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Iqbal, S and Pal, D (2024) microRNA Isolation, Expression Profiling, and Target Identification for Neuroprotection in Alzheimer�s Disease. [Book Chapter]
Natarajan, S and KrishnaKumar, N and Anuchan, HV and Pal, D and Nandy, SK (2018) ReneGENE-Novo: Co-designed algorithm-architecture for accelerated preprocessing and assembly of genomic short reads. In: 14th International Symposium on Applied Reconfigurable Computing, ARC 2018, 2 - 4 May 2018, Santorini, pp. 564-577.
Das, NR and Chaudhury, KN and Pal, D (2024) DREAMweb: An online tool for graph-based modeling of NMR protein structure. In: Proteomics .
Gupta, S and Pal, D (2024) Detection of intrinsic transcription termination sites in bacteria: consensus from hairpin detection approaches. In: Journal of Biomolecular Structure and Dynamics .
Deepa Maheshvare, M and Charaborty, R and Haldar, S and Raha, S and Pal, D (2024) Kiphynet: an online network simulation tool connecting cellular kinetics and physiological transport. In: Metabolomics, 20 (5).
Qadri, O and Bashir, S and Banday, M and Hilal, N and Majeed, Y and Fatima, NI and Pal, D and Fazili, KM (2024) Tumour suppressor protein sMEK1 links to IRE1 signalling pathway to modulate its activity during ER stress. In: Biochimica et Biophysica Acta - Molecular Cell Research, 1871 (7).
Gupta, S and Padmashali, N and Pal, D (2023) INTERPIN: A repository for intrinsic transcription termination hairpins in bacteria. In: Biochimie, 214-B . pp. 228-236.
Deepa Maheshvare, M and Raha, S and König, M and Pal, D (2023) A pathway model of glucose-stimulated insulin secretion in the pancreatic β-cell. In: Frontiers in Endocrinology, 14 .
Gupta, S and Padmashali, N and Pal, D (2023) INTERPIN: A repository for intrinsic transcription termination hairpins in bacteria. In: Biochimie .
Bashir, S and Banday, M and Qadri, O and Pal, D and Bashir, A and Hilal, N and Altaf, M and Fazili, KM (2023) The Bcl-2 family protein bid interacts with the ER stress sensor IRE1 to differentially modulate its RNase activity. In: FEBS Letters .
Sindhu, T and Rajamanikandan, S and Jeyakanthan, J and Pal, D (2023) Investigation of protein-ligand binding motions through protein conformational morphing and clustering of cytochrome bc1-aa3 super complex. In: Journal of Molecular Graphics and Modelling, 118 .
Safiriyu, AA and Mulchandani, V and Anakkacheri, MN and Pal, D and Das Sarma, J (2023) Proline-Proline Dyad in the Fusion Peptide of the Murine β-Coronavirus Spike Protein's S2 Domain Modulates Its Neuroglial Tropism. In: Viruses, 15 (1).
Raychaudhury, C and Srinivasan, S and Pal, D (2023) Identification of potential oral cancer drugs as Bcl-2 inhibitors from known anti-neoplastic agents through docking studies. In: Journal of Mathematical Chemistry .
Katrahalli, U and Shanker, G and Pal, D and Hadagali, MD (2022) Molecular spectroscopic and docking analysis of the interaction of fluorescent thiadicarbocyanine dye with biomolecule bovine serum albumin. In: Journal of Biomolecular Structure and Dynamics .
Das, NR and Chaudhury, KN and Pal, D (2022) Improved NMR-data-compliant protein structure modeling captures context-dependent variations and expands the scope of functional inference. In: Proteins: Structure, Function and Bioinformatics .
Maity, D and Pal, D (2022) MD DaVis: Interactive data visualization of protein molecular dynamics. In: Bioinformatics, 38 (12). pp. 3299-3301.
Sarkar, L and Oko, L and Gupta, S and Bubak, AN and Das, B and Gupta, P and Safiriyu, AA and Singhal, C and Neogi, U and Bloom, D and Banerjee, A and Mahalingam, R and Cohrs, RJ and Koval, M and Shindler, KS and Pal, D and Nagel, M and Sarma, JD (2022) Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication. In: Virology, 569 . pp. 13-28.
Safiriyu, AA and Singh, M and Kishore, A and Mulchandani, V and Maity, D and Behera, A and Sinha, B and Pal, D and Das Sarma, J (2022) Two Consecutive Prolines in the Fusion Peptide of Murine β-Coronavirus Spike Protein Predominantly Determine Fusogenicity and May Be Essential but Not Sufficient to Cause Demyelination. In: Viruses, 14 (4).
Ghosh, A and Pal, D (2022) Do lower mantle slabs contribute in generating the Indian Ocean geoid low? In: Tectonophysics, 822 .
Kumar, S and Rangarajan, A and Pal, D (2022) Somatic mutation analyses of stem-like cells in gingivobuccal oral squamous cell carcinoma reveals DNA damage response genes. In: Genomics, 114 (2).
Gupta, S and Pal, D (2021) Clusters of hairpins induce intrinsic transcription termination in bacteria. In: Scientific Reports, 11 (1).
Kashyap, R and Yerra, NV and Oja, J and Bala, S and Potuganti, GR and Thota, JR and Alla, M and Pal, D and Addlagatta, A (2021) Exo-selective intermolecular Diels�Alder reaction by PyrI4 and AbnU on non-natural substrates. In: Communications Chemistry, 4 (1).
Iqbal, S and Malik, MZ and Pal, D (2021) Network-based identification of miRNAs and transcription factors and in silico drug screening targeting δ-secretase involved in Alzheimer's disease. In: Heliyon, 7 (12).
Saha, M and Deshpande, N and Dubey, A and Pal, D and Atreya, HS and Rangarajan, A (2021) Sustained AMPK Activation and Proline Metabolism Play Critical Roles in the Survival of Matrix-Deprived Transformed Cells. In: Frontiers in Cell and Developmental Biology, 9 .
Maity, D and Pal, D (2021) Molecular Dynamics of Hemoglobin Reveals Structural Alterations and Explains the Interactions Driving Sickle Cell Fibrillation. In: Journal of Physical Chemistry B .
Pal, D (2021) Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity. In: Journal of Structural Biology, 213 (2).
Garg, A and Pal, D (2021) Inferring metal binding sites in flexible regions of proteins. In: Proteins: Structure, Function and Bioinformatics .
Saadi, F and Pal, D and Sarma, JD (2021) Spike Glycoprotein Is Central to Coronavirus Pathogenesis-Parallel Between m-CoV and SARS-CoV-2. In: Annals of Neurosciences .
Pal, A and Pal, D and Mitra, P (2021) A computational framework for modeling functional protein-protein interactions. In: Proteins: Structure, Function and Bioinformatics .
Natarajan, S and Krishna Kumar, N and Pal, D and Nandy, SK (2020) Towards Accelerated Genome Informatics on Parallel HPC Platforms: The ReneGENE-GI Perspective. In: Journal of Signal Processing Systems, 92 (10). pp. 1197-1213.
Athalye, CD and Pal, D and Pillai, HK (2020) Behavior of n Infinite Chains of Kinematic Points with the Immediate-Neighbors Interaction Dynamics. In: IEEE Transactions on Automatic Control, 65 (7). pp. 2929-2940.
Pal, D and Sahu, S and Banerjee, R (2020) New facets of larger Nest motifs in proteins. In: Proteins: Structure, Function and Bioinformatics .
Arora, A and Patil, V and Kundu, P and Kondaiah, P and Hegde, AS and Arivazhagan, A and Santosh, V and Pal, D and Somasundaram, K (2019) Serum biomarkers identification by iTRAQ and verification by MRM: S100A8/S100A9 levels predict tumor-stroma involvement and prognosis in Glioblastoma. In: Scientific Reports, 9 (1). p. 2749.
Raychaudhury, C and Rizvi, I H and Pal, D (2019) Predicting gas phase entropy of select hydrocarbon classes through specific information-theoretical molecular descriptors. In: SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 30 (7). pp. 491-505.
Garg, A and Pal, D (2019) Exploring the use of molecular dynamics in assessing protein variants for phenotypic alterations. In: Human Mutation, 40 (9). pp. 1424-1435.
Wagh, B and Chaluvarayaswamy, R and Pal, D (2017) Assessment of adaptive breast cancer screening policies for improved mortality reduction in low to middle income countries. In: Asian Pacific Journal of Cancer Prevention, 18 (9). pp. 2375-2380.
Maity, D and Satish, R and Jadeja, DA and Dharmaraju, R and Chandru, V and Sundaresan, R and Singh, H and Pal, D (2024) MIDAS: a new platform for quality-graded health data for AI-enabled healthcare in India. In: Nature Medicine .
Pal, D and Ghosh, A (2023) How the Indian Ocean Geoid Low Was Formed. In: Geophysical Research Letters, 50 (9).
Raychaudhury, C and Pal, D (2020) Usefulness of graph vertex complexity and class partial information content in explaining gas phase thermal entropy of chemical compounds. In: Journal of Mathematical Chemistry, 58 (5). pp. 887-892.
