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As(3)p: A Fast Algorithm to Search Structurally Similar Protiens

Rohit, Satish and Akshaya, Ravichandran and Sabarinathan, Radhakrishnan and Vaishnavi, Marthandan Kirti and Sherlin, Durairaj and Gurusaran, Manickam and Sekar, Kanagaraj (2012) As(3)p: A Fast Algorithm to Search Structurally Similar Protiens. In: 8th International Conference on Intelligent Computing (ICIC), JUL 25-29, 2012 , Huangshan, PEOPLES R CHINA, pp. 166-173.

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Official URL: http://dx.doi.org/10.1007/978-3-642-31837-5_24


Protein structure comparison is essential for understanding various aspects of protein structure, function and evolution. It can be used to explore the structural diversity and evolutionary patterns of protein families. In view of the above, a new algorithm is proposed which performs faster protein structure comparison using the peptide backbone torsional angles. It is fast, robust, computationally less expensive and efficient in finding structural similarities between two different protein structures and is also capable of identifying structural repeats within the same protein molecule.

Item Type: Conference Proceedings
Series.: Communications in Computer and Information Science
Additional Information: Copyright for this article belongs to SPRINGER-VERLAG BERLIN, GERMANY
Keywords: protein structure comparison;protein structural fragments;C alpha angle;structural repeats
Department/Centre: Division of Interdisciplinary Sciences > Supercomputer Education & Research Centre
Date Deposited: 17 Dec 2012 06:00
Last Modified: 17 Dec 2012 06:00
URI: http://eprints.iisc.ac.in/id/eprint/45563

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