|
 | Up a level |
Natarajan, Santhi and KrishnaKumar, N and Pavan, M and Pal, Debnath and Nandy, SK (2018) ReneGENE-DP: Accelerated Parallel Dynamic Programming for Genome Informatics. In: IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT), MAR 16-17, 2018, Bangalore, INDIA.
de Oliveira, Silvia Rodrigues and Raha, Soumyendu and Pal, Debnath (2018) Global Asymptotic Stability of a Non-linear Population Model of Diabetes Mellitus. In: Differential and Difference Equations with Applications. ICDDEA 2017 - International Conference on Differential & Difference Equations and Applications, June 5 - 9, 2017, Amadora, Portugal, pp. 351-357.
Muralidharan, Monita and Mitra, Amrita and Maity, Dibyajyoti and Pal, Debnath and Mandal, Amit Kumar (2019) Structural analysis of glutathionyl hemoglobin using native mass spectrometry. In: JOURNAL OF STRUCTURAL BIOLOGY, 208 (3).
Zhang, Jing and Kinch, Lisa N and Cong, Qian and Katsonis, Panagiotis and Lichtarge, Olivier and Savojardo, Castrense and Babbi, Giulia and Martelli, Pier Luigi and Capriotti, Emidio and Casadio, Rita and Garg, Aditi and Pal, Debnath and Weile, Jochen and Sun, Song and Verby, Marta and Roth, Frederick P and Grishin, Nick (2019) Assessing predictions on fitness effects of missense variants in calmodulin. In: HUMAN MUTATION .
Savojardo, Castrense and Petrosino, Maria and Babbi, Giulia and Bovo, Samuele and Corbi-Verge, Caries and Casadio, Rita and Fariselli, Piero and Folkman, Lukas and Garg, Aditi and Karimi, Mostafa and Katsonis, Panagiotis and Kim, Philip M and Lichtarge, Olivier and Martelli, Pier Luigi and Pasquo, Alessandra and Pal, Debnath and Shen, Yang and Strokach, Alexey and Turin, Paola and Zhou, Yaoqi and Andreoletti, Gaia and Brenner, Steven E and Chiaraluce, Roberta and Consalvi, Valerio and Capriotti, Emidio (2019) Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge. In: HUMAN MUTATION, 40 (9, SI). pp. 1392-1399.
Voskanian, Alin and Katsonis, Panagiotis and Lichtarge, Olivier and Pejaver, Vikas and Radivojac, Predrag and Mooney, Sean D and Capriotti, Emidio and Bromberg, Yana and Wang, Yanran and Miller, Max and Martelli, Pier Luigi and Savojardo, Castrense and Babbi, Giulia and Casadio, Rita and Cao, Yue and Sun, Yuanfei and Shen, Yang and Garg, Aditi and Pal, Debnath and Yu, Yao and Huff, Chad D and Tavtigian, Sean and Young, Erin and Neuhausen, Susan L and Ziv, Elad and Pal, Lipika R and Andreoletti, Gaia and Brenner, Steven E and Kann, Maricel G (2019) Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. In: HUMAN MUTATION, 40 (9, SI). pp. 1612-1622.
Singh, Manmeet and Kishore, Abhinoy and Maity, Dibyajyoti and Sunanda, Punnepalli and Krishnarjuna, Bankala and Vappala, Sreeparna and Raghothama, Srinivasarao and Kenyon, Lawrence C. and Pal, Debnath and Das Sarma, Jayasri (2019) A proline insertion-deletion in the spike glycoprotein fusion peptide of mouse hepatitis virus strongly alters neuropathology. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (20). pp. 8064-8087.
Zhang, Jing and Kinch, Lisa N and Cong, Qian and Katsonis, Panagiotis and Lichtarge, Olivier and Savojardo, Castrense and Babbi, Giulia and Martelli, Pier Luigi and Capriotti, Emidio and Casadio, Rita and Garg, Aditi and Pal, Debnath and Weile, Jochen and Sun, Song and Verby, Marta and Roth, Frederick P and Grishin, Nick (2019) Assessing predictions on fitness effects of missense variants in calmodulin. In: HUMAN MUTATION, 40 (9, SI). pp. 1463-1473.
Raychaudhury, Chandan and Rizvi, Md Imbesat Hassan and Pal, Debnath (2019) Combinatorial Design of Molecule using Activity-Linked Substructural Topological Information as Applied to Antitubercular Compounds. In: CURRENT COMPUTER-AIDED DRUG DESIGN, 15 (1). pp. 67-81.
Banerjee, Anupam and Pal, Abantika and Pal, Debnath and Mitra, Pralay (2018) Ebolavirus interferon antagonists-protein interaction perspectives to combat pathogenesis. In: BRIEFINGS IN FUNCTIONAL GENOMICS, 17 (6). pp. 392-401.
Hussain, Afaq and Das Sarma, Subhajit and Babu, Swathy and Pal, Debnath and Das Sarma, Jayasri (2018) Interaction of arsenic with gap junction protein connexin 43 alters gap junctional intercellular communication. In: BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 1865 (10). pp. 1423-1436.
Das, Rajdeep and Mitra, Amrita and Mitra, Gopa and Maity, Dibyajyoti and Bhat, Vijay and Pal, Debnath and Ross, Cecil and Kurpad, Anura V and Mandal, Amit Kumar (2018) Molecular insights of inhibition in sickle hemoglobin polymerization upon glutathionylation: hydrogen/deuterium exchange mass spectrometry and molecular dynamics simulation-based approach. In: BIOCHEMICAL JOURNAL, 475 (13). pp. 2153-2166.
Sheet, Tridip and Ghosh, Suvankar and Pal, Debnath and Banerjee, Raja (2017) Computational design of model scaffold for anion recognition based on the `(CNN)-N-alpha' motif. In: BIOPOLYMERS, 108 (1, SI).
Das, Sreetama and Bhadra, Pratiti and Ramakumar, Suryanarayanarao and Pal, Debnath (2017) Molecular Dynamics Information Improves cis-Peptide-Based Function Annotation of Proteins. In: JOURNAL OF PROTEOME RESEARCH, 16 (8). pp. 2936-2946.
Mukherjee, Shashi Bajaj and Datta, Debabrata and Raha, Soumyendu and Pal, Debnath (2017) Numerical simulation of a glucose sensitive composite membrane closed-loop insulin delivery system. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING, 40 (10). pp. 1453-1462.
Bhadra, Pratiti and Pal, Debnath (2017) Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield. In: COMPUTERS IN BIOLOGY AND MEDICINE, 83 . pp. 134-142.
Boda, Sunil Kumar and Pandit, Subhendu and Garai, Aditya and Pal, Debnath and Basu, Bikramjit (2016) Bacterial siderophore mimicking iron complexes as DNA targeting antimicrobials. In: RSC ADVANCES, 6 (45). pp. 39245-39260.
Das, Rajdeep and Mitra, Gopa and Mathew, Boby and Bhat, Vijay and Ross, Cecil and Pal, Debnath and Mandal, Amit Kumar (2016) Mass Spectrometry-Based Diagnosis of Hemoglobinopathies: A Potential Tool for the Screening of Genetic Disorder. In: BIOCHEMICAL GENETICS, 54 (6). pp. 816-825.
Reddi, Ravikumar and Singarapu, Kiran Kumar and Pal, Debnath and Addlagatta, Anthony (2016) The unique functional role of the C-H center dot center dot center dot S hydrogen bond in the substrate specificity and enzyme catalysis of type 1 methionine aminopeptidase. In: MOLECULAR BIOSYSTEMS, 12 (8). pp. 2408-2416.
Dubey, Abhinav and Rangarajan, Annapoorni and Pal, Debnath and Atreya, Hanudatta S (2015) Chemical Shifts to Metabolic Pathways: Identifying Metabolic Pathways Directly from a Single 2D NMR Spectrum. In: ANALYTICAL CHEMISTRY, 87 (24). pp. 12197-12205.
Das, Rajdeep and Muralidharan, Monita and Mitra, Gopa and Bhat, Vijay and Mathew, Boby and Pal, Debnath and Ross, Cecil and Mandal, Amit Kumar (2015) Mass spectrometry based characterization of Hb Beckman variant in a falsely elevated HbA(1c) sample. In: ANALYTICAL BIOCHEMISTRY, 489 . pp. 53-58.
Roy, Arnab and Varshney, Umesh and Pal, Debnath (2014) Avoiding acidic region streaking in two-dimensional gel electrophoresis: Case study with two bacterial whole cell protein extracts. In: JOURNAL OF BIOSCIENCES, 39 (4). pp. 631-642.
Bhadra, Pratiti and Pal, Debnath (2014) De novo inference of protein function from coarse-grained dynamics. In: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 82 (10). pp. 2443-2454.
Das, Sreetama and Ramakumar, Suryanarayanarao and Pal, Debnath (2014) Identifying functionally important cis-peptide containing segments in proteins and their utility in molecular function annotation. In: FEBS JOURNAL, 281 (24). pp. 5602-5621.
Raychaudhury, Chandan and Kandel, Durga D and Pal, Debnath (2014) Role of Vertex Index in Substructure Identification and Activity Prediction: A Study on Antitubercular Activity of a Series of Acid Alkyl Ester Derivatives. In: CROATICA CHEMICA ACTA, 87 (1). pp. 39-47.
Kandel, Durga Datta and Raychaudhury, Chandan and Pal, Debnath (2014) Two new atom centered fragment descriptors and scoring function enhance classification of antibacterial activity. In: JOURNAL OF MOLECULAR MODELING, 20 (4).
Raychaudhury, Chandan and Pal, Debnath (2013) Information content of molecular graph and prediction of gas phase thermal entropy of organic compounds. In: JOURNAL OF MATHEMATICAL CHEMISTRY, 51 (10). pp. 2718-2730.
Raychaudhury, Chandan and Pal, Debnath (2012) Use of Vertex Index in Structure-Activity Analysis and Design of Molecules. In: CURRENT COMPUTER-AIDED DRUG DESIGN, 8 (2). pp. 128-134.
Mitra, Pralay and Pal, Debnath (2011) PRUNE and PROBE-two modular web services for protein-protein docking. In: Nucleic Acids Research, 39 (2). W229-W234.
Mitra, Pralay and Pal, Debnath (2011) Using Correlated Parameters for Improved Ranking of Protein-Protein Docking Decoys. In: Journal of Computational Chemistry, 32 (5). pp. 787-796.
Mitra, Pralay and Pal, Debnath (2011) Combining Bayes Classification and Point Group Symmetry under Boolean Framework for Enhanced Protein Quaternary Structure Inference. In: Structure, 19 (3). pp. 304-312.
Mitra, Pralay and Pal, Debnath (2011) DockYard-a repository to assist modeling of protein-protein docking. In: Journal of Molecular Modeling, 17 (3). pp. 599-606.
Mitra, Anirban and Kesarwani, Anil K and Pal, Debnath and Nagaraja, Valakunja (2011) WebGeSTer DB-a transcription terminator database. In: Nucleic Acids Research, 39 (Suppl.). D129-D135.
Mitra, Pralay and Pal, Debnath (2010) New measures for estimating surface complementarity and packing at protein-protein interfaces. In: FEBS Letters, 584 (6). pp. 1163-1168.
Medrano-Soto, Arturo and Pal, Debnath and Eisenberg, David (2008) Inferring molecular function: contributions from functional linkages. In: Trends in Genetics, 24 (12). 587 -590.
Manikandan, Karuppasamy and Pal, Debnath and Ramakumar, Suryanarayanarao and Brener, Nathan E and Iyengar, Sitharama S and Seetharaman, Guna (2008) Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments. In: Genome Biology, 9 (3). R52.1-R52.18.
Tripathi, Pankaj and Pal, Debnath and Muniyappa, K (2007) Saccharomyces cerevisiae Hop1 Protein Zinc Finger Motif Binds to the Holliday Junction and Distorts the DNA Structure: Implications for Holliday Junction. In: Biochemistry, 46 (44). pp. 12530-12542.
Eisenberg, D and Strong, M and Kim, SM and Bowers, PM and Pal, Debnath and Terwilliger, TC (2006) Functional linkages can reveal protein complexes for structure determination. In: FASEB Journa, 20 (5, Par). A1336.
