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Rani, Phoolwanti and Nagaraja, Valakunja (2019) Genome-wide mapping of Topoisomerase I activity sites reveal its role in chromosome segregation. In: NUCLEIC ACIDS RESEARCH, 47 (3). pp. 1416-1427.
Ghosh, Meenakshi and Singh, Mahavir (2018) RGG-box in hnRNPA1 specifically recognizes the telomere G-quadruplex DNA and enhances the G-quadruplex unfolding ability of UP1 domain. In: NUCLEIC ACIDS RESEARCH, 46 (19). pp. 10246-10261.
Munshi, Sneha and Gopi, Soundhararajan and Asampille, Gitanjali and Subramanian, Sandhyaa and Campos, Luis A and Atreya, Hanudatta S and Naganathan, Athi N (2018) Tunable order-disorder continuum in protein-DNA interactions. In: NUCLEIC ACIDS RESEARCH, 46 (17). pp. 8700-8709.
Kumar, Sumith and Karmakar, Bipul C and Nagarajan, Deepesh and Mukhopadhyay, Asish K and Morgan, Richard D and Rao, Desirazu N (2018) N-4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori. In: NUCLEIC ACIDS RESEARCH, 46 (7). pp. 3429-3445.
Joshi, Himanshu and Maiti, Prabal K (2018) Structure and electrical properties of DNA nanotubes embedded in lipid bilayer membranes. In: NUCLEIC ACIDS RESEARCH, 46 (5). pp. 2234-2242.
Nirwal, Shivlee and Kulkarni, Dhananjaya S and Sharma, Amit and Rao, Desirazu N and Nair, Deepak T (2018) Mechanism of formation of a toroid around DNA by the mismatch sensor protein. In: NUCLEIC ACIDS RESEARCH, 46 (1). pp. 256-266.
Nath, Sarmi and Somyajit, Kumar and Mishra, Anup and Scully, Ralph and Nagaraju, Ganesh (2017) FANCJ helicase controls the balance between short- and long-tract gene conversions between sister chromatids. In: NUCLEIC ACIDS RESEARCH, 45 (15). pp. 8886-8900.
Katoch, Aanchal and George, Biju and Iyyappan, Amrutha and Khan, Debjit and Das, Saumitra (2017) Interplay between PTB and miR-1285 at the p53 3 ` UTR modulates the levels of p53 and its isoform Delta 40p53 alpha. In: NUCLEIC ACIDS RESEARCH, 45 (17). pp. 10206-10217.
Dave, Pratik and George, Biju and Sharma, Divya Khandige and Das, Saumitra (2017) Polypyrimidine tract-binding protein (PTB) and PTB-associated splicing factor in CVB3 infection: an ITAF for an ITAF. In: NUCLEIC ACIDS RESEARCH, 45 (15). pp. 9068-9084.
Nagamalleswari, Easa and Rao, Sandhya and Vasu, Kommireddy and Nagaraja, Valakunja (2017) Restriction endonuclease triggered bacterial apoptosis as a mechanism for long time survival. In: NUCLEIC ACIDS RESEARCH, 45 (14). pp. 8423-8434.
Shetty, Sunil and Shah, Riyaz A and Chembazhi, Ullas V and Sah, Shivjee and Varshney, Umesh (2017) Two highly conserved features of bacterial initiator tRNAs license them to pass through distinct checkpoints in translation initiation. In: NUCLEIC ACIDS RESEARCH, 45 (4). pp. 2040-2050.
Goutam, Kapil and Gupta, Arvind K and Gopal, Balasubramanian (2017) The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor sigma(J) modulates promoter recognition. In: NUCLEIC ACIDS RESEARCH, 45 (16). pp. 9760-9772.
Poornima, Gopalakrishna and Shah, Shanaya and Vignesh, Venkadasubramanian and Parker, Roy and Rajyaguru, Purusharth I (2016) Arginine methylation promotes translation repression activity of eIF4G-binding protein, Scd6. In: NUCLEIC ACIDS RESEARCH, 44 (19). pp. 9358-9368.
Ahmed, Wareed and Menon, Shruti and Karthik, Pullela VDNB and Nagaraja, Valakunja (2016) Autoregulation of topoisomerase I expression by supercoiling sensitive transcription. In: NUCLEIC ACIDS RESEARCH, 44 (4). pp. 1541-1552.
Somyajit, Kumar and Saxena, Sneha and Babu, Sharath and Mishra, Anup and Nagaraju, Ganesh (2015) Mammalian RAD51 paralogs protect nascent DNA at stalled forks and mediate replication restart. In: NUCLEIC ACIDS RESEARCH, 43 (20). pp. 9835-9855.
Mudgal, Richa and Sandhya, Sankaran and Kumar, Gayatri and Sowdhamini, Ramanathan and Chandra, Nagasuma R and Srinivasan, Narayanaswamy (2015) NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. In: NUCLEIC ACIDS RESEARCH, 43 (D1). D300-D305.
Seib, Kate L and Jen, Freda EC and Tan, Aimee and Scott, Adeana L and Kumar, Ritesh and Power, Peter M and Chen, Li-Tzu and Wu, Hsing-Ju and Wang, Andrew HJ and Hill, Dorothea MC and Luyten, Yvette A and Morgan, Richard D and Roberts, Richard J and Maiden, Martin CJ and Boitano, Matthew and Clark, Tyson A and Korlach, Jonas and Rao, Desirazu N and Jennings, Michael P (2015) Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N-6-adenine DNA methyltransferases of Neisseria meningitidis. In: NUCLEIC ACIDS RESEARCH, 43 (8). pp. 4150-4162.
Bhat, Prasanna and Shwetha, Shivaprasad and Sharma, Divya Khandige and Joseph, Agnel Praveen and Srinivasan, Narayanaswamy and Das, Saumitra (2015) The beta hairpin structure within ribosomal protein S5 mediates interplay between domains II and IV and regulates HCV IRES function. In: NUCLEIC ACIDS RESEARCH, 43 (5). pp. 2888-2901.
Sang, Pau Biak and Srinath, Thiruneelakantan and Patil, Aravind Goud and Woo, Eui-Jeon and Varshney, Umesh (2015) A unique uracil-DNA binding protein of the uracil DNA glycosylase superfamily. In: NUCLEIC ACIDS RESEARCH, 43 (17). pp. 8452-8463.
Ghosh, Soumitra and Mallick, Bratati and Nagaraja, Valakunja (2014) Direct regulation of topoisomerase activity by a nucleoid-associated protein. In: NUCLEIC ACIDS RESEARCH, 42 (17). pp. 11156-11165.
Pradhan, Shalmali Avinash and Rather, Mohammad Iqbal and Tiwari, Ankana and Bhat, Vishwanath Kumble and Kumar, Arun (2014) Evidence that TSC2 acts as a transcription factor and binds to and represses the promoter of Epiregulin. In: NUCLEIC ACIDS RESEARCH, 42 (10). pp. 6243-6255.
Kahramanoglou, Christina and Cortes, Teresa and Matange, Nishad and Hunt, Debbie M and Visweswariah, Sandhya S and Young, Douglas B and Buxton, Roger S (2014) Genomic mapping of cAMP receptor protein (CRPMt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor. In: NUCLEIC ACIDS RESEARCH, 42 (13). 8320-U108.
Le, Shimin and Chen, Hu and Zhang, Xinghua and Chen, Jin and Patil, Neelakanteshwar K and Muniyappa, Kalappa and Yan, Jie (2014) Mechanical force antagonizes the inhibitory effects of RecX on RecA filament formation in Mycobacterium tuberculosis. In: NUCLEIC ACIDS RESEARCH, 42 (19). pp. 11992-11999.
Surana, Parag and Satchidanandam, Vijaya and Nair, Deepak T (2014) RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state. In: NUCLEIC ACIDS RESEARCH, 42 (4). pp. 2758-2773.
Tan, Kuan Pern and Khare, Shruti and Varadarajan, Raghavan and Madhusudhan, Mallur Srivatsan (2014) TSpred: a web server for the rational design of temperature-sensitive mutants. In: NUCLEIC ACIDS RESEARCH, 42 (W1). W277-W284.
Rao, Desirazu N and Dryden, David TF and Bheemanaik, Shivakumara (2014) Type III restriction-modification enzymes: a historical perspective. In: NUCLEIC ACIDS RESEARCH, 42 (1). pp. 45-55.
Ahmed, Wareed and Bhat, Anuradha Gopal and Leelaram, Majety Naga and Menon, Shruti and Nagaraja, Valakunja (2013) Carboxyl terminal domain basic amino acids of mycobacterial topoisomerase I bind DNA to promote strand passage. In: NUCLEIC ACIDS RESEARCH, 41 (15). pp. 7462-7471.
Fu, Hongxia and Le, Shimin and Chen, Hu and Muniyappa, K and Yan, Jie (2013) Force and ATP hydrolysis dependent regulation of RecA nucleoprotein filament by single-stranded DNA binding protein. In: NUCLEIC ACIDS RESEARCH, 41 (2). pp. 924-932.
Iengar, Prathima (2012) An analysis of substitution, deletion and insertion mutations in cancer genes. In: NUCLEIC ACIDS RESEARCH, 40 (14). pp. 6401-6413.
Anand, Praveen and Yeturu, Kalidas and Chandra, Nagasuma (2012) PocketAnnotate: towards site-based function annotation. In: NUCLEIC ACIDS RESEARCH, 40 (W1). W400-W408.
Karambelkar, Shweta and Swapna, Ganduri and Nagaraja, Valakunja (2012) Silencing of toxic gene expression by Fis. In: NUCLEIC ACIDS RESEARCH, 40 (10). pp. 4358-4367.
Kumar, Rupesh and Riley, Jane E and Parry, Damian and Bates, Andrew D and Nagaraja, Valakunja (2012) Binding of two DNA molecules by type II topoisomerases for decatenation. In: NUCLEIC ACIDS RESEARCH, 40 (21). pp. 10904-10915.
