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Padmanabhan, P and Raja, R and Dixit, NM (2020) Bistability in virus-host interaction networks underlies the success of hepatitis C treatments. [Book Chapter]
Sankhe, GD and Raja, R and Singh, DP and Bheemireddy, S and Rana, S and Athira, PJ and Dixit, NM and Saini, DK (2023) Sequestration of histidine kinases by non-cognate response regulators establishes a threshold level of stimulation for bacterial two-component signaling. In: Nature Communications, 14 (1).
Padmanabhan, P and Dixit, NM (2023) Modelling how increased Cathepsin B/L and decreased TMPRSS2 usage for cell entry by the SARS-CoV-2 Omicron variant may affect the efficacy and synergy of TMPRSS2 and Cathepsin B/L inhibitors. In: Journal of Theoretical Biology, 572 .
Vemparala, B and Parambathu, AV and Saini, DK and Dixit, NM (2022) An Evolutionary Paradigm Favoring Cross Talk between Bacterial Two-Component Signaling Systems. In: mSystems, 7 (6).
Barnabas, V and Kashyap, A and Raja, R and Newar, K and Rai, D and Dixit, NM and Mehra, S (2022) The Extent of Antimicrobial Resistance Due to Efflux Pump Regulation. In: ACS Infectious Diseases .
Chatterjee, B and Sandhu, HS and Dixit, NM (2022) Modeling recapitulates the heterogeneous outcomes of SARS-CoV-2 infection and quantifies the differences in the innate immune and CD8 T-cell responses between patients experiencing mild and severe symptoms. In: PLoS Pathogens, 18 (6).
James, A and Dixit, NM (2022) Transmitted HIV-1 is more virulent in heterosexual individuals than men-who-havesex-with-men. In: PLoS Pathogens, 18 (3).
Padmanabhan, P and Desikan, R and Dixit, NM (2022) Modeling how antibody responses may determine the efficacy of COVID-19 vaccines. In: Nature Computational Science, 2 (2). pp. 123-131.
Aggarwal, A and Naskar, S and Maroli, N and Gorai, B and Dixit, NM and Maiti, PK (2021) Mechanistic insights into the effects of key mutations on SARS-CoV-2 RBD-ACE2 binding. In: Physical Chemistry Chemical Physics, 23 (46). pp. 26451-26458.
Gorai, B and Sahoo, AK and Srivastava, A and Dixit, NM and Maiti, PK (2021) Concerted interactions between multiple gp41 trimers and the target cell lipidome may be required for HIV-1 entry. In: Journal of Chemical Information and Modeling . (In Press)
Nagaraja, P and Gopalan, BP and DaSouza, RR and Sarkar, D and Rajnala, N and Dixit, NM and Shet, A (2021) The within-host fitness of HIV-1 increases with age in ART-naïve HIV-1 subtype C infected children. In: Scientific Reports, 11 (1).
Waturuocha, UW and Krishna, MS and Malhotra, V and Dixit, NM and Saini, DK (2021) A Low-Prevalence Single-Nucleotide Polymorphism in the Sensor Kinase PhoR in Mycobacterium tuberculosis Suppresses Its Autophosphatase Activity and Reduces Pathogenic Fitness: Implications in Evolutionary Selection. In: Frontiers in Microbiology, 12 .
Desikan, R and Antia, R and Dixit, NM (2021) Physical �strength� of the multi-protein chain connecting immune cells: Does the weakest link limit antibody affinity maturation?: The weakest link in the multi-protein chain facilitating antigen acquisition by B cells in germinal centres limits antibody affinity maturation. In: BioEssays . (In Press)
Garg, AK and Mittal, S and Padmanabhan, P and Desikan, R and Dixit, NM (2021) Increased B Cell Selection Stringency In Germinal Centers Can Explain Improved COVID-19 Vaccine Efficacies With Low Dose Prime or Delayed Boost. In: Frontiers in Immunology, 12 .
Ansari, AF and Reddy, YBS and Raut, J and Dixit, NM (2021) An efficient and scalable top-down method for predicting structures of microbial communities. In: Nature Computational Science, 1 (9). pp. 619-628.
Padmanabhan, P and Desikan, R and Dixit, NM (2020) Targeting TMPRSS2 and Cathepsin B/L together may be synergistic against SARSCoV- 2 infection. In: PLoS Computational Biology, 16 (12).
Saha, A and Dixit, NM (2020) Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection. In: PLoS Computational Biology, 16 (11).
Agrawal, S and Bhandari, S and Bhattacharjee, A and Deo, A and Dixit, NM and Harsha, P and Juneja, S and Kesarwani, P and Swamy, AK and Patil, P and Rathod, N and Saptharishi, R and Shriram, S and Srivastava, P and Sundaresan, R and Vaidhiyan, NK and Yasodharan, S (2020) City-Scale Agent-Based Simulators for the Study of Non-pharmaceutical Interventions in the Context of the COVID-19 Epidemic: IISc-TIFR COVID-19 City-Scale Simulation Team. In: Journal of the Indian Institute of Science, 100 (4). pp. 809-847.
Desikan, R and Raja, R and Dixit, NM (2020) Early exposure to broadly neutralizing antibodies may trigger a dynamical switch from progressive disease to lasting control of SHIV infection. In: PLoS computational biology, 16 (8). e1008064.
Baral, S and Raja, R and Sen, P and Dixit, NM (2019) Towards multiscale modeling of the CD8 + T cell response to viral infections. In: Wiley Interdisciplinary Reviews: Systems Biology and Medicine .
Dixit, NM and Perelson, AS (2006) The metabolism, pharmacokinetics and mechanisms of antiviral activity of ribavirin against hepatitis C virus. In: Cellular and Molecular Life Sciences (CMLS), 63 (7-8). pp. 832-842.
Tiwari, A and Dixit, NM (2023) A physical tug-of-war and the evolution of immune cells. In: Journal of Biosciences, 48 (3).
