ePrints@IIScePrints@IISc Home | About | Browse | Latest Additions | Advanced Search | Contact | Help

Inefficient excision of uracil from loop regions of DNA oligomers by E.coli uracil DNA glycosylase

Kumar, NV and Varshney, U (1994) Inefficient excision of uracil from loop regions of DNA oligomers by E.coli uracil DNA glycosylase. In: Nucleic acids research, 22 (18). pp. 3737-3741.

Full text not available from this repository. (Request a copy)
Official URL: http://nar.oxfordjournals.org/content/22/18/3737


Kinetic parameters for uracil DNA glycosylase (E.coli)-catalysed excision of uracil from DNA oligomers containing dUMP in different structural contexts were determined. Our results show that single-stranded oligonucleotides (unstructured) are used as somewhat better substrates than the double-stranded oligonucleotides. This is mainly because of the favourable V-max value of the enzyme for single-stranded substrates. More interestingly, however, we found that uracil release from loop regions of DNA hairpins is extremely inefficient. The poor efficiency with which uracil is excised from loop regions is a result of both increased K-m and lowered V-max values. This observation may have significant implications in uracil DNA glycosylase-directed repair of DNA segments that can be extruded as hairpins. In addition, these studies are useful in designing oligonucleotides for various applications in DNA research where the use of uracil DNA glycosylase is sought.

Item Type: Journal Article
Publication: Nucleic acids research
Publisher: Oxford University Press
Additional Information: Copyright of this article belongs to Oxford University Press.
Department/Centre: Division of Mechanical Sciences > Chemical Engineering
Date Deposited: 24 May 2011 08:49
Last Modified: 28 Nov 2018 15:14
URI: http://eprints.iisc.ac.in/id/eprint/36547

Actions (login required)

View Item View Item