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Shelar, Ashish and Kumar, Prasun and Bansal, Manju (2014) DEFINING alpha-HELIX GEOMETRY BY C-alpha ATOM TRACE vs (phi-psi) TORSION ANGLES: A COMPARATIVE ANALYSIS. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 116-127.
Ghoshdastidar, Debostuti and Bansal, Manju (2019) Dynamics of physiologically relevant noncanonical DNA structures: an overview from experimental and theoretical studies. In: BRIEFINGS IN FUNCTIONAL GENOMICS, 18 (3). pp. 192-204.
Yella, Venkata Rajesh and Kumar, Aditya and Bansal, Manju (2018) Identification of putative promoters in 48 eukaryotic genomes on the basis of DNA free energy. In: SCIENTIFIC REPORTS, 8 .
Yella, Venkata Rajesh and Bansal, Manju (2017) DNA structural features of eukaryotic TATA-containing and TATA-less promoters. In: FEBS OPEN BIO, 7 (3). pp. 324-334.
Bhattacharyya, Dhananjay and Halder, Sukanya and Basu, Sankar and Mukherjee, Debasish and Kumar, Prasun and Bansal, Manju (2017) RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs. In: JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 31 (2). pp. 219-235.
Kumar, Aditya and Bansal, Manju (2017) Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression. In: DNA RESEARCH, 24 (1). pp. 25-35.
Jena, NR and Bansal, Manju and Mishra, PC (2016) Conformational stabilities of iminoallantoin and its base pairs in DNA: implications for mutagenicity. In: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 18 (18). pp. 12774-12783.
Khanday, Imtiyaz and Das, Sanjukta and Chongloi, Grace L and Bansal, Manju and Grossniklaus, Ueli and Vijayraghavan, Usha (2016) Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. In: PLANT PHYSIOLOGY, 172 (1). pp. 372-388.
Shelar, Ashish and Bansal, Manju (2016) Helix perturbations in membrane proteins assist in inter-helical interactions and optimal helix positioning in the bilayer. In: BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 1858 (11). pp. 2804-2817.
Gupta, Asmita and Kailasam, Senthilkumar and Bansal, Manju (2016) Insights into the Structural Dynamics of Nucleocytoplasmic Transport of tRNA by Exportin-t. In: BIOPHYSICAL JOURNAL, 110 (6). pp. 1264-1279.
Bairagya, Hridoy R and Bansal, Manju (2016) New insight into the architecture of oxy-anion pocket in unliganded conformation of GAT domains: A MD-simulation study. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 84 (3). pp. 360-373.
Kumar, Prasun and Bansal, Manju (2016) Structural and functional analyses of PolyProline-II helices in globular proteins. In: JOURNAL OF STRUCTURAL BIOLOGY, 196 (3). pp. 414-425.
Kumar, Aditya and Manivelan, Vasumathi and Bansal, Manju (2016) Structural features of DNA are conserved in the promoter region of orthologous genes across different strains of Helicobacter pylori. In: FEMS MICROBIOLOGY LETTERS, 363 (18).
Gupta, Asmita and Bansal, Manju (2016) The role of sequence in altering the unfolding pathway of an RNA pseudoknot: a steered molecular dynamics study. In: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 18 (41). pp. 28767-28780.
Kumar, Prasun and Bansal, Manju (2015) Dissecting pi-helices: sequence, structure and function. In: FEBS JOURNAL, 282 (22). pp. 4415-4432.
Kumar, Prasun and Bansal, Manju (2015) Identification of local variations within secondary structures of proteins. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (5). pp. 1077-1086.
Ali, Asfa and Bansal, Manju and Bhattacharya, Santanu (2015) Ligand 5,10,15,20-Tetra(N-methyl-4-pyridyl)porphine (TMPyP4) Prefers the Parallel Propeller-Type Human Telomeric G-Quadruplex DNA over Its Other Polymorphs. In: JOURNAL OF PHYSICAL CHEMISTRY B, 119 (1). pp. 5-14.
Mukherjee, Sanchita and Kailasam, Senthilkumar and Bansal, Manju and Bhattacharyya, Dhananjay (2015) Stacking Interactions in RNA and DNA: Roll-Slide Energy Hyperspace for Ten Unique Dinucleotide Steps. In: BIOPOLYMERS, 103 (3). pp. 134-147.
Mukherjee, Sanchita and Kailasam, Senthilkumar and Bansal, Manju and Bhattacharyya, Dhananjay (2014) Energy Hyperspace for Stacking Interaction in AU/AU Dinucleotide Step: Dispersion-Corrected Density Functional Theory Study. In: BIOPOLYMERS, 101 (1). pp. 107-120.
Gupta, Asmita and Bansal, Manju (2014) Local Structural and Environmental Factors Define the Efficiency of an RNA Pseudoknot Involved in Programmed Ribosomal Frameshift Process. In: JOURNAL OF PHYSICAL CHEMISTRY B, 118 (41). pp. 11905-11920.
Kumar, Prasun and Kailasam, Senthilkumar and Chakraborty, Shaunak and Bansal, Manju (2014) MolBridge: a program for identifying nonbonded interactions in small molecules and biomolecular structures. In: JOURNAL OF APPLIED CRYSTALLOGRAPHY, 47 (5). pp. 1772-1776.
Bansal, Manju and Kumar, Aditya and Yella, Venkata Rajesh (2014) Role of DNA sequence based structural features of promoters in transcription initiation and gene expression. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 25 . pp. 77-85.
Shelar, Ashish and Bansal, Manju (2014) Sequence and conformational preferences at termini of alpha-helices in membrane proteins: Role of the helix environment. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 82 (12). pp. 3420-3436.
Yella, Venkata Rajesh and Bansal, Manju (2013) DNA STRUCTURAL FEATURES AND ARCHITECTURE OF PROMOTER REGIONS PLAY A ROLE IN GENE RESPONSIVENESS OF S. CEREVISIAE. In: JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 11 (6, SI).
Kumar, Aditya and Bansal, Manju (2012) Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 423-431.
Kumar, Prasun and Bansal, Manju (2012) HELANAL-Plus: a web server for analysis of helix geometry in protein structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 30 (6). pp. 773-783.
Gupta, Asmita and Bansal, Manju (2015) Molecular basis for nucleocytoplasmic transport of tRNA by Exportin-t. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). pp. 59-60.
Amaro, Rommie E and Bansal, Manju (2014) Theory and simulation: Tools for solving the insolvable. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 25 . IV-V.
Bansal, Manju and Jayaram, B and Mittal, Aditya (2012) Nucleic acids in disease and disorder: Understanding the language of life emerging from the `ABC' of DNA. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 375-378.
