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Eswar, Narayanan and Ramakrishnan, C and Srinivasan, N (2003) Stranded in isolation: structural role of isolated extended strands in proteins. In: Protein Engineering, 16 (5). pp. 331-339.
Ramakrishnan, C and Dani, VS and Ramasarma, T (2002) A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins. In: Protein Engineering, 15 (10). pp. 783-798.
Rudresh, * and Jain, Rinku and Dani, Vardhan and Mitra, Ashima and Srivastava, Sarika and Sarma, Siddhartha P and Varadarajan, R and Ramakumar, S (2002) Structural consequences of replacement of an \alpha-helical Pro residue in Escherichia coli thioredoxin. In: Protein Engineering, 15 (8). pp. 627-633.
Maithal, Kapil and Ravindra, Gudihal and Nagaraj, G and Singh, Kumar S and Balaram, Hemalatha and Balaram, P (2002) Subunit interface mutation disrupting an aromatic cluster in Plasmodium falciparum triosephosphate isomerase: effect on dimer stability. In: Protein Engineering, 15 (7). pp. 575-584.
Brinda, KV and Kannan, N and Vishveshwara, S (2002) Analysis of homodimeric protein interfaces by graph-spectral methods. In: Protein Engineering, 15 (4). pp. 265-277.
Ramagopal, Udupi A and Ramakumar, Suryanarayanarao and Mathur, Puniti and Joshi, Ratanmani and Chauhan, VS (2002) Dehydrophenylalanine zippers: strong helix-helix clamping through a network of weak interactions. In: Protein Engineering, 15 (4). pp. 331-335.
Gupta, Surbhi and Pandit, Shashi B and Srinivasan, Narayanaswamy and Chatterji, Dipankar (2002) Proteomics analysis of carbon-starved Mycobacterium smegmatis: Induction of Dps-like protein. In: Protein Engineering, 15 (6). pp. 503-511.
Balaji, S and Srinivasan, N (2001) Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins. In: Protein Engineering, 14 (4). pp. 219-226.
Kannan, N and Vishveshwara, S (2000) Aromatic clusters: a determinant of thermal stability of thermophilic proteins. In: Protein Engineering, 13 (11). pp. 753-761.
Ratnaparkhi, Girish S and Awasthi, Satish Kumar and Rani, P and Balaram, P and Varadarajan, R (2000) Structural and thermodynamic consequences of introducing alpha-aminoisobutyric acid in the S peptide of ribonuclease S. In: Protein Engineering, 13 (10). pp. 697-702.
Eswar, Narayanan and Ramakrishnan, C (2000) Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures. In: Protein Engineering, 13 (4). pp. 227-238.
Parthasarathy, S and Murthy, MRN (2000) Protein thermal stability: insights from atomic displacement parameters (B values). In: Protein Engineering, 13 (1). pp. 9-13.
Iengar, Prathima and Ramakrishnan, C (1999) Knowledge-based modeling of the serine protease triad into non-proteases. In: Protein Engineering, 12 (8). pp. 649-655.
Narayanan, Eswar and Ramakrishnan, C (1999) Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures. In: Protein Engineering, 12 (6). pp. 447-455.
Srinivasan, N and Antonelli, Marcelo and Jacob, Germaine and Korn, Iris and Jedlicki, Ana and Dhanaraj, V and Sayed, Muhammed FR and Blundell, Tom L and Allende, Catherine C and Allende, Jorge E (1999) Structural interpretation of site-directed mutagenesis and specificity of the catalytic subunit of protein kinase CK2 using comparative modelling. In: Protein Engineering, 12 (2). pp. 119-127.
Gunasekaran, K and Ramakrishnan, C and Balaram, P (1997) Beta-Hairpins in proteins revisited: lessons for de novo design. In: Protein Engineering, 10 (10). pp. 1131-1141.
De, Amitabha and Paul, BD and Nagaraja, V (1997) Use of protein A gene fusions for the analysis of structure–function relationship of the transactivator protein C of bacteriophage Mu. In: Protein Engineering, 10 (8). pp. 935-941.
Ramesh, V and De, Amitabha and Nagaraja, V (1994) Engineering hyperexpression of bacteriophage Mu C protein by removal of secondary structure at the translation initiation region. In: Protein Engineering, 7 (8). pp. 1053-1057.
Sowdhamini, R and Ramakrishnan, C and Balaram, P (1993) Modelling multiple disulphide loop containing polypeptides by random conformation generation. The test cases of α-conotoxin GI and edothelin I. In: Protein Engineering, 6 (8). pp. 873-882.
*, Madhusudan and Vijayan, M (1992) Additional binding sites in lysozyme. X-ray analysis of lysozyme complexes with bromophenol red and bromophenol blue. In: Protein Engineering, 5 (5). pp. 399-404.
Sowdhamini, R and Srinivasan, N and Shoichet, Brian and Santi, Daniel V and Ramakrishnan, C and Balaram, P (1989) Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis. In: Protein Engineering, 3 (2). pp. 95-103.
De, Amitabha and Paul, BD and Ramesh, V and Nagaraja, V (1977) Use of protein A gene fusions for the analysis of structure-function relationship of the transactivator protein C of bacteriophage Mu. In: Protein Engineering, 10 (8). pp. 935-941.
