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Vishveshwara, Saraswathi and Dighe, Anasuya and Gadiyaram, Vasundhara (2019) Graph Spectral Properties of the Sidechain Networks of Protein Structures: Implications to Allostery and Structure Comparison. In: 63rd Annual Meeting of the Biophysical-Society, 2 - 6 March, 2019, Baltimore, MD, 463A-464A.
Ghosh, Soma and Vishveshwara, Saraswathi and Chandra, Nagasuma (2013) Inferring biochemical routes from biochemical networks. In: 4th Annual ORNL Biomedical Sciences and Engineering Conference on Collaborative Biomedical Innovations, MAY 21-23, 2013, Biomed Sci & Engn Ctr, Oak Ridge Natl Lab, Oak Ridge, TN.
Bhat, Chanda R and Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2013) NON-GLYCINE RESIDUES IN THE DISALLOWED REGIONS OF THE RAMACHANDRAN MAP AND THEIR NEIGHBORHOOD PREFERENCES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 95-106.
Prabantu, Vasam Manjveekar and Gadiyaram, Vasundhara and Vishveshwara, Saraswathi and Srinivasan, Narayanaswamy (2022) Understanding structural variability in proteins using protein structural networks. In: Current Research in Structural Biology, 4 . pp. 134-145. ISSN 2665928X
Dvořák, Zdeněk and Kopp, Felix and Costello, Cait M and Kemp, Jazmin S and Li, Hao and Vrzalová, Aneta and Štěpánková, Martina and Bartoňková, Iveta and Jiskrová, Eva and Poulíková, Karolína and Vyhlídalová, Barbora and Nordstroem, Lars U and Karunaratne, Chamini V and Ranhotra, Harmit S and Mun, Kyu Shik and Naren, Anjaparavanda P and Murray, Iain A and Perdew, Gary H and Brtko, Julius and Toporova, Lucia and Schön, Arne and Wallace, Bret D and Walton, William G and Redinbo, Matthew R and Sun, Katherine and Beck, Amanda and Kortagere, Sandhya and Neary, Michelle C and Chandran, Aneesh and Vishveshwara, Saraswathi and Cavalluzzi, Maria M and Lentini, Giovanni and Cui, Julia Yue and Gu, Haiwei and March, John C and Chatterjee, Shirshendu and Matson, Adam and Wright, Dennis and Flannigan, Kyle L and Hirota, Simon A and Sartor, Ryan Balfour and Mani, Sridhar (2020) Targeting the pregnane X receptor using microbial metabolite mimicry. In: EMBO Molecular Medicine . ISSN 1757-4676
Gadiyaram, Vasundhara and Vishveshwara, Smitha and Vishveshwara, Saraswathi (2019) From Quantum Chemistry to Networks in Biology: A Graph Spectral Approach to Protein Structure Analyses. In: JOURNAL OF CHEMICAL INFORMATION AND MODELING, 59 (5, SI). pp. 1715-1727.
Gadiyaram, Vasundhara and Ghosh, Sambit and Vishveshwara, Saraswathi (2017) A graph spectral-based scoring scheme for network comparison. In: Journal of Complex Networks, 5 (2). pp. 219-244. ISSN 2051-1310
Ghosh, Sambit and Gadiyaram, Vasundhara and Vishveshwara, Saraswathi (2017) Validation of protein structure models using network similarity score. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 85 (9). pp. 1759-1776.
Chandran, Aneesh and Vishveshwara, Saraswathi (2016) Exploration of the conformational landscape in pregnane X receptor reveals a new binding pocket. In: PROTEIN SCIENCE, 25 (11). pp. 1989-2005.
Bhattacharyya, Moitrayee and Ghosh, Soma and Vishveshwara, Saraswathi (2015) Protein Structure and Function: Looking through the Network of Side-Chain Interactions. In: CURRENT PROTEIN & PEPTIDE SCIENCE, 17 (1). pp. 4-25.
Williams, Sunanda Margrett and Chandran, Anu V and Vijayabaskar, Mahalingam S and Roy, Sourav and Balaram, Hemalatha and Vishveshwara, Saraswathi and Vijayan, Mamannamana and Chatterji, Dipankar (2014) A Histidine Aspartate Ionic Lock Gates the Iron Passage in Miniferritins from Mycobacterium smegmatis. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 289 (16). pp. 11042-11058.
Arora, Smriti and Bhamidimarri, Satya Prathyusha and Bhattacharyya, Moitrayee and Govindan, Ashwin and Weber, Michael HW and Vishveshwara, Saraswathi and Varshney, Umesh (2013) Distinctive contributions of the ribosomal P-site elements m(2)G966, m(5)C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli. In: Nucleic Acids Research, 41 (9). pp. 4963-4975.
Banavar, Jayanth R and Vishveshwara, Saraswathi (2013) Protein structure and folding - simplicity within complexity. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 31 (9, SI). pp. 973-975.
Bhattacharyya, Moitrayee and Bhat, Chanda R and Vishveshwara, Saraswathi (2013) An automated approach to network features of protein structure ensembles. In: PROTEIN SCIENCE, 22 (10). pp. 1399-1416.
Vijayabaskar, MS and Vishveshwara, Saraswathi (2012) Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks. In: PLOS COMPUTATIONAL BIOLOGY, 8 (5).
Chatterjee, Subhojyoti and Bhattacharyya, Moitrayee and Vishveshwara, Saraswathi (2012) Network properties of protein-decoy structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 29 (6). pp. 606-622.
Bhattacharyya, Moitrayee and Upadhyay, Roopali and Vishveshwara, Saraswathi (2012) Interaction Signatures Stabilizing the NAD(P)-Binding Rossmann Fold: A Structure Network Approach. In: PLOS ONE, 7 (12).
Dighe, Anasuya and Chandra, Nagasuma and Vishveshwara, Saraswathi and Ananthasuresh, GK (2015) Dissecting Ligand Binding Sites : A Layer at a Time. In: BIOPHYSICAL JOURNAL, 108 (2, 1). 216A.
Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Influence of iron on iron dependent repressor (IdeR) activation and DNA binding. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). p. 8.
Ghosh, Soma and Chandra, Nagasuma and Vishveshwara, Saraswathi (2015) Investigating the Mechanism of Iron Dependent Repressor (IDER) Activation and DNA Binding. In: BIOPHYSICAL JOURNAL, 108 (2, 1). 377A.
