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Vasudev, Prema G and Banerjee, Mousumi and Ramakrishnan, C and Balaram, P (2012) Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins. In: Proteins: Structure, Function, and Genetics, 80 (4). pp. 991-1002.
Majumdar, Ritankar and Railkar, Reema and Dighe, Rajan R (2011) Docking and free energy simulations to predict conformational domains involved in hCG-LH receptor interactions using recombinant antibodies. In: Proteins: Structure, Function, and Genetics, 79 (11). pp. 3108-3122.
Indu, S and Kochat, V and Thakurela, S and Ramakrishnan, C and Varadarajan, Raghavan (2011) Conformational analysis and design of cross-strand disulfides in antiparallel beta-sheets. In: Proteins: Structure, Function, and Genetics, 79 (1). pp. 244-260.
Indu, S and Kumar, Senthil T and Thakurela, Sudhir and Gupta, Mansi and Bhaskara, Ramachandra M and Ramakrishnan, C and Varadarajan, Raghavan (2010) Disulfide conformation and design at helix N-termini. In: Proteins: Structure, Function, and Genetics, 78 (5). pp. 1228-1242.
Hansia,, Priti and Dev, Sagarika and Surolia, Avadhesha and Vishveshwara, Saraswathi (2007) Insight into the early stages of thermal unfolding of peanut agglutinin by molecular dynamics simulations. In: Proteins: Structure, Function, and Genetics, 69 (1). pp. 32-42.
Manikandan, K and Ramakumar, S (2004) The occurrence of C-H...O hydrogen bonds in alpha-helices and helix termini in globular proteins. In: Proteins: Structure, Function, and Genetics, 56 (4). pp. 768-781.
Singh, Kumar S and Babu, Madan M and Balaram, P (2003) Registering alpha-Helices and beta-Strands Using Backbone C-H…O Interactions. In: Proteins: Structure, Function, and Genetics, 51 (2). pp. 167-171.
Paul, Bindu D and Kanhere, Aditi and Chakraborty, Atanu and Bansal, Manju and Nagaraja, Valakunja (2003) Identification of the Domains for DNA Binding and Transactivation Function of C Protein from Bacteriophage Mu. In: Proteins: Structure, Function, and Genetics, 52 (2). pp. 272-282.
Datta, S and Ganesh, N and Chandra, Nagasuma R and Muniyappa, K and Vijayan, M (2003) Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition. In: Proteins: Structure, Function, and Genetics, 50 . pp. 474-485.
Pandit, Shashi B and Srinivasan, N (2003) Survey for G-Proteins in the Prokaryotic Genomes: Prediction of Functional Roles Based on Classification. In: Proteins: Structure, Function, and Genetics, 52 (4). pp. 585-597.
Prajapati, RS and Lingaraju, GM and Bacchawat, Kiran and Surolia, Avadhesha and Varadarajan, Raghavan (2003) Thermodynamic Effects of Replacements of Pro Residues in Helix Interiors of Maltose-Binding Protein. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 863-871.
Balaji, S and Aruna, S and Srinivasan, N (2003) Tolerance to the Substitution of Buried Apolar Residues by Charged Residues in the Homologous Protein Structures. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 783-791.
Eswar, Narayanan and Nagarajaram, HA and Ramakrishnan, C and Srinivasan, N (2002) Influence of Solvent Molecules on the Stereochemical Code of Glycyl Residues in Proteins. In: Proteins: Structure, Function, and Genetics, 49 (3). pp. 326-334.
Bharath, Srinivas MM and Chandra, Nagasuma R and Rao, MRS (2002) Prediction of an HMG-box fold in the C-terminal domain of histone H1: Insights into its role in DNA condensation. In: Proteins: Structure, Function, and Genetics, 49 (1). pp. 71-81.
Kannan, N and Selvaraj, S and Gromiha, Michael S and Vishveshwara, S (2001) Clusters in \alpha / \beta Barrel Proteins: Implications for Protein Structure, Function, and Folding: A Graph Theoretical Approach. In: Proteins: Structure, Function, and Genetics, 43 . pp. 103-112.
Madhusudhan, MS and Sanjeev, BS and Vishveshwara, S (2001) Computer Modeling and Molecular Dynamics Simulations of Ligand Bound Complexes of Bovine Angiogenin: Dinucleotide Topology at the Active Site of RNase A Family Proteins. In: Proteins: Structure, Function, and Genetics, 45 (1). pp. 30-39.
Madhusudhan, MS and Vishveshwara, S (2001) Computer Modeling of Human Angiogenin-Dinucleotide Substrate Interaction. In: Proteins: Structure, Function, and Genetics, 42 (1). pp. 125-135.
Ravishankar, R and Thomas, CJ and Suguna, K and Surolia, A and Vijayan, M (2001) Crystal Structures of the Peanut Lectin-Lactose Complex at Acidic pH: Retention of Unusual Quaternary Structure, Empty and Carbohydrate Bound Combining Sites, Molecular Mimicry and Crystal Packing Directed by Interactions at the Combining Site. In: Proteins: Structure, Function, and Genetics, 43 (3). pp. 260-270.
Ganesh, Raj PS and Chanda, Baron and Gupta, SK and Mathew, MK and Chandrasekhar, Jayaraman (2000) Modeling of Ion Permeation in Calcium and Sodium Channel Selectivity Filters. In: Proteins: Structure, Function, and Genetics, 38 (4). pp. 384-392.
Ramachandraiah, Gosu and Chandra, Nagasuma R (2000) Sequence and Structural Determinants of Mannose Recognition. In: Proteins: Structure, Function, and Genetics, 39 (4). pp. 358-364.
Nagendra, HG and Sukumar, N and Vijayan, M (1998) Role of water in plasticity, stability, and action of proteins: The crystal structures of lysozyme at very low levels of hydration. In: Proteins: Structure, Function, and Genetics, 32 (2). pp. 229-240.
Banavar, Jayanth R and Cieplak, Marek and Maritan, Amos and Nadig, Gautham and Seno, Flavio (1998) Structure-based design of model proteins. In: Proteins: Structure, Function, and Genetics, 31 (1). pp. 10-20.
Bhattacharjya, Surajit and Balaram, P (1997) Effects of Organic Solvents on Protein Structures: Observation of a Structured Helical Core in Hen Egg-White Lysozyme in Aqueous Dimethylsulfoxide. In: Proteins: Structure, Function, and Genetics, 29 (4). pp. 492-507.
Satyamurty, P and Hosur, MV and Misquith, S and Surolia, A and Kannan, KK (1994) Crystallization of a SCRIP-Gelonin Isolated From Plant Seeds Gelonium multiforum. In: Proteins: Structure, Function, and Genetics, 19 (4). pp. 340-342.
Sankararamakrishnan, R and Vishveshwara, Saraswathi (1993) Characterization of Proline-Containing a-Helix (Helix F Model of Bacteriorhodopsin) by Molecular Dynamics Studies. In: Proteins: Structure, Function, and Genetics, 15 (1). pp. 26-41.
Karle, Isabella L and Flippen-Anderson, Judith L and Sukumar, M and Balaram, P (1992) Helix Packing of Leucine-Rich Peptides: A Parallel Leucine Ladder in the Structure of Boc- Aib-Leu- Aib- Aib-Leu-Leu-Leu- Aib-Leu- Aib-OMe. In: Proteins: Structure, Function, and Genetics, 12 (4). pp. 324-330.
Karle, Isabella L and Flippen-Anderson, Judith L and Uma, K and Balaram, P (1990) Apolar Peptide Models for Conformational Heterogeneity, Hydration, and Packing of Polypeptide Helices: Crystal Structure of Hepta- and Octapeptides Containing \alpha-Aminoisobutyric Acid. In: Proteins: Structure, Function, and Genetics, 7 (1). pp. 62-73.
