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Salamat, JM and Abbott, KL and Gill, KS and Flannery, PC and Biancardi, VC and Boothe, DM and Huang, C-CJ and Mani, S and Chandran, A and Vishveshwara, S and Onteru, SK and Dhanasekaran, M and Pondugula, SR (2021) Insights into Mechanisms and Models for Studying Neurological Adverse Events Mediated by Pharmacokinetic Interactions between Clinical Drugs and Illicit Substances of Herbal and Fungal Origin. [Book Chapter]
Gadiyaram, V and Dighe, A and Ghosh, S and Vishveshwara, S (2021) Network Re-Wiring During Allostery and Protein-Protein Interactions: A Graph Spectral Approach. [Book Chapter]
Vijayakumar, S and Vishveshwara, S and Ravishanker, G and Beveridge, DL (1994) Analysis of Hydrogen Bonding and Stability of Protein Secondary Structures in Molecular Dynamics Simulation. In: Symposium on Modeling the Hydrogen Bond, at the 206th National Meeting of the American-Chemical-Society, AUG 22-27, 1993, Chicago,IL,.
Subramanyan, V and Kirkpatrick, KL and Vishveshwara, S and Vishveshwara, S (2023) Are microtubules electron-based topological insulators? In: EPL, 143 (4).
Prabantu, VM and Gadiyaram, V and Vishveshwara, S and Srinivasan, N (2023) Comparison of structural networks across homologous proteins. In: Proteins: Structure, Function and Bioinformatics .
Halder, A and Anto, A and Subramanyan, V and Bhattacharyya, M and Vishveshwara, S and Vishveshwara, S (2020) Surveying the Side-Chain Network Approach to Protein Structure and Dynamics: The SARS-CoV-2 Spike Protein as an Illustrative Case. In: Frontiers in Molecular Biosciences, 7 .
Abbott, KL and Chaudhury, CS and Chandran, A and Vishveshwara, S and Dvorak, Z and Jiskrova, E and Poulikova, K and Vyhlidalova, B and Mani, S and Pondugula, SR (2019) Belinostat, at its clinically relevant concentrations, inhibits rifampicin-induced CYP3A4 and MDR1 gene expressions. In: Molecular Pharmacology, 95 (3). pp. 324-334.
Keasar, C and McGuffin, LJ and Wallner, B and Chopra, G and Adhikari, B and Bhattacharya, D and Blake, L and Bortot, LO and Cao, R and Dhanasekaran, BK and Dimas, I and Faccioli, RA and Faraggi, E and Ganzynkowicz, R and Ghosh, S and Ghosh, S and GieÅdoÅ, A and Golon, L and He, Y and Heo, L and Hou, J and Khan, M and Khatib, F and Khoury, GA and Kieslich, C and Kim, DE and Krupa, P and Lee, GR and Li, H and Li, J and Lipska, A and Liwo, A and Maghrabi, AHA and Mirdita, M and Mirzaei, S and Mozolewska, MA and Onel, M and Ovchinnikov, S and Shah, A and Shah, U and Sidi, T and Sieradzan, AK and Å�lusarz, M and Å�lusarz, R and Smadbeck, J and Tamamis, P and Trieber, N and Wirecki, T and Yin, Y and Zhang, Y and Bacardit, J and Baranowski, M and Chapman, N and Cooper, S and Defelicibus, A and Flatten, J and Koepnick, B and PopoviÄ�, Z and Zaborowski, B and Baker, D and Cheng, J and Czaplewski, C and Delbem, ACB and Floudas, C and Kloczkowski, A and OÅ�dziej, S and Levitt, M and Scheraga, H and Seok, C and Söding, J and Vishveshwara, S and Xu, D and Caglar, A and Coral, A and MacMillan, A and Lubow, A and Failer, B and Kestemont, B and Landers, CR and Painter, CR and Garnier, C and Sellin, C and Janz, D and Wheeler, DC and Simon, V and Flear, DM and Croze, E and McIlvaine, GV and Beecher, G and Lawrie, G and Ykman, G and Feldmann, H and Fuentes, HK and Terumasa, H and Kovanecz, I and Longino, III and Nijland, JH and Diderich, JA and Canfield, JM and Eriksson, J and Slone, JD and Appel, JG and Mitchell, J and Mitch, J and Loots-Boiy, J and Brownlee, JM and Wilson, K and Clayton, KT and Deford, KE and Abbey, KJ and Withers, L and Wei, L and Ives, L and Miller, LA and Carpenter, L and Sharma, MG and Ricci, M and Binfield, MS and Davids, MJ and Gaebel, M and Cassidy, MD and Fagiola, M and Pfützenreuter, M and Barlow, N and Triggiani, IV and Innes, RBM and Leduc, R and Dos Santos Gomes, RLC and Morneau, RLR and Zaccanelli, SJ and Kleinfelter, SC and Van Der Laan, TJA and Bausewein, T and George, TJ and Mikhail, V and Barmettler, W and Crivelli, SN (2018) An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. In: Scientific Reports, 8 (1).
Kells, G and Sen, D and Slingerland, JK and Vishveshwara, S (2014) Topological blocking in quantum quench dynamics. In: PHYSICAL REVIEW B, 89 (23).
Chatterjee, S and Ghosh, S and Vishveshwara, S (2013) Network properties of decoys and CASP predicted models: a comparison with native protein structures. In: Molecular BioSystems, 9 (7). pp. 1774-1788.
Brinda, KV and Vishveshwara, S (2005) A network representation of protein structures: Implications for protein stability. In: Biophysical Journal, 89 (6). pp. 4159-4170.
Sanjeev, BS and Vishveshwara, S (2005) Dynamics of the Native and the Ligand-bound Structures of Eosinophil Cationic Protein: Network of Hydrogen Bonds at the Catalytic Site. In: Journal of Biomolecular Structure & Dynamics, 22 (6). pp. 657-672.
Vishveshwara, S and Brinda, KV (2005) Network topology of protein structures. In: Abstracts Of Papers Of The American Chemical Society, 229 (1). U794-U794.
Koh, Sung K and Ananthasuresh, GK and Vishveshwara , S (2005) A Deterministic Optimization Approach to Protein Sequence Design Using Continuous Models. In: The International Journal of Robotics , 24 (2-3). pp. 109-130.
Sanjeev, BS and Vishveshwara, S (2004) Conformational Transitions in Eosinophil Cationic Protein: A Molecular Dynamics Study in Aqueous Environment. In: Journal of Biomolecular Structure and Dynamics, 22 (2). pp. 171-182.
Sanjeev, BS and Vishveshwara, S (2004) Protein–Water Interactions in Ribonuclease A and Angiogenin: A Molecular Dynamics Study. In: Proteins: Structure, Function, and Bioinformatics, 55 (4). pp. 915-923.
Sanjeev, BS and Vishveshwara, S (2002) Essential dynamics and sidechain hydrogen bond cluster studies on eosinophil cationic protein. In: European Physical Journal D (EPJ D), The - Atomic,Molecular and Optical Physics, 20 (3). pp. 601-608.
Brinda, KV and Kannan, N and Vishveshwara, S (2002) Analysis of homodimeric protein interfaces by graph-spectral methods. In: Protein Engineering, 15 (4). pp. 265-277.
Madhusudhan, MS and Vishveshwara, S (2001) Deducing Hydration Sites of a Protein from Molecular Dynamics Simulations. In: Journal of Biomolecular Structure & Dynamics, 19 (1). pp. 105-114.
Vishveshwara, S and Madhusudhana, MS and Maizel Jr, Jacob V (2001) Short-strong hydrogen bonds and a low barrier transition state for the proton transfer reaction in RNase A catalysis: a quantum chemical study. In: Biophysical Chemistry, 89 (2-3). pp. 105-117.
Madhusudhan, MS and Vishveshwara, S and Das, A and Kalra, P and Jayaram, B (2001) A molecular dynamics study based post facto free energy analysis of the binding of bovine angiogenin with UMP and CMP ligands. In: Indian Journal of Biochemistry & Biophysics, 38 (1-2). pp. 27-33.
Sanjeev, BS and Patra, SM and Vishveshwara, S (2001) Sequence design in lattice models by graph theoretical methods. In: Journal of Chemical Physics, 114 (4). pp. 1906-14.
Kannan, N and Selvaraj, S and Gromiha, Michael S and Vishveshwara, S (2001) Clusters in \alpha / \beta Barrel Proteins: Implications for Protein Structure, Function, and Folding: A Graph Theoretical Approach. In: Proteins: Structure, Function, and Genetics, 43 . pp. 103-112.
Madhusudhan, MS and Sanjeev, BS and Vishveshwara, S (2001) Computer Modeling and Molecular Dynamics Simulations of Ligand Bound Complexes of Bovine Angiogenin: Dinucleotide Topology at the Active Site of RNase A Family Proteins. In: Proteins: Structure, Function, and Genetics, 45 (1). pp. 30-39.
Madhusudhan, MS and Vishveshwara, S (2001) Computer Modeling of Human Angiogenin-Dinucleotide Substrate Interaction. In: Proteins: Structure, Function, and Genetics, 42 (1). pp. 125-135.
Kannan, N and Vishveshwara, S (2000) Aromatic clusters: a determinant of thermal stability of thermophilic proteins. In: Protein Engineering, 13 (11). pp. 753-761.
Kannan, N and Schneider, Thomas D and Vishveshwara, S (2000) Logos for amino-acid preferences in different backbone packing density regions of protein structural classes. In: Acta Crystallographica Section D, 56 (9). pp. 1156-1165.
Madhusudhan, MS and Vishveshwara, S (2000) Molecular dynamics simulations of modelled angiogenin-mononucleotide complexes. In: Current Science, 78 (7). pp. 852-857.
Patra, SM and Vishveshwara, S (2000) Backbone cluster identification in proteins by a graph theoretical method. In: Biophysical Chemistry, 84 (1). pp. 13-25.
Kannan, N and Vishveshwara, S (1999) Identification of side-chain clusters in protein structures by a graph spectral method. In: Journal of Molecular Biology, 292 (2). pp. 441-464.
Patra, SM and Vishveshwara, S (1999) Classification of Polymer Structures by Graph Theory. In: International Journal of Quantum Chemistry, 71 (4). pp. 349-356.
Madhusudhan, MS and Vishveshwara, S (1998) Modeling of angiogenin-3 '-NMP complex. In: Journal of Biomolecular Structure & Dynamics, 16 (3). pp. 715-722.
Shrivastava, I and Vishveshwara, S and Cieplak, Marek and Maritan, A and Banavar, JR (1995) Lattice model for rapidly folding protein-like heteropolymers. In: PNAS, 92 (20). pp. 9206-9209.
Seshadri , K and Rao , VS and Vishveshwara , S (1994) Characterization of substrate UpA binding to RNase A--computer modelling and energetics approach. In: Journal of biomolecular structure & dynamics, 12 (3). 581 -603 .
Seshadri, K and Vishveshwara, S and Jain, MK (1994) Binding of active site directed ligands to phospholipase A2: Implications on the molecular constraints and catalytic mechanism. In: Proceedings of the indian academy of sciences - chemical sciences, 106 (5). pp. 1177-1189.
Shobana, S and Nadig, G and Vishveshwara, S (1994) Effect of the valine-threonine constraint on the dynamics of the proline helix — A molecular dynamics study. In: Proceedings of the indian academy of sciences -chemical sciences, 106 (2). pp. 579-589.
Vijayakumar, S and Vishveshwara, S and Ravishanker, G and Beveridge, DL (1993) Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates. In: Biophysical Journal, 65 (6). pp. 2304-2312.
Seshadri, K and Balaji, PV and Rao, VS and Vishveshwara, S (1993) Computer modelling studies of ribonuclease A-pyrimidine nucleotide complexes. In: Journal of Biomolecular Structure & Dynamics, 11 (2). pp. 395-415.
Seshadri, K and Rao, VS and Vishveshwara, S (1992) Molecular dynamics studies on nucleoside 2',3'-cyclic phosphates. In: Journal of Biomolecular Structure & Dynamics, 9 (6). pp. 1253-1268.
Sankararamakrishnan, R and Vishveshwara, S (1992) The structures of bacteriorhodopsin with different retinal-Schiff base orientations--computer modeling and energy minimization studies. In: Journal of Biomolecular Structure & Dynamics, 9 (6). pp. 1073-1095.
Shobana, S and Vishveshwara, S (1991) Structure of valinomycin by molecular dynamics studies. In: Indian Journal of Biochemistry & Biophysics, 28 (5-6). 363-368 .
Kaliannan, P and Vishveshwara, S and Rao, VSR (1986) Anomeric effect in carbohydrates-an ab initio study on extended model systems. In: Proceedings of Indian Academy of Sciences: Chemical Sciences, 96 (5). pp. 327-339.
Kaliannan, P and Vishveshwara, S and Rao, VSR (1985) Anomeric Effect in Phosphate Moieties of Carbohydrates: An ab initio Study. In: International Journal of Quantum Chemistry, 27 (2). 181 -194.
Sreerama, N and Vishveshwara, S (1985) Studies involving electrostatic potential of valinomycin. In: Journal of Biosciences, 8 (1-2). 315 - 327.
Jeffrey, GA and Pople, JA and Binkley, JS and Vishveshwara, S (1978) Application of ab initio molecular orbital calculations to the structural moieties of carbohydrates. 3. In: Journal Of The American Chemical Society, 100 (2). pp. 373-379.
