Graph theoretical descriptors differentiate D-Mannose isomers in the principal component proposed feature space: A computational approach

Dhanalakshmi, M and Sruthi, D and Das, K and Iqbal, M and Mohanan, VP and Dave, S and Muthulakshmi Andal, N (2024) Graph theoretical descriptors differentiate D-Mannose isomers in the principal component proposed feature space: A computational approach. In: Carbohydrate Research, 541 .

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Abstract

The intricate nature of carbohydrates, particularly monosaccharides, stems from the existence of several chiral centers within their tertiary structures. Predicting and characterizing the molecular geometries and electrostatic landscapes of these substances is difficult due to their complex electrical properties. Moreover, these structures can display a substantial degree of conformational flexibility due to the presence of many rotatable bonds. Moreover, identifying and distinguishing between D and L enantiomers of monosaccharides presents a significant analytical obstacle since there is a need for empirically measurable properties that can distinguish them. This work uses Principal Component Analysis (PCA) to explore the chemical information included in 3D descriptors in order to comprehend the conformational space of D-Mannose stereoisomers. The isomers may be discriminated by utilizing 3D matrix-based indices, geometrical descriptors, and RDF descriptors. The isomers can be distinguished by descriptors, such as the Harary-like index from the reciprocal squared geometrical matrix (HRG), Harary-like index from Coulomb matrix (HCoulomb), Wiener-like index from Coulomb matrix (WiCoulomb), Wiener-like index from geometrical matrix (WiG), Graph energy from Coulomb matrix (SpAbsCoulomb), Spectral absolute deviation from Coulomb matrix (SpADCoulomb), and Spectral positive sum from Coulomb matrix (SpPosCoulomb). Among these descriptors, the first two, HRG and HCoulomb, perform the best in differentiation among the 3D-Matrix-Based Descriptors (3D-MBD) class. The results obtained from this study provide a significant chemical insight into the structural characteristics of the compounds inside the graph theoretical framework. These findings are likely to serve as the basis for developing new methods for analytical experiments. © 2024 Elsevier Ltd

Item Type:	Journal Article
Publication:	Carbohydrate Research
Publisher:	Elsevier Ltd
Additional Information:	The copyright for this article belongs to Elsevier Ltd
Keywords:	Conformations; Geometry; Glucose; Graph theory; Isomers; Stereochemistry, 3d-matrix-based descriptor; Coulomb matrix; D-mannose; Descriptors; Graph-theoretical matrix; matrix; Monosaccharide; Principal-component analysis; Stereoisomer, Principal component analysis
Department/Centre:	Division of Biological Sciences > Biochemistry
Date Deposited:	28 Jul 2024 16:55
Last Modified:	28 Jul 2024 16:55
URI:	http://eprints.iisc.ac.in/id/eprint/85174

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