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Items where Subject is "Centre for Infectious Disease Research"

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Ahmed, A and Rakshit, S and Adiga, V and Dias, M and Dwarkanath, P and D�Souza, G and Vyakarnam, A (2021) A century of BCG: Impact on tuberculosis control and beyond*. In: Immunological Reviews, 301 (1). pp. 98-121.

Ahmed, A and Rakshit, S and Vyakarnam, A (2016) HIV-TB co-infection: mechanisms that drive reactivation of Mycobacterium tuberculosis in HIV infection. In: 7th World Workshop on Oral Health and Disease in AIDS, NOV 06-09, 2014, Hyderabad, INDIA, pp. 53-60.

Ahmed, A and Tripathi, H and van Meijgaarden, KE and Kumar, NC and Adiga, V and Rakshit, S and Parthiban, C and Eveline J, S and D'Souza, G and Dias, M and Ottenhoff, THM and Netea, MG and Joosten, SA and Vyakarnam, A (2023) BCG revaccination in adults enhances pro-inflammatory markers of trained immunity along with anti-inflammatory pathways. In: iScience, 26 (10).

Ahmed, A and Vyakarnam, A (2020) Emerging patterns of regulatory T cell function in tuberculosis. In: Clinical and Experimental Immunology .

Ahmed, Asma and Adiga, Vasista and Nayak, Soumya and Kumar, J Anto Jesuraj Uday and Dhar, Chirag and Sahoo, Pravat Nalini and Sundararaj, Bharath K and Souza, George D and Vyakarnam, Annapurna (2018) Circulating HLA-DR(+)CD4(+) effector memory T cells resistant to CCR5 and PD-L1 mediated suppression compromise regulatory T cell function in tuberculosis. In: PLOS PATHOGENS, 14 (9).

Ahmed, S and Khan, MS and Gayathri, S and Singh, R and Kumar, S and Patel, UR and Malladi, SK and Rajmani, RS and van Vuren, PJ and Riddell, S and Goldie, S and Girish, N and Reddy, P and Upadhyaya, A and Pandey, S and Siddiqui, S and Tyagi, A and Jha, S and Pandey, R and Khatun, O and Narayan, R and Tripathi, S and McAuley, AJ and Singanallur, NB and Vasan, SS and Ringe, RP and Varadarajan, R (2021) A Stabilized, Monomeric, Receptor Binding Domain Elicits High-Titer Neutralizing Antibodies Against All SARS-CoV-2 Variants of Concern. In: Frontiers in Immunology, 12 .

Alampalli, Shuba Varshini and Thomson, Michael M and Sampathkumar, Raghavan and Sivaraman, Karthi and Jesuraj, Anto UKJ and Dhar, Chirag and Souza, George D and Berry, Neil and Vyakarnam, Annapurna (2017) Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India. In: PLOS ONE, 12 (12).

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe�4S cluster and regulates Fe�S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe–4S cluster and regulates Fe–S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Arunachalam, Ramaiah (2014) Adaptive evolution of a novel avian-origin influenza A/H7N9 virus. In: GENOMICS, 104 (6, B). pp. 545-553.

Athreya, S and Babu, GR and Iyer, A and Mohammed Minhaas, BS and Rathod, N and Shriram, S and Sundaresan, R and Vaidhiyan, NK and Yasodharan, S (2021) COVID-19: Optimal Design of Serosurveys for Disease Burden Estimation. In: Sankhya B .


Balakrishnan, Arjun and Marathe, Sandhya A and Joglekar, Madhura and Chakravortty, Dipshikha (2013) Bactericidal/permeability increasing protein: A multifaceted protein with functions beyond LPS neutralization. In: INNATE IMMUNITY, 19 (4). pp. 339-347.

Bandyopadhyay, P and Pramanick, I and Biswas, R and Sabarinath, PS and Sreedharan, S and Singh, S and Rajmani, RS and Laxman, S and Dutta, S and Singh, A (2022) S-Adenosylmethionine–responsive cystathionine β-synthase modulates sulfur metabolism and redox balance in Mycobacterium tuberculosis. In: Science Advances, 8 (25).

Banerjee, U and Baloni, P and Singh, A and Chandra, N (2021) Immune Subtyping in Latent Tuberculosis. In: Frontiers in Immunology, 12 .

Banerjee, U and Chunchanur, S and R, A and Balaji, KN and Singh, A and Chakravortty, D and Chandra, N (2023) Systems-level profiling of early peripheral host-response landscape variations across COVID-19 severity states in an Indian cohort. In: Genes and Immunity .

Banerjee, U and Sankar, S and Singh, A and Chandra, N (2020) A Multi-Pronged Computational Pipeline for Prioritizing Drug Target Strategies for Latent Tuberculosis. In: Frontiers in Chemistry, 8 .

Bhatt, B and Prakhar, P and Lohia, GK and Rajmani, RS and Balaji, KN (2022) Pre-existing mycobacterial infection modulates Candida albicans-driven pyroptosis. In: FEBS Journal, 289 (6). 1536 -1551.

Biji, A and Khatun, O and Swaraj, S and Narayan, R and Rajmani, RS and Sardar, R and Satish, D and Mehta, S and Bindhu, H and Jeevan, M and Saini, DK and Singh, A and Gupta, D and Tripathi, S (2021) Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples. In: EBioMedicine, 70 .

Borbora, SM and Rajmani, RS and Balaji, KN (2022) PRMT5 epigenetically regulates the E3 ubiquitin ligase ITCH to influence lipid accumulation during mycobacterial infection. In: PLoS Pathogens, 18 (6).


Das, M and Dewan, A and Shee, S and Singh, A (2021) The multifaceted bacterial cysteine desulfurases: From metabolism to pathogenesis. In: Antioxidants, 10 (7).

Dave, Pratik and George, Biju and Balakrishnan, Sreenath and Sharma, Divya Khandige and Raheja, Harsha and Dixit, Narendra M and Das, Saumitra (2019) Strand-specific affinity of host factor hnRNP C1/C2 guides positive to negative-strand ratio in Coxsackievirus B3 infection. In: RNA BIOLOGY, 16 (9). pp. 1286-1299.

Dave, Pratik and George, Biju and Raheja, Harsha and Rani, Priya and Behera, Padmanava and Das, Saumitra (2019) The mammalian host protein DAP5 facilitates the initial round of translation of Coxsackievirus B3 RNA. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (42). pp. 15386-15394.

Deobagkar-Lele, Mukta and Victor, Emmanuel S and Nandi, c (2014) c-Jun NH2-terminal kinase is a critical node in the death of CD4(+)CD8(+) thymocytes during Salmonella enterica serovar Typhimurium infection. In: EUROPEAN JOURNAL OF IMMUNOLOGY, 44 (1). pp. 137-149.

Desingu, P.A. and Mishra, S. and Dindi, L. and Srinivasan, S. and Rajmani, R.S. and Ravi, V. and Tamta, A.K. and Raghu, S. and Murugasamy, K. and Pandit, A.S. and Sundaresan, N.R. (2023) PARP1 inhibition protects mice against Japanese encephalitis virus infection. In: Cell Reports, 42 (9).

Dey, A and Anand, K and Singh, A and Prasad, R and Barthwal, R (2023) Binding-induced thermal stabilization of mosR and ndhA G-quadruplex comprising genes by emodin leads to downregulation and growth inhibition in Mtb: Potential as anti-tuberculosis drug. In: Results in Chemistry, 6 .

Dey, A and Anand, K and Singh, A and Prasad, R and Barthwal, R (2023) MOSR and NDHA Genes Comprising G-Quadruplex as Promising Therapeutic Targets against Mycobacterium tuberculosis: Molecular Recognition by Mitoxantrone Suppresses Replication and Gene Regulation. In: Genes, 14 (5).

Dos Anjos Borges, LG and Pisanelli, G and Khatun, O and García-Sastre, A and Tripathi, S (2020) Live Visualization of Hemagglutinin Dynamics during Infection by Using a Novel Reporter Influenza A Virus. In: Viruses, 12 (6).


Fernandes, SE and Alakesh, A and Rajmani, RS and Jhunjhunwala, S and Saini, DK (2021) Aging associated altered response to intracellular bacterial infections and its implication on the host. In: Biochimica et Biophysica Acta - Molecular Cell Research, 1868 (9).


Harikrishnan, NB and Pranay, SY and Nagaraj, N (2022) Classification of SARS-CoV-2 viral genome sequences using Neurochaos Learning. In: Medical and Biological Engineering and Computing, 60 (8). pp. 2245-2255.

Hickman, Oliver J and Smith, Richard A and Dasgupta, Prokar and Rao, Sudha Narayana and Nayak, Soumya and Sreenivasan, Shubha and Vyakarnam, Annapurna and Galustian, Christine (2016) Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2. In: BRITISH JOURNAL OF CANCER, 114 (11). pp. 1235-1242.


Irudayam, Joseph Ignatius and Contreras, Deisy and Spurka, Lindsay and Subramanian, Aparna and Allen, Jenieke and Ren, Songyang and Kanagavel, Vidhya and Nguyen, Quoclinh and Ramaiah, Arunachalam and Ramamoorthy, Kalidas and French, Samuel W and Klein, Andrew S and Funari, Vincent and Arumugaswami, Vaithilingaraja (2015) Characterization of type I interferon pathway during hepatic differentiation of human pluripotent stem cells and hepatitis C virus infection. In: STEM CELL RESEARCH, 15 (2). pp. 354-364.


Kanojia, A and Sharma, M and Shiraz, R and Tripathi, S (2022) Flavivirus–Host Interaction Landscape Visualized through Genome-Wide CRISPR Screens. In: Viruses, 14 (10).

Khatun, O and Sharma, M and Narayan, R and Tripathi, S (2023) SARS-CoV-2 ORF6 protein targets TRIM25 for proteasomal degradation to diminish K63-linked RIG-I ubiquitination and type-I interferon induction. In: Cellular and Molecular Life Sciences, 80 (12).

Krishnan, S and Nordqvist, H and Ambikan, AT and Gupta, S and Sperk, M and Svensson-Akusjärvi, S and Mikaeloff, F and Benfeitas, R and Saccon, E and Ponnan, SM and Rodriguez, JE and Nikouyan, N and Odeh, A and Ahlén, G and Asghar, M and Sällberg, M and Vesterbacka, J and Nowak, P and Végvári, � and Sönnerborg, A and Treutiger, CJ and Neogi, U (2021) Metabolic perturbation associated with COVID-19 disease severity and SARS-CoV-2 replication. In: Molecular and Cellular Proteomics, 20 .

Kumar, S and Gopinathan, R and Chandra, GK and Umapathy, S and Saini, DK (2020) Rapid detection of bacterial infection and viability assessment with high specificity and sensitivity using Raman microspectroscopy. In: Analytical and Bioanalytical Chemistry, 412 (11). pp. 2505-2516.

Kumara, HN and Babu, S and Rao, GB and Mahato, S and Bhattacharya, M and Rao, NVR and Tamiliniyan, D and Parengal, H and Deepak, D and Balakrishnan, A and Bilaskar, M (2022) Responses of birds and mammals to long-established wind farms in India. In: Scientific Reports, 12 (1).


Lachmann, Raskit and Bevan, Margaret A and Kim, Sangmi and Patel, Nishma and Hawrylowicz, Catherine and Vyakarnam, Annapurna and Peters, Barry S (2015) A comparative phase 1 clinical trial to identify anti-infective mechanisms of vitamin D in people with HIV infection. In: AIDS, 29 (10). pp. 1127-1135.

Libardo, Mark Daben Javate and Anand, Kushi and Krishnamoorthy, Gopinath and Kaufmann, Stefan H E and Singh, Amit and Angeles-Boza, Alfredo (2017) Phagosomal Copper Triggers a Peptidomimetic's Oxidative Activity and Enables Eradication of Intracellular Mycobacterium tuberculosis. In: FASEB JOURNAL, 31 (1).

Lin, QXX and Rajagopalan, D and Gamage, AM and Tan, LM and Venkatesh, PN and Chan, WOY and Kumar, D and Agrawal, R and Chen, Y and Fong, S-W and Singh, A and Sun, LJ and Tan, S-Y and Chai, LYA and Somani, J and Lee, B and Renia, L and Ng, LFP and Ramanathan, K and Wang, L-F and Young, B and Lye, D and Singhal, A and Prabhakar, S (2024) Longitudinal single cell atlas identifies complex temporal relationship between type I interferon response and COVID-19 severity. In: Nature Communications, 15 (1).


Mahadik, Kasturi and Prakhar, Praveen and Rajmani, R S and Singh, Amit and Balaji, Kithiganahalli Narayanaswamy (2018) c-Abl-TWIST1 Epigenetically Dysregulate Inflammatory Responses during Mycobacterial Infection by Co-Regulating Bone Morphogenesis Protein and miR27a. In: FRONTIERS IN IMMUNOLOGY, 9 .

Majumdar, Shamik and Adiga, Vasista and Raghavan, Abinaya and Rananaware, Supriya Rajendra and Nandi, Dipankar (2019) Comparative analysis of thymic subpopulations during different modes of atrophy identifies the reactive oxygen species scavenger, N-acetyl cysteine, to increase the survival of thymocytes during infection-induced and lipopolysaccharide-induced thymic atrophy. In: IMMUNOLOGY, 157 (1). pp. 21-36.

Malladi, SK and Patel, UR and Rajmani, RS and Singh, R and Pandey, S and Kumar, S and Khaleeq, S and Van Vuren, PJ and Riddell, S and Goldie, S and Gayathri, S and Chakraborty, D and Kalita, P and Pramanick, I and Agarwal, N and Reddy, P and Girish, N and Upadhyaya, A and Khan, MS and Kanjo, K and Bhat, M and Mani, S and Bhattacharyya, S and Siddiqui, S and Tyagi, A and Jha, S and Pandey, R and Tripathi, S and Dutta, S and McAuley, AJ and Singanallur, NB and Vasan, SS and Ringe, RP and Varadarajan, R (2021) Immunogenicity and Protective Efficacy of a Highly Thermotolerant, Trimeric SARS-CoV-2 Receptor Binding Domain Derivative. In: ACS Infectious Diseases .

Manjunatha, Roopa G and Rajanna, K and Mahapatra, DRoy and Prakash, Surya (2014) Evaluation of polyvinylidene fluoride nasal sensor to assess deviated nasal septum in comparision with peak nasal inspiratory flow measurements. In: AMERICAN JOURNAL OF RHINOLOGY & ALLERGY, 28 (1). E62-E67.

Manoj, Kelath Murali and Parashar, Abhinav and Venkatachalam, Avanthika and Goyal, Sahil and Satyalipsu, * and Singh, Preeti Gunjan and Gade, Sudeep K and Periyasami, Kalaiselvi and Jacob, Reeba Susan and Sardar, Debosmita and Singh, Shanikant and Kumar, Rajan and Gideon, Daniel A (2016) Atypical profiles and modulations of heme-enzymes catalyzed outcomes by low amounts of diverse additives suggest diffusible radicals' obligatory involvement in such redox reactions. In: BIOCHIMIE, 125 . pp. 91-111.

Martin-Sancho, L and Tripathi, S and Rodriguez-Frandsen, A and Pache, L and Sanchez-Aparicio, M and McGregor, MJ and Haas, KM and Swaney, DL and Nguyen, TT and Mamede, JI and Churas, C and Pratt, D and Rosenthal, SB and Riva, L and Nguyen, C and Beltran-Raygoza, N and Soonthornvacharin, S and Wang, G and Jimenez-Morales, D and De Jesus, PD and Moulton, HM and Stein, DA and Chang, MW and Benner, C and Ideker, T and Albrecht, RA and Hultquist, JF and Krogan, NJ and García-Sastre, A and Chanda, SK (2021) Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. In: Nature Microbiology, 6 (10). pp. 1319-1333.

Mishra, R and Yadav, V and Guha, M and Singh, A (2020) Heterogeneous Host�Pathogen Encounters Coordinate Antibiotic Resilience in Mycobacterium tuberculosis. In: Trends in Microbiology . (In Press)

Mishra, R and Yadav, V and Guha, M and Singh, A (2021) Heterogeneous Host–Pathogen Encounters Coordinate Antibiotic Resilience in Mycobacterium tuberculosis. In: Trends in Microbiology, 29 (7). pp. 606-620.

Mishra, Richa and Kohli, Sakshi and Malhotra, Nitish and Bandyopadhyay, Parijat and Mehta, Mansi and Munshi, MohamedHusen and Adiga, Vasista and Ahuja, Vijay Kamal and Shandil, Radha K and Rajmani, Raju S and Seshasayee, Aswin Sai Narain and Singh, Amit (2019) Targeting redox heterogeneity to counteract drug tolerance in replicating Mycobacterium tuberculosis. In: SCIENCE TRANSLATIONAL MEDICINE, 11 (518).

Mukherjee, T and Bhatt, B and Prakhar, P and Lohia, GK and Rajmani, RS and Balaji, KN (2021) Epigenetic reader BRD4 supports mycobacterial pathogenesis by co-modulating host lipophagy and angiogenesis. In: Autophagy .

Munusamy Ponnan, S and Thiruvengadam, K and Kathirvel, S and Shankar, J and Rajaraman, A and Mathaiyan, M and Dinesha, TR and Poongulali, S and Saravanan, S and Murugavel, KG and Swaminathan, S and Tripathy, SP and Neogi, U and Velu, V and Hanna, LE (2021) Elevated Numbers of HIV-Specific Poly-Functional CD8+ T Cells With Stem Cell-Like and Follicular Homing Phenotypes in HIV-Exposed Seronegative Individuals. In: Frontiers in Immunology, 12 .


Nag, J and Patel, J and Tripathi, S (2023) Ubiquitin-Mediated Regulation of Autophagy During Viral Infection. In: Current Clinical Microbiology Reports, 10 (1). pp. 1-8.

Nagaraj, Viswanathan A and Mukhi, Dhanunjay and Sathishkumar, Vinayagam and Subramani, Pradeep A and Ghosh, Susanta K and Pandey, Rajeev R and Shetty, Manjunatha C and Padmanaban, Govindarajan (2015) Asparagine requirement in Plasmodium berghei as a target to prevent malaria transmission and liver infections. In: NATURE COMMUNICATIONS, 6 .


Padiadpu, Jyothi and Baloni, Priyanka and Anand, Kushi and Munshi, MohamedHusen and Thakur, Chandrani and Mohan, Abhilash and Singh, Amit and Chandra, Nagasuma (2016) Identifying and Tackling Emergent Vulnerability in Drug-Resistant Mycobacteria. In: ACS INFECTIOUS DISEASES, 2 (9). pp. 592-607.

Pal, VK and Agrawal, R and Rakshit, S and Shekar, P and Murthy, DTN and Vyakarnam, A and Singh, A (2021) Hydrogen sulfide blocks HIV rebound by maintaining mitochondrial bioenergetics and Redox homeostasis. In: eLife, 10 .

Pandey, B and Srividhya, S and Chatterjee, A and Mangala Prasad, V (2023) Role of surface glycans in enveloped RNA virus infections: A structural perspective. In: Proteins: Structure, Function and Bioinformatics .

Ponnan, SM and Thiruvengadam, K and Tellapragada, C and Ambikan, AT and Narayanan, A and Kathirvel, S and Mathayan, M and Shankar, J and Rajaraman, A and Amanulla, MA and Dinesha, TR and Poongulali, S and Saravanan, S and Murugavel, KG and Swaminathan, S and Velu, V and Shacklett, B and Neogi, U and Hanna, LE (2021) Deciphering the role of mucosal immune responses and the cervicovaginal microbiome in resistance to HIV infection in HIV-exposed seronegative (HESN) women. In: Microbiology Spectrum, 9 (2).

Ponnan, SM and Vidyavijayan, KK and Thiruvengadam, K and Hilda J, N and Mathayan, M and Murugavel, KG and Hanna, LE (2021) Role of Circulating T Follicular Helper Cells and Stem-Like Memory CD4+ T Cells in the Pathogenesis of HIV-2 Infection and Disease Progression. In: Frontiers in Immunology, 12 .

Pratihar, S and Agrawal, R and Pal, VK and Singh, A and Govindaraju, T (2022) Reliable Fluorometric Detection of SARS-CoV-2 by Targeting the G-Quadruplex through pH-Triggered Conformational Polymorphism. In: ACS Sensors, 7 (2). 453 -459.


Raja, S and Paul, A and Raghavan, S and Narayanan, S and Shee, S and Singh, A and Varshney, U and Gopal, B and Vijayan, M (2022) Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition. In: Current Science, 122 (3). pp. 281-289.

Rajeshkumar, S and Kumar, S Venkat and Ramaiah, Arunachalam and Agarwal, Happy and Lakshmi, T and Roopan, Selvaraj Mohana (2018) Biosynthesis of zinc oxide nanoparticles using Mangifera indica leaves and evaluation of their antioxidant and cytotoxic properties in lung cancer (A549) cells. In: ENZYME AND MICROBIAL TECHNOLOGY, 117 . pp. 91-95.

Rajmani, RS and Singh, Prafull and Singh, Lakshya Veer (2017) Apoptotic and Immunosuppressive Effects of Turmeric Paste on 7, 12 Di Methyl Benz (a) Anthracene Induced Skin Tumor Model of Wistar Rat. In: NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL, 69 (8). pp. 1245-1255.

Rakshit, S and Adiga, V and Ahmed, A and Parthiban, C and Chetan Kumar, N and Dwarkanath, P and Shivalingaiah, S and Rao, S and Dâ��Souza, G and Dias, M and Maguire, TJA and Doores, KJ and Zoodsma, M and Geckin, B and Dasgupta, P and Babji, S and van Meijgaarden, KE and Joosten, SA and Ottenhoff, THM and Li, Y and Netea, MG and Stuart, KD and De Rosa, SC and McElrath, MJ and Vyakarnam, A (2022) Evidence for the heterologous benefits of prior BCG vaccination on COVISHIELD™ vaccine-induced immune responses in SARS-CoV-2 seronegative young Indian adults. In: Frontiers in Immunology, 13 .

Rakshit, S and Hingankar, N and Alampalli, SV and Adiga, V and Sundararaj, BK and Sahoo, PN and Finak, G and Uday Kumar J, AJ and Dhar, C and D'Souza, G and Virkar, RG and Ghate, M and Thakar, MR and Paranjape, RS and De Rosa, SC and Ottenhoff, THM and Vyakarnam, A (2020) HIV Skews a Balanced Mtb-Specific Th17 Response in Latent Tuberculosis Subjects to a Pro-inflammatory Profile Independent of Viral Load. In: Cell Reports, 33 (9).

Rakshit, S and Sundararaj, BK and Sahoo, PN and Ottenhoff, THM and van Meijgaarden, KE and Jesuraj, A and D'Souza, G and Vyakarnam, A (2016) Comparative analysis of the host mediated antigen-specific responses In Indian cohorts with different TB infected states. In: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 45 (1). p. 407.

Rakshit, Srabanti and Ahmed, Asma and Adiga, Vasista and Sundararaj, Bharath K and Sahoo, Pravat Nalini and Kenneth, John and D'Souza, George and Bonam, Wesley and Johnson, Christina and Franken, Kees L M C and Ottenhoff, Tom H M and Finak, Greg and Gottardo, Raphael and Stuart, Kenneth D and De Rosa, Stephen C and McElrath, M Juliana and Vyakarnam, Annapurna (2019) BCG revaccination boosts adaptive polyfunctional Th1/Th17 and innate effectors in IGRA(+) and IGRA(-) Indian adults. In: JCI INSIGHT, 4 (24).

Ramaiah, A and Nayak, S and Rakshit, S and McGuire, A and Shanmugam, S and Chandrabose, J and Narayanan, S and EarL, A and Swaminathan, S and Vyakarnam, A (2016) Evolutionary patterns of T cell epitopes in mycobacterium tuberculosis strains isolated in India. In: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 45 (1). p. 33.

Ramaiah, Arunachalam and Dai, Lei and Contreras, Deisy and Sinha, Sanjeev and Sun, Ren and Arumugaswami, Vaithilingaraja (2017) Comparative analysis of protein evolution in the genome of pre-epidemic and epidemic Zika virus. In: Infection, Genetics and Evolution, 51 . pp. 74-85. ISSN 15671348

Ramaiah, Arunachalam and Nayak, Soumya and Rakshit, Srabanti and Manson, Abigail L and Abeel, Thomas and Shanmugam, Sivakumar and Sahoo, Pravat Nalini and John, Anto Jesuraj Uday Kumar and Sundaramurthi, Jagadish Chandrabose and Narayanan, Sujatha and D'Souza, George and von Hoegen, Paul and Ottenhoff, Tom HM and Swaminathan, Soumya and Earl, Ashlee M and Vyakarnam, Annapurna (2019) Evidence for Highly Variable, Region-Specific Patterns of T-Cell Epitope Mutations Accumulating in Mycobacterium tuberculosis Strains. In: FRONTIERS IN IMMUNOLOGY, 10 .

Rananaware, SR and Pathak, S and Majumdar, S and Joseph, JP and Ramteke, NS and Adiga, V and Nandi, D (2023) Dynamic changes in thymic sub-populations during acute and long-term infections with virulent and virulence-attenuated Salmonella Typhimurium strains in C57BL/6 and autoimmune-prone lpr mice. In: Microbial Pathogenesis, 177 .

Ravichandran, S and Banerjee, U and DR, GD and Kandukuru, R and Thakur, C and Chakravortty, D and Balaji, KN and Singh, A and Chandra, N (2021) VB10, a new blood biomarker for differential diagnosis and recovery monitoring of acute viral and bacterial infections. In: EBioMedicine, 67 .

Ray, Semanti and Da Costa, Rochelle and Das, Mrinmoy and Nandi, Dipankar (2019) Interplay of cold shock protein E with an uncharacterized protein, YciF, lowers porin expression and enhances bile resistance in Salmonella Typhimurium. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (23). pp. 9084-9099.


Sambarey, Awanti and Devaprasad, Abhinandan and Baloni, Priyanka and Mishra, Madhulika and Mohan, Abhilash and Tyagi, Priyanka and Singh, Amit and Akshata, JS and Sultana, Razia and Buggi, Shashidhar and Chandra, Nagasuma (2017) Meta-analysis of host response networks identifies a common core in tuberculosis. In: npj Systems Biology and Applications, 3 (1). ISSN 2056-7189

Saravanan, P and Dusthackeer, VNA and Rajmani, RS and Mahizhaveni, B and Nirmal, CR and Rajadas, SE and Bhardwaj, N and Ponnuraja, C and Bhaskar, A and Hemanthkumar, AK and Ramachandran, G and Tripathy, SP (2021) Discovery of a highly potent novel rifampicin analog by preparing a hybrid of the precursors of the antibiotic drugs rifampicin and clofazimine. In: Scientific Reports, 11 (1).

Seifert, Leon Louis and Si, Clara and Saha, Debjani and Sadic, Mohammad and de Vries, Maren and Ballentine, Sarah and Briley, Aaron and Wang, Guojun and Valero-Jimenez, Ana M and Mohamed, Adil and Schaefer, Uwe and Moulton, Hong M and Garcia-Sastre, Adolfo and Tripathi, Shashank and Rosenberg, Brad R and Dittmann, Meike (2019) The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response. In: PLOS PATHOGENS, 15 (11).

Sharma, M and Krammer, F and García-Sastre, A and Tripathi, S (2019) Moving from empirical to rational vaccine design in the ‘Omics’ era. In: Vaccines, 7 (3).

Shet, A and Nagaraja, P and Dixit, N (2016) Low virulence of HIV-1 subtype C underlies treatment success despite high baseline viral loads. In: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 45 (1). p. 257.

Shete, A and Bichare, S and Pujari, V and Virkar, R and Thakar, M and Ghate, M and Patil, S and Vyakarnam, A and Gangakhedkar, R and Bai, G and Niki, T and Hattori, T (2020) Elevated Levels of Galectin-9 but Not Osteopontin in HIV and Tuberculosis Infections Indicate Their Roles in Detecting MTB Infection in HIV Infected Individuals. In: Frontiers in Microbiology, 11 .

Shiraz, R and Tripathi, S (2023) Enhanced recombination among Omicron subvariants of SARS-CoV-2 contributes to viral immune escape. In: Journal of Medical Virology, 95 (2).

Shyam, M and Verma, H and Bhattacharje, G and Mukherjee, P and Singh, S and Kamilya, S and Jalani, P and Das, S and Dasgupta, A and Mondal, A and Das, AK and Singh, A and Brucoli, F and Bagnéris, C and Dickman, R and Basavanakatti, VN and Naresh Babu, P and Sankaran, V and Dev, A and Sinha, BN and Bhakta, S and Jayaprakash, V (2022) Mycobactin Analogues with Excellent Pharmacokinetic Profile Demonstrate Potent Antitubercular Specific Activity and Exceptional Efflux Pump Inhibition. In: Journal of Medicinal Chemistry, 65 (1). pp. 234-256.

Shytaj, IL and Procopio, FA and Tarek, M and Carlon-Andres, I and Tang, H-Y and Goldman, AR and Munshi, M and Kumar Pal, V and Forcato, M and Sreeram, S and Leskov, K and Ye, F and Lucic, B and Cruz, N and Ndhlovu, LC and Bicciato, S and Padilla-Parra, S and Diaz, RS and Singh, A and Lusic, M and Karn, J and Alvarez-Carbonell, D and Savarino, A (2021) Glycolysis downregulation is a hallmark of HIV-1 latency and sensitizes infected cells to oxidative stress. In: EMBO Molecular Medicine .

Singh, S and Ghosh, S and Pal, VK and Munshi, M and Shekar, P and Narasimha Murthy, DT and Mugesh, G and Singh, A (2021) Antioxidant nanozyme counteracts HIV-1 by modulating intracellular redox potential. In: EMBO Molecular Medicine .

Singh, S and Kumbhar, D and Reghu, D and Venugopal, SJ and Rekha, PT and Mohandas, S and Rao, S and Rangaiah, A and Chunchanur, SK and Saini, DK and Umapathy, S (2022) Culture-Independent Raman Spectroscopic Identification of Bacterial Pathogens from Clinical Samples Using Deep Transfer Learning. In: Analytical Chemistry, 94 (42). pp. 14745-14754.

Sperk, M and Mikaeloff, F and Svensson-Akusjärvi, S and Krishnan, S and Ponnan, SM and Ambikan, AT and Nowak, P and Sönnerborg, A and Neogi, U (2021) Distinct lipid profile, low-level inflammation, and increased antioxidant defense signature in HIV-1 elite control status. In: iScience, 24 (2).

Subhadra, B and Agrawal, R and Pal, VK and Chenine, A-L and Mattathil, JG and Singh, A (2023) Reply to Kuli�, Ž. Comment on �Subhadra et al. Significant Broad-Spectrum Antiviral Activity of Bi121 against Different Variants of SARS-CoV-2. Viruses 2023, 15, 1299�. In: Viruses, 15 (11).

Subramaniam, MK and Ranganathan, B (1946) Peculiar cytological behaviour of a distillery yeast. In: Nature, 157 (3976). pp. 50-51.

Sundararaj, BK and D'Souza, G and Jesuraj, A and Johnson, C and Bonam, W and Hannah, LE and Swaminathan, S and Thakkar, M and Vyakarnam, A (2016) Ps20: A novel correlate of inflammation and infection in TB? In: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 45 (1). p. 36.

Swaraj, S and Malpani, T and Tripathi, S (2022) Antagonism and Evasion of Cellular Innate Immunity by SARS-CoV-2. [Book Chapter]


Thakur, C and Tripathi, A and Ravichandran, S and Shivananjaiah, A and Chakraborty, A and Varadappa, S and Chikkavenkatappa, N and Nagarajan, D and Lakshminarasimhaiah, S and Singh, A and Chandra, N (2022) A new blood-based RNA signature (R9), for monitoring effectiveness of tuberculosis treatment in a South Indian longitudinal cohort. In: iScience, 25 (2).

Tyagi, P and Pal, VK and Agrawal, R and Singh, S and Srinivasan, S and Singh, A (2020) Mycobacterium tuberculosis reactivates hiv-1 via exosome-mediated resetting of cellular redox potential and bioenergetics. In: mBio, 11 (2).


Varadarajan, Nandan Mysore and Sundaram, Balamurugan and Subramani, Pradeep Annamalai and Kalappa, Devaiah Monnanda and Ghosh, Susanta Kumar and Nagaraj, Viswanathan Arun (2014) Plasmodium berghei glycine cleavage system T-protein is non-essential for parasite survival in vertebrate and invertebrate hosts. In: MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 197 (1-2). pp. 50-55.

Verma, Taru and Bhaskarla, Chetana and Sadhir, Ismath and Sreedharan, Syama and Nandi, Dipankar (2018) Non-steroidal anti-inflammatory drugs, acetaminophen and ibuprofen, induce phenotypic antibiotic resistance in Escherichia coli: roles of marA and acrB. In: FEMS MICROBIOLOGY LETTERS, 365 (22).


Weinberg, A and Tugizov, S and Pandiyan, P and Jin, G and Rakshit, S and Vyakarnam, A and Naglik, JR (2020) Innate immune mechanisms to oral pathogens in oral mucosa of HIV-infected individuals. In: Oral Diseases, 26 (S1). pp. 69-79.


Yadav, Shikha and Pathak, Sanmoy and Sarikhani, Mohsen and Majumdar, Shamik and Ray, Semanti and Chandrasekar, Bhagawat S and Adiga, Vasista and Sundaresan, Nagalingam R and Nandi, Dipankar (2018) Nitric oxide synthase 2 enhances the survival of mice during Salmonella Typhimurium infection-induced sepsis by increasing reactive oxygen species, inflammatory cytokines and recruitment of neutrophils to the peritoneal cavity. In: FREE RADICAL BIOLOGY AND MEDICINE, 116 . pp. 73-87.

This list was generated on Sun Jul 21 18:23:27 2024 IST.