Industrial Research (JSIR), 71 (3). pp. 235-240.

V

Vaigundan, D and Kalmankar, Neha V and Krishnappa, J and Gowda, Yellappa N and Kutty, AVM and Krishnaswamy, Patnam R (2014) A Novel Mutation in the Transglutaminase-1 Gene in an Autosomal Recessive Congenital Ichthyosis Patient. In: BIOMED RESEARCH INTERNATIONAL .

Vaigundan, D and Yuvaraj, I and Sunita, P and Sekar, K and Murthy, MRN and Krishnaswamy, PR (2022) Structural characterization of a putative recombinant L-amino acid oxidase from Leptospira interrogans. In: Current Science, 123 (7). pp. 895-906.

Vaishnav, MS and Kumari, N and Srikanta, S and Simha, V and Krishnaswamy, PR and Balaram, P and Bhat, N (2024) Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications. In: Metabolic Syndrome and Related Disorders, 22 (5). pp. 374-384.

Valkenburg, Sophie A and Mallajosyula, Vamsee Aditya V and Li, Olive TW and Chin, Alex WH and Carnell, George and Temperton, Nigel and Varadarajan, Raghavan and Poon, Leo LM (2016) Stalking influenza by vaccination with pre-fusion headless HA mini-stem. In: SCIENTIFIC REPORTS, 6 .

Valle, G and Crisma, M and Toniolo, C and Sudhanand, * and Sukumar, M and Balaram, P and Rao, R Balaji (1991) Stereochemistry of peptides containing 1-aminocycloheptane-1-carboxylic acid (Ac7c). In: International Journal of Peptide & Protein Research, 38 (6). pp. 511-518.

Valle, G and Bardi, R and Piazzesi, AM and Crisma, M and Toniolo, C and Cavicchioni, G and Uma, K and Balaram, P (1991) Crystal state conformation of three model monomer units for the beta-bend ribbon structure. In: Biopolymers, 31 (14). pp. 1669-1676.

Valle, G and Crisma, M and Toniolo, C and Rao, Sudhanand RB and Sukumar, M and Balaram, P (1991) Stereochemistry of peptides containing 1-aminocycloheptane-1-carboxylic acid (Ac-c). In: International Journal of Peptide & Protein Research, 38 (6). pp. 511-518.

Valle, Giovanni and Crisma, M and Toniolo, C and Balaji, Rao R and Prasad, Sudhanand and Balaram, Padmanabhan (1995) b-Turn conformations in crystal structures of model peptides containing a,a-di-n-propylglycine (Dpg) and a,a-di-n-butyl-glycine (Dbg). In: Biopolymers, 35 (01). pp. 1-9.

Valle, Giovanni and Crisma, Marco and Toniolo, Claudio and Sen, Nirupa and Sukumar, Muppalla and Balaram, Padmanabhan (1988) Crystallographic characterization of the conformation of the 1-aminocyclohexane-1-carboxylic acid residue in simple derivatives and peptides. In: Journal of the Chemical Society, Perkin Transactions 2 (3). pp. 393-398.

Varadarajan, Raghavan and Nagarajaram, HA and Ramakrishnan, C (1996) A procedure for the prediction of temperature-sensitive mutants of a globular protein based solely on the amino acid sequence. In: Proceedings of The National Academy of Sciences of The United States of America, 93 (24). pp. 13908-13913.

Varadarajan, Raghavan and Sharma, Deepak and Chakraborty, Kausik and Patel, Mayuri and Citron, Michael and Sinha, Prem and Yadav, Ramkishor and Rashid, Umar and Kennedy, Sarah and Eckert, Debra and Geleziunas, Romas and Bramhill, David and Schleif, William and Liang, Xiaoping and Shiver, John (2005) Characterization of gp120 and its Single-Chain Derivatives, $gp120-CD4_D_1_2$ and gp120-M9: Implications for Targeting the $CD4_i$ Epitope in Human Immunodeficiency Virus Vaccine Design. In: Journal of Virology, 79 (3). pp. 1713-1723.

Varadarajan, Sridhar (2004) Public peer review – An alternative to impact factors. In: Current Science, 87 (4). pp. 419-420.

Vardhan, Vishnu GP and Hema, M and Sushmitha, C and Savithri, HS and Natraj, Usha and Murthy, MRN (2019) Development of sesbania mosaic virus nanoparticles for imaging. In: ARCHIVES OF VIROLOGY, 164 (2). pp. 497-507.

Vardhan, Vishnu GP and Savithri, HS and Murthy, MRN and Hema, M (2016) Biodistribution and toxicity evaluation of sesbania mosaic virus nanoparticles in mice. In: ARCHIVES OF VIROLOGY, 161 (10). pp. 2673-2681.

Varghese, CN and Jaladeep, A and Sekhar, A (2024) Measuring Hydroxyl Exchange Rates in Glycans Using a Synergistic Combination of Saturation Transfer and Relaxation Dispersion NMR. In: Journal of the American Chemical Society, 146 (6). pp. 3825-3835.

Varkey, JT and Awasthi, Satish Kumar and Pillai, VNR (1999) Synthesis of two designed hairpin peptides on a newly developed 1,6-hexanediol diacrylate (HDODA)-crosslinked polystyrene resin. In: Protein and Peptide Letters, 6 (4). pp. 209-214.

Vartak, V Supriya and Lyer, Divyaanka and Santhoshkumar, T R and Sharma, Sheetal and Mishra, Archita and Goldsmith, Gunaseelan and Srivastava, Amrinal and Srivastava, Shikha and Karki, S Subhas and Surolia, Avadhesha and Choudhary, Bibha and Raghavan, S Sathees (2017) Novel BCL2 inhibitor, Disarib induces apoptosis by disruption of BCL2-BAK interaction. In: BIOCHEMICAL PHARMACOLOGY, 131 . pp. 16-28.

Vasantha, Basavalingappa and George, Gijo and Raghothama, Srinivasarao and Balaram, Padmanabhan (2017) Homooligomeric beta(3)(R)-valine peptides: transformation between C-14 and C-12 helical structures induced by a guest Aib residue. In: BIOPOLYMERS, 108 (1, SI).

Vasantha, Basavalingappa and Yamanappa, Hunashal and Raghothama, Srinivasarao and Balaram, Padmanabhan (2017) Conformational properties and aggregation of homo-oligomeric beta(3)(R)-valine peptides in organic solvents. In: BIOPOLYMERS, 108 (3).

Vasanthakumar, Ganga Ramu and Bhor, Vikrant M and Surolia, Avadhesha (2007) Hydrolysis of Cyclic Ureas under Microwave Irradiation: Synthesis and Characterization of 7,8-Diaminopelargonic Acid. In: Synthetic Communications, 36 (16). 2633 -2639.

Vaseeharan, B and Anand, Prem T and Murugan, T and Chen, JC (2006) Shrimp vaccination trials with the VP292 protein of white spot syndrome virus. In: Letters In Applied Microbiology, 43 (2). pp. 137-142.

Vasnik, S and Sikdar, SK (2020) Cholinergic receptorâ��independent modulation of intrinsic resonance in the rat subiculum neurons through inhibition of hyperpolarization-activated cyclic nucleotide-gated channels. In: Acta Physiologica . (In Press)

Vasudev, Prema G and Ananda, Kuppanna and Chatterjee, Sunanda and Aravinda, Subrayashastry and Shamala, Narayanaswamy and Balaram, Padmanabhan (2007) Hybrid peptide design. Hydrogen bonded conformations in peptides containing the stereochemically constrained gamma-amino acid residue, gabapentin. In: Journal of the American Chemical Society, 129 (13). pp. 4039-4048.

Vasudev, Prema G and Aravinda, Subrayashastry and Ananda, Kuppanna and Veena, Shettykere Dayananda and Nagarajan, Kuppuswamy and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Crystal Structures of a New Polymorphic Form of Gabapentin Monohydrate and the E and Z Isomers of 4-Tertiarybutylgabapentin. In: Chemical Biology & Drug Design, 73 (1). pp. 83-96.

Vasudev, Prema G and Banerjee, Mousumi and Ramakrishnan, C and Balaram, P (2012) Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins. In: Proteins: Structure, Function, and Genetics, 80 (4). pp. 991-1002.

Vasudev, Prema G and Chatterjee, Sunanda and Ananda, Kuppanna and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Hybrid \alpha\gamma Polypeptides: Structural Characterization of a $C_{12}/C_{10}$ Helix with Alternating Hydrogen-Bond Polarity. In: Angewandte Chemie International Edition, 47 (34). pp. 6430-6432.

Vasudev, Prema G and Chatterjee, Sunanda and Ramakrishnan, Chandrasekharan and Shamala, Narayanaswamy and Balaram, Padmanabhan (2009) Conformational Choices for the Stereochemically Constrained gamma-Amino Acid Residue Gabapentin: Theoretical Studies and Correlation With Experimental Results. In: Biopolymers, 92 (5). pp. 426-435.

Vasudev, Prema G and Chatterjee, Sunanda and Shamala, Narayanaswamy and Balaram, Padmanabhan (2009) Gabapentin: A Stereochemically Constrained gamma Amino Acid Residue in Hybrid Peptide Design. In: Accounts Of Chemical Research, 42 (10). pp. 1628-1639.

Vasudev, Prema G and Chatterjee, Sunanda and Shamala, Narayanaswamy and Balaram, Padmanabhan (2011) Structural Chemistry of Peptides Containing Backbone Expanded Amino Acid Residues: Conformational Features of beta, gamma, and Hybrid Peptides. In: Chemical Reviews, 111 (2). pp. 657-687.

Vasudev, Prema G and Narayanaswamy, Shamala and Balaram, Padmanabhan (2008) Nucleation, Growth, and Form in Crystals of Peptide Helices. In: Journal of Physical Chemistry B, 112 (4). pp. 1308-1314.

Vasudev, Prema G and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Conformations of \beta-Amino Acid Residues in Peptides: X-Ray Diffraction Studies of Peptides Containing the Achiral Residue 1-Aminocyclohexaneacetic Acid, $\beta^{3,3}Ac_6c$. In: Peptide Science, 90 (2). pp. 138-150.

Vasudev, Prema G and Rai, Rajkishor and Shamala, Narayanaswamy and Balaram, Padmanabhan (2008) Erratum: "Conformations of \beta -Amino Acid Residues in Peptides: X-Ray Diffraction Studies of Peptides Containing the Achiral Residue 1-Aminocyclohexaneacetic Acid, $\beta^{3.3}Ac_6c$". In: Biopolymers, 90 (4). pp. 581-582.

Vasudevan, TK and Ran, VSR (1982) Preferred conformations and flexibility of aminoacyl side chain of penicillins. In: International Journal of Biological Macromolecules, 4 (6). pp. 347-351.

Vasudevan, TK and Rao, VSR (1982) Conformational studies of phynyl and isoxazolyl penicillins. In: Current Science, 51 (8). pp. 402-406.

Vasudevan, TK and Rao, VSR (1981) Theoretical Studies on \beta -lactam Antibiotics. IV. Conformational Analysis of Novel \beta -lactam Antibiotics and the Binding Specificities of Crosslinking Enzyme(s) and \beta -lactamases. In: Biopolymers, 20 (5). pp. 865-877.

Vasudevan, TK and Rao, VSR (1982) Theoretical studies on penicillins, penicillin sulphones and their 1-oxa-1-dethia and 1-carba-1-dethia analogues: binding specificities of transeptidases and penicillinases. In: International Journal of Biological Macromolecules, 4 (4). pp. 219-226.

Vasudevaraju, Bharathi P and Govindaraju, M and Palanisamy, AP and Sambamurti, K and Rao, KSJ (2008) Molecular toxicity of aluminium in relation to neurodegeneration. In: Indian Journal of Medical Research, 128 (04). pp. 545-556.

Vats, Archana and Singh, Anil Kumar and Mukherjee, Raju and Chopra, Tarun and Ravindran, Madhu Sudhan and Mohanty, Debasisa and Chatterji, Dipankar and Reyrat, Jean-Marc and Gokhale, Rajesh S (2012) Retrobiosynthetic Approach Delineates the Biosynthetic Pathway and the Structure of the Acyl Chain of Mycobacterial Glycopeptidolipids. In: Journal of Biological Chemistry, 287 (36). pp. 30677-30687.

Veerabhadraswamy, P and Lata, K and Dey, S and Belekar, P and Kothegala, L and Mangala Prasad, V and Gandasi, NR (2024) Comparison of localization and release of multivesicular bodies and secretory granules in islet cells: Dysregulation during type-2 diabetes. In: Journal of Extracellular Biology, 3 (11).

Veerapandian, B and Salunke, DM and Vijayan, M (1984) 3,3',5,5'-Tetrabromophenolsulfonphthalein (bromphenol blue), C19H10Br4O5S. In: Acta Crystallographica Section C, 40 . pp. 500-502.

Veerapandian, B and Salunke, DM and Vijayan, M (1985) X-ray characterisation of an additional binding site in lysozyme. In: FEBS Letters, 186 (2). pp. 163-167.

Velankar, Sameer and Murthy, MRN (1994) Studies on molecular evolution and structural features of double-headed inhibitors of ?-amylase and trypsin in plants. In: Journal of Genetics, 73 (1). pp. 43-54.

Velanker, SS and Gokhale, RS and Ray, Soumya S and Gopal, B and Parthasarathy, S and Santi, DV and Balaram, P and Murthy, MRN (1999) Disulfide engineering at the dimer interface of Lactobacillus casei thymidylate synthase: crystal structure of the T155C/E188C/C244T mutant. In: Protein Science, 8 (4). pp. 930-933.

Velanker, Sameer S and Ray, Soumya S and Gokhale, Rajesh S and Suma, S and Balaram, Hemalatha and Balaram, P and Murthy, MRN (1997) Triosephosphate isomerase from Plasmodium falciparum: the crystal structure provides insights into antimalarial drug design. In: Structure, 5 (6). pp. 751-761.

Vellareddy, Anantharam and Patanjali, Sankhavaram R and Swam, Joginadha M and Sanadiq, Ashok R and Goldstein, Irwin J and Surolia, Avadhesha (1986) Isolation, Macromolecular Properties, and Combining Site of a Chitooligosaccharide-specific Lectin from the Exudate of Ridge Gourd(Luffaa cutangzda). In: Journal of Biological Chemistry, 261 (31). pp. 14621-14627.

Veluraja, K and Rao, VS R (1983) Theoretical Studies on the Conformation of Monosialogangliosides and Disialogangliosides. In: Carbohydrate Polymers, 3 (3). pp. 175-192.

Veluraja, K and Rao, VSR (1984) Studies on the conformations of sialyloligosaccharides and implications on the binding specificity of neuraminidases. In: Journal of Biosciences, 6 (5). pp. 625-634.

Veluraja, K and Rao, VSR (1980) Theoretical studies on the conformation of beta-D-N-acetyl neuraminic acid (sialic acid). In: Biochimica et Biophysica Acta (BBA) - General Subjects, 630 (3). pp. 442-446.

Veluraja, K and Rao, VSR (1984) Theoretical studies on the conformations of higher gangliosides. In: Carbohydrate Polymers, 4 ( 5). pp. 357-375.

Veluraja, K and Rao, VSR (1984) Theoretical studies on the conformations of higher gangliosides. In: Carbohydrate Polymers, 4 (5). pp. 357-375.

Vendra, Venkata Pulla Rao and Agarwal, Garima and Chandani, Sushil and Talla, Venu and Srinivasan, Narayanaswamy and Balasubramanian, Dorairajan (2013) Structural Integrity of the Greek Key Motif in beta gamma-Crystallins Is Vital for Central Eye Lens Transparency. In: PLOS ONE, 8 (8).

Venkatachalapath, YV and Prasad, B V Venkataram and Balaram, P (1982) Conformational analysis of small disulfide loops. Spectroscopic and theoretical studies on a synthetic cyclic tetrapeptide containing cystine. In: Biochemistry, 21 (22). pp. 5502-5509.

Venkatachalapathi, YV and Balaram, P (1981) Synthesis and conformational studies on beta-casomorphin - an opiate peptide from casein. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 136.

Venkatachalapathi, YV and Balaram, P (1981) Temperature Dependence of Peptide NH Chemical Shifts in Benzene: Delineation of Solvent-Shielded and Exposed Amide Protons. In: Biopolymers, 20 (3). pp. 625-628.

Venkatachalapathi, YV and Balaram, P (1981) X-Pro peptides: Synthesis and solution conformation of benzyloxycarbonyl-(Aib-Pro)4methyl ester. Evidence for a novel helical structure. In: Biopolymers, 20 (6). pp. 1137-1145.

Venkatachalapathi, YV and Balaram, P (1979) An incipient 310 helix in Piv-Pro-Pro-Ala-NHMe as a model for peptide folding. In: Nature, 281 (5726). pp. 83-84.

Venkatachalapathi, YV and Nair, CMK and Vijayan, M and Balaram, P (1981) X-Pro Peptides: Solution and Solid-state Conformation of $Benzyloxycarbonyl-{(Aib-Pro)}_2-methyl Ester$, a Type I \beta-Turn. In: Biopolymers, 20 (6). pp. 1123-1136.

Venkataram Prasad, BV and Balaram, Padmanabhan and Benedetti, Etlore (1984) The stereochemistry of a-aminoisobutyric acid containing peptides. In: Critical Reviews in Biochemistry and Molecular Biology, 16 (4). pp. 307-348.

Venkataraman, BV and Sasisekharan, V (1979) Conformation of Poly-(a-Aminoisobutyric Acid): A Modified a-Helix. In: Current Science (Bangalore), 48 (12). pp. 517-519.

Venkateswarlu, D and Lyngdoh, RHD and Bansal, M (1997) A semi-empirical SCF-MO study on the base-pairing properties of 8-oxopurines: Significance for mutagenicity. In: Journal Of The Chemical Society-Perkin Transactions 2 (3). pp. 621-626.

Venkateswarlu, Divi and Lyngdoh, Duncan RH (1997) Deglycosylation of alkylated nucleosides: a molecular orbital study. In: Journal of Molecular Structure (Theochem), 418 (1). pp. 49-57.

Venkateswarlu, Divi and Lyngdoh, Duncan RH (1997) Mutagenic significance of proton acidities in methylated guanine and thymine bases and deoxynucleosides: A theoretical study. In: Journal of Molecular Structure (Theochem), 393 . pp. 151-161.

Venkatraman, Janani and Aggarwal, Kamna and Balaram, P (2001) Helical peptide models for protein glycation: proximity effects in catalysis of the Amadori rearrangement. In: Chemistry & Biology, 8 (7). pp. 611-625.

Venkatraman, Janani and Gowda, Nagana GA and Balaram, Padmanabhan (2002) Design and Construction of an Open Multistranded ‚beta-Sheet Polypeptide Stabilized by a Disulfide Bridge. In: Journal of the American Chemical Society, 124 (18). pp. 4987-4994.

Venkatraman, Janani and Gowda, Nagana GA and Balaram, Padmanabhan (2002) Structural Analysis of Synthetic Peptide Fragments from EmrE, a Multidrug Resistance Protein, in a Membrane-Mimetic Environment. In: Biochemistry, 41 (21). pp. 6631-6639.

Venkatraman, Janani and Naganagowda, GA and Sudha, R and Balaram, Padmanabhan (2001) De novo design of a five-stranded beta-sheet anchoring a metal-ion binding site. In: Chemical Communications (24). pp. 2660-2661.

Venkatraman, Janani and Prabu, Moses M and Vijayan, M (1997) X-Ray Studies on Crystalline complexes involving Amino Acids and Peptides. XXXII. Effect of Chirality on ionisation state, Stoichiometry and aggregation in the complexes of Oxalic Acid with DL- and L-lysine. In: Journal of Peptide Research, 50 . pp. 77-87.

Venkatraman, Janani and Shankaramma, Sasalu C and Balaram, Padmanabhan (2001) Design of Folded Peptides. In: Chemical Reviews, 101 (10). pp. 3131-3152.

Verdaguer, Nuria and Ferrero, Diego and Murthy, Mathur RN (2014) Viruses and viral proteins. In: IUCRJ, 1 (6). pp. 492-504.

Verkhedkar, K and Raman, K and Chandra, Nagasuma R and Vishveshwara, Saraswathi (2007) Metabolome based reaction graphs of M.tuberculosis and M.leprae: A comparative network analysis. In: PLOS ONE, 2 (9).

Verma, M and Deshiraju, S and Jafri, M and Mehta, BK (2004) Lipid constituents from Centratherum anthelminticum (seeds). In: Indian Journal of Chemistry Sect. B: Organic Chemistry including Medicinal Chemistry, 43 (2). pp. 442-446.

Verma, Amit Kumar and Chatterji, Dipankar (2014) Dual role of MsRbpA: transcription activation and rescue of transcription from the inhibitory effect of rifampicin. In: MICROBIOLOGY-SGM, 160 (9). pp. 2018-2029.

Verma, Hitesh and Khatri, Bhavesh and Chakraborti, Sohini and Chatterjee, Jayanta (2018) Increasing the bioactive space of peptide macrocycles by thioamide substitution. In: CHEMICAL SCIENCE, 9 (9). pp. 2443-2451.

Vetrivel, Iyanar and Mahajan, Swapnil and Tyagi, Manoj and Hoffmann, Lionel and Sanejouand, Yves-Henri and Srinivasan, Narayanaswamy and de Brevern, Alexandre G and Cadet, Frederic and Offmann, Bernard (2017) Knowledge-based prediction of protein backbone conformation using a structural alphabet. In: PLOS ONE, 12 (11).

Vetrivel, Iyanar and de Brevern, Alexandre G and Cadet, Frederic and Srinivasan, Narayanaswamy and Offmann, Bernard (2019) Structural variations within proteins can be as large as variations observed across their homologues. In: BIOCHIMIE, 167 . pp. 162-170.

Vidhya, M (2023) P2Y12 receptor residues crucial for thrombosis regulation. In: Journal of Molecular Recognition, 36 (11).

Vijayabaskar, MS and Vishveshwara, Saraswathi (2010) Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks. In: BMC Bioinformatics, 11 (Suppl.).

Vijayabaskar, MS and Vishveshwara, Saraswathi (2012) Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks. In: PLOS COMPUTATIONAL BIOLOGY, 8 (5).

Vijayabaskar, MS and Vishveshwara, Saraswathi (2010) Interaction Energy Based Protein Structure Networks. In: Biophysical Journal, 99 (11). pp. 3704-3715.

Vijayabaskar, MS and Vishveshwara, Saraswathi and Sathyapriya, * (2006) A network model to explore protein-DNA interface properties. In: InCoB 2006 (International Conference on Bioinformatics-2006) New Delhi, Dec 2006, New Delhi.

Vijayachandra, K and Guruprasad, M and Bhandari, Rashna and Manjunath, UH and Somesh, BP and Srinivasan, N and Suguna, K and Visweswariah, Sandhya S (2000) Biochemical Characterization of the Intracellular Domain of the Human Guanylyl Cyclase C Receptor Provides Evidence for a Catalytically Active Homotrimer. In: Biochemistry, 39 (51). pp. 16075-16083.

Vijayachandra, K and Guruprasad, M and Bhandari, Rashna and Manjunath, UH and Somesh, BP and Srinivasan, N and Suguna, K and Visweswariah, Sandhya S (2000) Biochemical characterization of the intracellular domain of the human guanylyl cyclase C receptor provides evidence for a catalytically active homotrimer. In: Biochemistry, 39 (51). pp. 16075-16083.

Vijayakumar, EKS and Balaram, P (1984) Peptide models for the bacteriorhodopsin chromophore. Retinylidene-lysine systems containing aspartic acid and serine residues. In: Photochemistry and Photobiology, 39 (5). pp. 667-672.

Vijayakumar, EKS and Balaram, P (1983) Solution Conformations of Penta and Heptapeptides Containing Repetitive \alpha-Aminoisobutyryl-L-Alanyl and \alpha-Aminoisobutyryl-L-Valyl Sequences. In: Tetrahedron, 39 (16). pp. 2725-2731.

Vijayakumar, EKS and Balaram, P (1983) Solution conformations of penta and heptapeptides containing repetitive α-aminoisobutyryl-Image -alanyl and α -aminoisobutyryl-Image -valyl sequences. In: Tetrahedron, 39 (16). pp. 2725-2731.

Vijayakumar, EKS and Balaram, P (1983) Stereochemistry of \alpha-Aminoisobutyric Acid Peptides in Solution: Helical Conformations of Protected Decapeptides with Repeating Aib-L-Ala and Aib-L-Val Sequences. In: Biopolymers, 22 (9). pp. 2133-2140.

Vijayakumar, EKS and Sudha, TS and Balaram, P (1984) Circular Dichroism Studies of \alpha-Aminoisobutyric Acid-Containing Peptides: Chain Length and Solvent Effects in Alternating Aib-L-Ala and Aib-L-Val Sequences. In: Biopolymers, 23 (5). pp. 877-886.

Vijayakumar, S and Vishveshwara, S and Ravishanker, G and Beveridge, DL (1994) Analysis of Hydrogen Bonding and Stability of Protein Secondary Structures in Molecular Dynamics Simulation. In: Symposium on Modeling the Hydrogen Bond, at the 206th National Meeting of the American-Chemical-Society, AUG 22-27, 1993, Chicago,IL,.

Vijayakumar, S and Vishveshwara, S and Ravishanker, G and Beveridge, DL (1993) Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates. In: Biophysical Journal, 65 (6). pp. 2304-2312.

Vijayalakshmi, L and Krishna, R and Sankaranarayanan, R and Vijayan, M (2007) An asymmetric dimer of \beta-lactoglobulin in a low humidity crystal form - Structural changes that accompany partial dehydration and protein action. In: Proteins: Structure, Function and Bioinformatics, 71 (1). 241- 249.

Vijayalakshmi, S and Rao, Balaji R and Karle, IL and Balaram, P (2000) Comparison of Helix-Stabilizing Effects of \alpha, \alpha - Dialkyl Glycines with Linear and Cycloalkyl Side Chains. In: Biopolymers, 53 (1). pp. 84-98.

Vijayan, M (1997) Impact factors - A note of caution. In: Current Science, 73 (2). p. 101.

Vijayan, M (2000) International interactions in science - The Indian experience. In: Conference on Globalization and Development, JAN 14, 2000, Natl Inst Adv Studies Bangalore.

Vijayan, M and Suresh, CG (1985) Head-to-tail sequences and other patterns of peptide aggregation in the solid state. In: International Journal of Peptide & Protein Research, 26 (3). pp. 311-328.

Vijayan, M (2010) The Bhopal tragedy. In: Current Science (Bangalore), 99 (5). p. 557.

Vijayan, M (2016) Coping with disability - suggestions to institutions. In: CURRENT SCIENCE, 111 (4). p. 601.

Vijayan, M (2013) Form and Function of Proteins. Historical Background and the Indian Effort in Macromolecular Crystallography. In: NATIONAL ACADEMY SCIENCE LETTERS-INDIA, 36 (6). pp. 645-652.

Vijayan, M (1996) Form and Function:X-Ray in Structural Biology. In: Current Science, 70 (10). pp. 889-898.

Vijayan, M (2013) Guy Dodson (1937-2012). In: Current Science, 104 (4). pp. 535-536.

Vijayan, M (2009) INSA: new initiatives and concerns. In: Current Science, 96 (4). p. 451.

Vijayan, M (2013) THE LEGACY OF GN RAMACHANDRAN AND THE DEVELOPMENT OF STRUCTURAL BIOLOGY IN INDIA. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 1-16.

Vijayan, M (2001) M. A. Viswamitra: Crystallographer and structural biologist - An obituary. In: Current Science, 80 (9). pp. 1228-1229.

Vijayan, M (2014) Macromolecular Crystallography in India in the Global Context. In: JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE, 94 (1, SI). pp. 103-108.

Vijayan, M (2017) Making progress, but not rapidly. Comparison between India and China. In: Current Science, 112 (12). p. 2352.

Vijayan, M (2018) Molecular Biophysics Unit, Indian Institute of Science: the first thirty years (1971-2000). In: CURRENT SCIENCE, 115 (10). pp. 1980-1984.

Vijayan, M (1988) Molecular interactions and aggregation involving amino acids and peptides and their role in chemical evolution. In: Progress in Biophysics and Molecular Biology, 52 (2). pp. 71-99.

Vijayan, M (2018) National Institutional ranking and Institutions of eminence. In: Current Science, 115 (6). pp. 1031-1032.

Vijayan, M (2012) National priorities and the quest for scientific excellence. In: Current Science (Bangalore), 102 (3). pp. 377-378.

Vijayan, M (1980) On the Fourier refinement of protein structures. In: Acta Crystallographica Section A, A36 (2). pp. 295-298.

Vijayan, M (2007) Peanut lectin crystallography and macromolecular structural studies in India. In: Journal of Biosciences, 32 (6). pp. 1059-1066.

Vijayan, M (1980) Prebiotic evolution: an approach to polymerisation based on crystal structures. In: FEBS Letters, 112 (2). pp. 135-137.

Vijayan, M (2012) Research grants and finance officials. In: Current Science, 103 (5). p. 466.

Vijayan, M (2018) SERB and other sources of extramural support under the Ministry of Science and Technology. In: Current Science, 114 (9). pp. 1810-1811.

Vijayan, M (2004) Sivaraj Ramaseshan (1923 - 2003). In: Journal of Applied Crystallography, 37 (2). p. 351.

Vijayan, M (2005) Structural biology of mycobacterial proteins: The Bangalore effort. In: Tuberculosis, 85 (5&6). pp. 357-366.

Vijayan, M (2003) Structural genomics of microbial pathogens – An Indian programme. In: Current Science, 85 (7). pp. 878-885.

Vijayan, M (1983) Structure and interactions of aspirin-like drugs. In: Journal of Chemical Sciences, 92 (4-5). pp. 463-471.

Vijayan, M (2021) Structure of Indian science: a re-appraisal. In: Current Science, 121 (3). pp. 346-347.

Vijayan, M (2011) Structure of Indian science: autonomy, accountability and internal democracy. In: Current Science, 101 (5). pp. 605-606.

Vijayan, M (2011) Structure of Indian science: suggestions on operation of competitive grants. In: Current Science (Bangalore), 100 (6). pp. 815-816.

Vijayan, M (2015) Support for science. In: CURRENT SCIENCE, 108 (9). pp. 1575-1576.

Vijayan, M (2015) U. R. Ananthamurthy. In: CURRENT SCIENCE, 108 (1). p. 9.

Vijayan, M (2016) The legacy of G. N. Ramachandran and the development of structural biology in India. In: CURRENT SCIENCE, 110 (4). pp. 535-542.

Vijayan, M (2002) The story of insulin crystallography. In: Current Science, 83 (12). pp. 1598-1606.

Vijayan, M and Balaram, Padmanabhan and Francis, AK and Vijayakumar, EKS (1985) A helical peptide containing a majority of valyl residues. The crystal structure of t-butyloxy- carbonyl-(L-valyl-_-aminoisobutyryl)3-L-valyl methyl ester onohydrate. In: International Journal of Peptide and Protein Research, 26 (2). pp. 214-223.

Vijayan, M and Chandra, Nagasuma (1999) Lectins. In: Current Opinion in Structural Biology, 9 (6). pp. 707-714.

Vijayan, M and Salunke, Dinakar M (1984) Structural mobility and transformations in globular proteins. In: Journal of Biosciences, 6 (4). 357 -377.

Vijayan, M and Suresh, CG (1985) Chemical Evolution: An Approach Involving Molecular Interactions. In: Current Science, 54 (16). pp. 771-780.

Vijayan, V and Khandelwal, M and Manglani, K and Gupta, S and Surolia, A (2014) Methionine down-regulates TLR4/MyD88/NF-kappa B signalling in osteoclast precursors to reduce bone loss during osteoporosis. In: BRITISH JOURNAL OF PHARMACOLOGY, 171 (1). pp. 107-121.

Vijayan, Viji and Khandelwal, Mayuri and Manglani, Kapil and Singh, Rajiv Ranjan and Gupta, Sarika and Surolia, Avadhesha (2013) Homocysteine alters the osteoprotegerin/RANKL system in the osteoblast to promote bone loss: pivotal role of the redox regulator forkhead O1. In: FREE RADICAL BIOLOGY AND MEDICINE, 61 . pp. 72-84.

Vijayanathan, M and Vadakkepat, AK and Mahendran, KR and Sharaf, A and Frandsen, KEH and Bandyopadhyay, D and Pillai, MR and Soniya, EV (2024) Structural and mechanistic insights into Quinolone Synthase to address its functional promiscuity. In: Communications Biology, 7 (1).

Vijayasarathy, M and Balaram, P (2019) Cone snail prolyl-4-hydroxylase alpha-subunit sequences derived from transcriptomic data and mass spectrometric analysis of variable proline hydroxylation in C. amadis venom. In: JOURNAL OF PROTEOMICS, 194 . pp. 37-48.

Vijayasarathy, M and Balaram, P (2018) Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis. In: TOXICON, 144 . pp. 68-74.

Vijayasarathy, Marimuthu and Basheer, Soorej M and Balaram, Padmanabhan (2018) Cone Snail Glutaminyl Cyclase Sequences from Transcriptomic Analysis and Mass Spectrometric Characterization of Two Pyroglutamyl Conotoxins. In: JOURNAL OF PROTEOME RESEARCH, 17 (8). pp. 2695-2703.

Vijayasarathy, Marimuthu and Basheer, Soorej M and Franklin, Jayaseelan Benjamin and Balaram, Padmanabhan (2017) Contryphan Genes and Mature Peptides in the Venom of Nine Cone Snail Species by Transcriptomic and Mass Spectrometric Analysis. In: JOURNAL OF PROTEOME RESEARCH, 16 (2). pp. 763-772.

Vijayasarathy, S and Balaram, P (1982) Regional differentiation in bull sperm plasma-membranes. In: Biochemical and Biophysical Research Communications, 108 (2). pp. 760-769.

Vijayasarathy, S and Balaram, P (1982) Regional differentiationnext term in previous termbull sperm plasma membranesnext term. In: Biochemical and Biophysical Research Communications, 108 (2). pp. 760-769.

Vijayasarathy, S and Shivaji, S and Balaram, P (1982) Bull sperm plasma and acrosomal membranes: Fluorescence studies of lipid phase fluidity. In: Biochemical and Biophysical Research Communications, 108 (2). pp. 585-591.

Vijayasarathy, S and Shivaji, S and Balaram, P (1981) Changes In Hamster Sperm Membranes During Epididymal Transit. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 96.

Vijayasarathy, S and Shivaji, S and Balaram, P (1980) Plasma Membrane Bound ${Ca}^{2+}$-ATPase Activity in Bull Sperm. In: FEBS Letters, 114 (1). pp. 45-47.

Vijayasarathy, S and Shivaji, S and Iqbal, M and Balaram, P (1980) Formyl-Met-Leu-Phe Induces Chemotaxis and Acrosomal Enzyme Release in Bull Sperm. In: FEBS Letters, 115 (2). pp. 178-180.

Vijaykrishna, Nagampalli and Melangath, Geetha and Kumar, Rakesh and Khandelia, Piyush and Bawa, Pushpinder and Varadarajan, Raghavan and Vijayraghavan, Usha (2016) The Fission Yeast Pre-mRNA-processing Factor 18 (prp18(+)) Has Intron-specific Splicing Functions with Links to G(1)-S Cell Cycle Progression. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 291 (53). 27387+.

Vinayaka, CR and Rao, VSR (1987) A computer modelling approach to study the mode of binding of L-lyxoflavin-5'-monophosphate to flavodoxin. In: Journal of Biomolecular Structure & Dynamics, 4 (6). pp. 1095-1103.

Vinoth, N and Kalaiarasi, C and Lalitha, A (2024) Innovative and sustainable synthesis and structure of novel N-substituted hexahydroacridine derivatives. In: Journal of Physical Organic Chemistry .

Virudachalam, R and Joshi, NV and Rao, VSR (1979) Binding-specificity of peptidoglycan transpeptidase and beta-lactamase. In: Indian Journal of Biochemistry & Biophysics, 16 (1). p. 77.

Virudachalam, R and Rao, VSR (1978) Theoretical Studies on Peptidoglycans. I. Effect of L-Alanyl, D-Butyl, or D-Valyl Residues at the Positions 4 or 5 of the Pentapeptide Moiety of Peptidoglycan on the Cross-Linking Reaction. In: Biopolymers, 17 (9). pp. 2251-2263.

Virudachalam, R and Rao, VSR (1979) Theoretical Studies on Peptidoglycans. II. Conformations of the Disaccharide-Peptide Subunit and the Three-Dimensional Structure of Ptidoglycan. In: Biopolymers, 18 (3). pp. 571-589.

Virudachalam, Ramasamy and Rao, Vallurupalli SR (1976) Theoretical investigations on 2-acetamido-2-deoxy aldohexopyranoses: conformation and the anomeric effect. In: Advertisement Carbohydrate Research, 51 (1). pp. 135-139.

Vishveshwara, S and Brinda, KV (2005) Network topology of protein structures. In: Abstracts Of Papers Of The American Chemical Society, 229 (1). U794-U794.

Vishveshwara, S and Madhusudhana, MS and Maizel Jr, Jacob V (2001) Short-strong hydrogen bonds and a low barrier transition state for the proton transfer reaction in RNase A catalysis: a quantum chemical study. In: Biophysical Chemistry, 89 (2-3). pp. 105-117.

Vishveshwara, Saraswathi (1978) Ab-initio molecular orbital studies on C---H…X hydrogen bonded systemsstar. In: Chemical Physics Letters, 59 (1). pp. 26-29.

Vishveshwara, Saraswathi (2006) Structure Networks of amino acyl-tRNA Synthetases: Insights into amino acid and tRNA recognition. In: Third Indo-French Bioinformatics Meeting (IFBM 2006) Bangalore, June 12-14 2006, Bangalore.

Vishveshwara, Saraswathi and Dighe, Anasuya and Gadiyaram, Vasundhara (2019) Graph Spectral Properties of the Sidechain Networks of Protein Structures: Implications to Allostery and Structure Comparison. In: 63rd Annual Meeting of the Biophysical-Society, 2 - 6 March, 2019, Baltimore, MD, 463A-464A.

Vishveshwara, Saraswathi and Ghosh, Amit and Hansia, Priti (2009) Intra and Inter-Molecular Communications Through Protein Structure Network. In: Current Protein & Peptide Science, 10 (2). pp. 146-160.

Vishveshwara, Saraswathi and Jacob, Rebecca and Nadig, Gautham and Maizel Jr, Jacob V (1998) The role of lysine-41 in RNase A catalysis - A quantum chemical study on the active site ligand complex. In: Journal of Molecular Structure, 471 (1-3). 01-11.

Vishveshwara, Saraswathi and Rao, VSR (1981) Ab-initio studies of anomeric effect in thiosugars. In: Current Science (Bangalore), 50 (22). pp. 991-992.

Vishveshwara, Saraswathi and Rao, VSR (1982) Anomeric effect in sulfur-containing systems: An Ab-initio study. In: Carbohydrate Research, 104 (1). pp. 21-32.

Vishveshwara, Saraswathi (1978) Bond length distortions associated with torsion potentials; ab-initio studies on methanedio. In: Chemical Physics Letters, 59 (1). 30-32 .

Vishveshwara, Shobana S and Vishveshwara, Saraswathi (1993) Effect of constraints by threonine on proline containing αa-helix—A molecular dynamics approach. In: Biophysical Chemistry, 46 (1). pp. 77-89.

Vishwanath, CK and Easwaran, KRK (1985) 1H and 13C nuclear magnetic resonance studies on X-537A (lasalocid-A)-calcium complexes: observation of a sandwich complex. In: Perkin Transactions 2, 2 (1). pp. 65-68.

Vishwanath, CK and Easwaran, KRK (1982) Circular dichroism and nuclear magnetic resonance studies on the complexation of valinomycin with calcium. In: Biochemistry, 21 (11). pp. 2612-2621.

Vishwanath, CK and Easwaran, KRK (1983) Conformation of antibiotic X-537A (lasalocid-A) and its calcium complex in acetonitrile solvent using circular dichroism spectroscopy. In: FEBS Letters, 153 (2). pp. 320-324.

Vishwanath, CK and Easwaran, KRK (1981) Hydrogen- 1 and Carbon- 13 Magnetic Resonance Studies of Nonactin-Calcium Complex. In: Biochemistry, 20 (7). pp. 2018-2023.

Vishwanath, CK and Shamala, N and Easwaran, KRK and Vijayan, M (1983) Structure of Nonactin-Calcium Perchlorate, $C_{40}H_{64}O_{12}.Ca(ClO_{4})_{2}$, and a Comparative Study of Metal-Nonactin Complexes. In: Acta Crystallographica, Section C: Crystal Structure Communications, 39 (12). pp. 1640-1643.

Vishwanath, CK and Shamala, N and Easwaran, KRK and Vijayan, M (1983) Structure of nonactin-calcium perchlorate, C40H64O12.Ca(ClO4)2, and a comparative study of metal-nonactin complexes. In: Acta Crystallographica Section C :Crystal Structure Communications, 39 (12). pp. 1640-1643.

Vishwanath, Sneha and Banerjee, Sunaina and Jamithireddy, Anil K and Srinivasan, Narayanaswamy and Gopal, Balasubramanian and Chatterjee, Jayanta (2017) Design, Synthesis, and Experimental Validation of Peptide Ligands Targeting Mycobacterium tuberculosis sigma Factors. In: BIOCHEMISTRY, 56 (16). pp. 2209-2218.

Vishwanath, Sneha and Srinivasan, Narayanaswamy (2014) Chemical specificity and conformational flexibility in proteinase-inhibitor interaction: Scaffolds for promiscuous binding. In: PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 116 (2-3). pp. 151-157.

Vishwanath, Sneha and Sukhwal, Anshul and Sowdhamini, Ramanathan and Srinivasan, Narayanaswamy (2017) Specificity and stability of transient protein-protein interactions. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 44 . pp. 77-86.

Vishwanath, Sneha and de Brevern, Alexandre G and Srinivasan, Narayanaswamy (2018) Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. In: PLOS COMPUTATIONAL BIOLOGY, 14 (2).

W

Walia, Guneet and Gajendar, Komatireddy and Surolia, Avadhesha (2011) Identification of Critical Residues of the Mycobacterial Dephosphocoenzyme A Kinase by Site-Directed Mutagenesis. In: PLos One, 6 (1).

Walia, Guneet and Kumar, Parimal and Surolia, Avadhesha (2009) The Role of UPF0157 in the Folding of M-tuberculosis Dephosphocoenzyme A Kinase and the Regulation of the Latter by CTP. In: PLoS ONE, 4 (10).

Walia, Guneet and Surolia, Avadhesha (2011) Insights into the Regulatory Characteristics of the Mycobacterial Dephosphocoenzyme A Kinase: Implications for the Universal CoA Biosynthesis Pathway. In: PLos One, 6 (6).

Wani, S and Maharshi, N and Kothiwal, D and Mahendrawada, L and Kalaivani, R and Laloraya, S (2018) Interaction of the Saccharomyces cerevisiae RING-domain protein Nse1 with Nse3 and the Smc5/6 complex is required for chromosome replication and stability. In: Current Genetics, 64 (3). pp. 599-617.

Warghane, A and Petkar, T and Usha Preeyaa, S and Kumari, N and Ranjan, L (2021) In silico characterisation of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) based on the spike protein gene. In: Eurasian Journal of Medicine and Oncology, 5 (2). pp. 163-180.

Whaley, Kevin J and Sampatha, DS and Balaram, P (1984) Optically active gossypol as a circular dichroism probe of interactions with serum albumins. In: Biochimica et Biophysica Acta, 801 (1). pp. 127-130.

Williams, SM and Chatterji, D (2023) Dps Functions as a Key Player in Bacterial Iron Homeostasis. In: ACS Omega, 18 (38). pp. 34299-34309.

Williams, SM and Chatterji, D (2021) An Overview of Dps: Dual Acting Nanovehicles in Prokaryotes with DNA Binding and Ferroxidation Properties. [Book Chapter]

Williams, Sunanda Margrett and Chandran, Anu V and Vijayabaskar, Mahalingam S and Roy, Sourav and Balaram, Hemalatha and Vishveshwara, Saraswathi and Vijayan, Mamannamana and Chatterji, Dipankar (2014) A Histidine Aspartate Ionic Lock Gates the Iron Passage in Miniferritins from Mycobacterium smegmatis. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 289 (16). pp. 11042-11058.

Williams, Sunanda Margrett and Chandran, Anu Vijayakumari and Prakash, Sunita and Vijayan, Mamannamana and Chatterji, Dipankar (2017) A Mutation Directs the Structural Switch of DNA Binding Proteins under Starvation to a Ferritin-like Protein Cage. In: STRUCTURE, 25 (9). 1449+.

Williams, Sunanda Margrett and Chatterji, Dipankar (2017) Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. In: METALLOMICS, 9 (6). pp. 685-698.

Woodward, RB and Logusch, E and Nambiar, KP and Sakan, K and Ward, DE and Au-Yeung, BW and Balaram, P (1981) Asymmetric total synthesis of erythromycin. 1. Synthesis of an erythronolide A seco acid derivative via asymmetric induction. In: Journal of the American Chemical Society, 103 (11). pp. 3210-3213.

Woodward, RB and Logusch, E and Nambiar, KP and Sakan, K and Ward, DE and Au-Yeung, BW and Balaram, P (1981) Asymmetric total synthesis of erythromycin. 2. Synthesis of an erythronolide A lactone system. In: Journal of the American Chemical Society, 103 (11). pp. 3213-3215.

Woodward, RB and Logusch, E and Nambiar, KP and Sakan, K and Ward, DE and Au-Yeung, BW and Balaram, Padmanabhan (1981) Asymmetric total synthesis of erythromycin. 3. Total synthesis of erythromycin. In: Journal of the American Chemical Society, 103 (11). 3215 -3217.

X

Xavier, Janifer R and Gnanam, Ramaswamy and Murugan, Muthiah P and Pappachan, Anju (2012) Clonal propagation of Phyllanthus amarus: A hepatoprotector. In: Pharmacognosy Magazine, 8 (29). pp. 78-82.

Y

Yadav, S and Dwivedi, VK and Gupta, S and Surolia, A (2019) Benzothiophenes as potent analgesics against neuropathic pain. [Book Chapter]

Yadav, Saurabh and Surolia, Avadhesha (2019) Lysozyme elicits pain during nerve injury by neuronal Toll-like receptor 4 activation and has therapeutic potential in neuropathic pain. In: SCIENCE TRANSLATIONAL MEDICINE, 11 (504).

Yamamoto, Kaneyoshi and Yamanaka, Yuki and Shimada, Tomohiro and Sarkar, Paramita and Yoshida, Myu and Bhardwaj, Neerupma and Watanabe, Hiroki and Taira, Yuki and Chatterji, Dipankar and Ishihama, Akira (2018) Altered Distribution of RNA Polymerase Lacking the Omega Subunit within the Prophages along the Escherichia coli K-12 Genome. In: MSYSTEMS, 3 (1).

Yarava, Jayasubba Reddy and Sonti, Rajesh and Kantharaju, K and Raghothama, S and Ramanathan, K V (2017) Solid-state NMR at natural isotopic abundance for the determination of conformational polymorphism - the case of designed beta-turn peptides containing di-prolines. In: CHEMICAL COMMUNICATIONS, 53 (7). pp. 1317-1320.

Yathindra, N and Rao, VSR (1973) Configurational Statistics Of Polysaccharides .7. Unperturbed Dimensions Of (1,3) Glucans. In: Current Science(Bangalore), 42 (23). pp. 809-811.

Yazhini, A (2018) Small Open Reading Frames: Tiny Treasures of the Non-coding Genomic Regions. In: Resonance, 23 (1). pp. 57-67.

Yazhini, A and Chakraborti, S and Srinivasan, N (2021) Protein Structure, Dynamics and Assembly: Implications for Drug Discovery. [Book Chapter]

Yazhini, A and Sandhya, S and Srinivasan, N (2021) Rewards of divergence in sequences, 3-D structures and dynamics of yeast and human spliceosome SF3b complexes. In: Current Research in Structural Biology, 3 . pp. 133-145.

Yazhini, A and Srinivasan, N (2020) How good are comparative models in the understanding of protein dynamics? In: Proteins: Structure, Function and Bioinformatics, 88 (7). pp. 874-888.

Yazhini, A and Srinivasan, N and Sandhya, S (2022) Sequence Divergence and Functional Specializations of the Ancient Spliceosomal SF3b: Implications in Flexibility and Adaptations of the Multi-Protein Complex. In: Frontiers in Genetics, 12 .

Yazhini, A and Srinivasan, N and Sandhya, S (2021) Signatures of conserved and unique molecular features in Afrotheria. In: Scientific Reports, 11 (1).

Yelamanchi, SD and Arun Kumar, ST and Mishra, A and Keshava Prasad, TS and Surolia, A (2022) Metabolite Dysregulation by Pranlukast in Mycobacterium tuberculosis. In: Molecules, 27 (5).

Yelamanchi, SD and Mishra, A and Behra, SK and Karthikkeyan, G and Prasad, TSK and Surolia, A (2022) Rifampicin-Mediated Metabolic Changes in Mycobacterium tuberculosis. In: Metabolites, 12 (6).

Yelamanchi, SD and Surolia, A (2021) Targeting amino acid metabolism of Mycobacterium tuberculosis for developing inhibitors to curtail its survival. In: IUBMB Life .

Yella, VR and Bhimsaria, D and Ghoshdastidar, D and RodrÃguez-MartÃnez, JA and Ansari, AZ and Bansal, M (2018) Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif. In: Nucleic Acids Research, 46 (22). pp. 11883-11897.

Yella, Venkata Rajesh and Bansal, Manju (2013) DNA STRUCTURAL FEATURES AND ARCHITECTURE OF PROMOTER REGIONS PLAY A ROLE IN GENE RESPONSIVENESS OF S. CEREVISIAE. In: JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 11 (6, SI).

Yella, Venkata Rajesh and Bansal, Manju (2017) DNA structural features of eukaryotic TATA-containing and TATA-less promoters. In: FEBS OPEN BIO, 7 (3). pp. 324-334.

Yella, Venkata Rajesh and Kumar, Aditya and Bansal, Manju (2018) Identification of putative promoters in 48 eukaryotic genomes on the basis of DNA free energy. In: SCIENTIFIC REPORTS, 8 .

Yogavel, M and Rajakannan, V and Krishna, R and Velmurugan, D and Raghukumar, V (2003) 5-Amino 4-(4-dimethylaminophenyl)-2-(4methoxyphenyl)-7-(pyrrolidin-1-yl)- 1,6-naphthyridine-8-carbonitrile. In: Acta Crystallographica Section E:Structure Reports Online, 59 (2). 0200-0202.

Yu, Bao-Zhu and Rogers, Joseph and Nicol, Gordon R and Theopold, Klaus H and Seshadri, K and Vishweshwara, S and Jain, Mahendra Kumar (1998) Catalytic significance of the specificity of divalent cations as Ks* and k(cat)* cofactors for secreted phospholipase A(2). In: Biochemistry, 37 (36). pp. 12576-12587.

Yuwen, Tairan and Sekhar, Ashok and Baldwin, Andrew J and Vallurupalli, Pramodh and Kay, Lewis E (2018) Measuring Diffusion Constants of Invisible Protein Conformers by Triple-Quantum H-1 CPMG Relaxation Dispersion. In: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 57 (51). pp. 16777-16780.

Z

Zacharia, A and Pal, RR and Katsowich, N and Mannully, CT and Ibrahim, A and Alfandary, S and Serruya, R and Baidya, AK and Ben-Yehuda, S and Rosenshine, I and Moussaieff, A (2022) Activation of the Type III Secretion System of Enteropathogenic Escherichia coli Leads to Remodeling of Its Membrane Composition and Function. In: mSystems, 7 (3).

Zhao, Chunxia and Polavarapu, Prasad L and Das, Chittaranjan and Balaram, P (2000) Vibrational Circular Dichroism of beta-Hairpin Peptides. In: Journal of the American Chemical Society, 122 (34). pp. 8228-8231.

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