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Bheemireddy, S and Srinivasan, N (2022) Computational Study on the Dynamics of Mycobacterium Tuberculosis RNA Polymerase Assembly. [Book Chapter]
Yazhini, A and Chakraborti, S and Srinivasan, N (2021) Protein Structure, Dynamics and Assembly: Implications for Drug Discovery. [Book Chapter]
Prabantu, VM and Yazhini, A and Srinivasan, N (2020) Manoeuvring protein functions and functional levels by structural excursions. [Book Chapter]
Chakraborti, S and Chakravarthi, P and Srinivasan, N (2020) A ligand-centric approach to identify potential drugs for repurposing: Case study with aurora kinase inhibitors. [Book Chapter]
Tandon, H and Vishwanath, S and Srinivasan, N (2020) Structural and dynamical aspects of evolutionarily conserved protein-protein complexes. [Book Chapter]
Chakraborti, S and Ramakrishnan, G and Srinivasan, N (2019) Repurposing Drugs Based on Evolutionary Relationships Between Targets of Approved Drugs and Proteins of Interest. [Book Chapter]
Chakraborti, S and Ramakrishnan, G and Srinivasan, N (2019) In Silico Modeling of FDA-Approved Drugs for Discovery of Anticandida Agents: A Drug-Repurposing Approach. [Book Chapter]
Lakshmi, B and Archunan, G and Srinivasan, N (2013) PROPENSITIES OF AMINO ACID RESIDUES IN PROTEINS FOR DIFFERENT REGIONS OF THE RAMACHANDRAN MAP. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 128-135.
Mohanty, Smita and Srinivasan, N (2009) How Effective Is The Data On Co-Occurrence Of Domains In Multi-Domain Proteins In Prediction Of Protein-Protein Interactions? In: 7th IEEE International Workshop on Genomic Signal Processing and Statistics, MAY 17-19, 2009, Minneapolis.
Sidhanta, SPD and Sowdhamini, R and Srinivasan, N (2023) Comparative analysis of permanent and transient domain–domain interactions in multi-domain proteins. In: Proteins: Structure, Function and Bioinformatics .
Prabantu, VM and Gadiyaram, V and Vishveshwara, S and Srinivasan, N (2023) Comparison of structural networks across homologous proteins. In: Proteins: Structure, Function and Bioinformatics .
Parvathy, J and Yazhini, A and Srinivasan, N and Sowdhamini, R (2023) Interfacial residues in protein�protein complexes are in the eyes of the beholder. In: Proteins: Structure, Function and Bioinformatics .
Prabantu, VM and Tandon, H and Sandhya, S and Sowdhamini, R and Srinivasan, N (2023) The alteration of structural network upon transient association between proteins studied using graph theory. In: Proteins: Structure, Function and Bioinformatics .
Bheemireddy, S and Sandhya, S and Srinivasan, N and Sowdhamini, R (2022) Computational tools to study RNA-protein complexes. In: Frontiers in Molecular Biosciences, 9 .
Naveenkumar, N and Prabantu, VM and Vishwanath, S and Sowdhamini, R and Srinivasan, N (2022) Structures of distantly related interacting protein homologs are less divergent than non-interacting homologs. In: FEBS Open Bio .
Paul, A and Subhadarshini, S and Srinivasan, N (2022) Pseudokinases repurpose flexibility signatures associated with the protein kinase fold for noncatalytic roles. In: Proteins: Structure, Function and Bioinformatics, 90 (3). pp. 747-764.
Ravikumar, A and Gopnarayan, MN and Subramaniam, S and Srinivasan, N (2022) Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography. In: IUCrJ, 9 . pp. 98-103.
Kalmankar, NV and Pavalam, M and Indrakumar, S and Srinivasan, N and Sowdhamini, R (2022) DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. In: Database : the journal of biological databases and curation, 2022 .
Manikandan, P and Sandhya, S and Nadig, K and Paul, S and Srinivasan, N and Rothweiler, U and Singh, M (2022) Identification, functional characterization, assembly and structure of ToxIN type III toxin-antitoxin complex from E. coli. In: Nucleic acids research, 50 (3). pp. 1687-1700.
Yazhini, A and Srinivasan, N and Sandhya, S (2022) Sequence Divergence and Functional Specializations of the Ancient Spliceosomal SF3b: Implications in Flexibility and Adaptations of the Multi-Protein Complex. In: Frontiers in Genetics, 12 .
Narwani, TJ and Srinivasan, N and Chakraborti, S (2021) NOD: a web server to predict New use of Old Drugs to facilitate drug repurposing. In: Scientific Reports, 11 (1).
Yazhini, A and Srinivasan, N and Sandhya, S (2021) Signatures of conserved and unique molecular features in Afrotheria. In: Scientific Reports, 11 (1).
Bheemireddy, S and Sandhya, S and Srinivasan, N (2021) Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins. In: Frontiers in Molecular Biosciences, 8 .
Chakraborti, S and Hatti, K and Srinivasan, N (2021) �All That Glitters Is Not Gold�: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses. In: International Journal of Molecular Sciences, 22 (13).
Chakraborti, S and Hatti, K and Srinivasan, N (2021) ‘All That Glitters Is Not Gold’: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses. In: International Journal of Molecular Sciences, 22 (13).
Craveur, P and Narwani, TJ and Srinivasan, N and Gelly, J-C and Rebehmed, J and De Brevern, AG (2021) Shaking the β-Bulges. In: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (1). pp. 14-18.
Chakraborti, S and Chakraborty, M and Bose, A and Srinivasan, N and Visweswariah, SS (2021) Identification of Potential Binders of Mtb Universal Stress Protein (Rv1636) Through an in silico Approach and Insights Into Compound Selection for Experimental Validation. In: Frontiers in Molecular Biosciences, 8 .
Tandon, H and de Brevern, AG and Srinivasan, N (2021) Transient association between proteins elicits alteration of dynamics at sites far away from interfaces. In: Structure, 29 (4). 371-384.e3.
Ravikumar, A and De Brevern, AG and Srinivasan, N (2021) Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility. In: Journal of Physical Chemistry B .
Prabantu, VM and Naveenkumar, N and Srinivasan, N (2021) Influence of Disease-Causing Mutations on Protein Structural Networks. In: Frontiers in Molecular Biosciences, 7 .
Khan, D and Ara, T and Ravi, V and Rajagopal, R and Tandon, H and Parvathy, J and Gonzalez, EA and Asirvatham-Jeyaraj, N and Krishna, S and Mishra, S and Raghu, S and Bhati, AS and Tamta, AK and Dasgupta, S and Kolthur-Seetharam, U and Etchegaray, J-P and Mostoslavsky, R and Rao, PSM and Srinivasan, N and Sundaresan, NR (2021) SIRT6 transcriptionally regulates fatty acid transport by suppressing PPARγ. In: Cell Reports, 35 (9).
Ravikumar, A and Srinivasan, N (2021) Hypervariability of accessible and inaccessible conformational space of proteins. In: Current Research in Structural Biology, 3 . pp. 229-238.
Yazhini, A and Sandhya, S and Srinivasan, N (2021) Rewards of divergence in sequences, 3-D structures and dynamics of yeast and human spliceosome SF3b complexes. In: Current Research in Structural Biology, 3 . pp. 133-145.
Janaki, C and Gowri, VS and Srinivasan, N (2021) Master Blaster: an approach to sensitive identification of remotely related proteins. In: Scientific Reports, 11 (1).
Maitra, A and Sarkar, MC and Raheja, H and Biswas, NK and Chakraborti, S and Singh, AK and Ghosh, S and Sarkar, S and Patra, S and Mondal, RK and Ghosh, T and Chatterjee, A and Banu, H and Majumdar, A and Chinnaswamy, S and Srinivasan, N and Dutta, S and Das, S (2020) Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility. In: Journal of Biosciences, 45 (1).
Chakraborti, S and Bheemireddy, S and Srinivasan, N (2020) Repurposing drugs against the main protease of SARS-CoV-2: Mechanism-based insights supported by available laboratory and clinical data. In: Molecular Omics, 16 (5). pp. 474-491.
Yazhini, A and Srinivasan, N (2020) How good are comparative models in the understanding of protein dynamics? In: Proteins: Structure, Function and Bioinformatics, 88 (7). pp. 874-888.
Uma Reddy, B and Tandon, H and Pradhan, MK and Adhikesavan, H and Srinivasan, N and Das, S and Jayaraman, N (2020) Potent HCV NS3 Protease Inhibition by a Water-Soluble Phyllanthin Congener. In: ACS Omega, 5 (20). pp. 11553-11562.
Aghera, NK and Prabha, J and Tandon, H and Chattopadhyay, G and Vishwanath, S and Srinivasan, N and Varadarajan, R (2020) Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase. In: Structure, 28 (5). 562-572.e4.
Kumar, G and Srinivasan, N and Sandhya, S (2020) Artificial protein sequences enable recognition of vicinal and distant protein functional relationships. In: Proteins: Structure, Function and Bioinformatics .
Paul, A and Srinivasan, N (2020) Genome-wide and structural analyses of pseudokinases encoded in the genome of Arabidopsis thaliana provide functional insights. In: Proteins: Structure, Function and Bioinformatics .
Faure, G and Joseph, AP and Craveur, P and Narwani, TJ and Srinivasan, N and Gelly, J-C and Rebehmed, J and De Brevern, AG (2019) IPBAvizu: A PyMOL plugin for an efficient 3D protein structure superimposition approach. In: Source Code for Biology and Medicine, 14 (1).
Kalaivani, R and Narwani, TJ and de Brevern, AG and Srinivasan, N (2019) Long-range molecular dynamics show that inactive forms of Protein Kinase A are more dynamic than active forms. In: PROTEIN SCIENCE, 28 (3). pp. 543-560.
Kannan, Y B and Saravanan, R and Srinivasan, N and Praveena, K and Sadhana, K (2017) Structural, Magnetic, Optical, and MEM Studies on Co-precipitated X Zn-0.4 Fe-0.6 O-2(4) (X = Co, Mn) Nanoferrite Particles. In: JOURNAL OF SUPERCONDUCTIVITY AND NOVEL MAGNETISM, 30 (9). pp. 2673-2682.
Kannan, YB and Saravanan, R and Srinivasan, N and Praveena, K and Sadhana, K (2016) Structural, magnetic and optical characterization of Ni0.8Zn0.2Fe2O4 nano particles prepared by co-precipitation method. In: PHYSICA B-CONDENSED MATTER, 502 . pp. 181-186.
Balamurugan, K and Bjorkhaug, L and Mahajan, S and Kanthimathi, S and Njolstad, PR and Srinivasan, N and Mohan, V and Radha, V (2016) Structure-function studies of HNF1A (MODY3) gene mutations in South Indian patients with monogenic diabetes. In: CLINICAL GENETICS, 90 (6). pp. 486-495.
Kannan, YB and Saravanan, R and Srinivasan, N and Praveena, K and Sadhana, K (2016) Synthesis and characterization of some ferrite nanoparticles prepared by co-precipitation method. In: JOURNAL OF MATERIALS SCIENCE-MATERIALS IN ELECTRONICS, 27 (11). pp. 12000-12008.
Lakshmi, B and Ramakrishnan, C and Archunan, G and Sowdhamini, R and Srinivasan, N (2014) Investigations of Ramachandran disallowed conformations in protein domain families. In: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 63 . pp. 119-125.
Rakshambikai, R and Srinivasan, N and Gadkari, Rupali A (2014) REPERTOIRE OF PROTEIN KINASES ENCODED IN THE GENOME OF ZEBRAFISH SHOWS REMARKABLY LARGE POPULATION OF PIM KINASES. In: JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 12 (1).
Ray, Upasana and Roy, Chaitrali L and Kumar, Anuj and Mani, Prashant and Joseph, Agnel P and Sudha, G and Sarkar, Debi P and Srinivasan, N and Das, Saumitra (2013) Inhibition of the Interaction Between NS3 Protease and HCV IRES With a Small Peptide: A Novel Therapeutic Strategy. In: MOLECULAR THERAPY, 21 (1). pp. 57-67.
Chawla, Bhavna and Kumar, Ravi Ranjan and Tyagi, Nidhi and Subramanian, Gowri and Srinivasan, N and Park, Myung Hee and Madhubala, Rentala (2012) A Unique Modification of the Eukaryotic Initiation Factor 5A Shows the Presence of the Complete Hypusine Pathway in Leishmania donovani. In: PLos One, 7 (3).
Sandhya, S and Mudgal, R and Jayadev, C and Abhinandan, KR and Sowdhamini, R and Srinivasan, N (2012) Cascaded walks in protein sequence space: use of artificial sequences in remote homology detection between natural proteins. In: MOLECULAR BIOSYSTEMS, 8 (8). pp. 2076-2084.
Rakshambikai, R and Yamunadevi, S and Anamika, K and Tyagi, N and Srinivasan, N (2012) Repertoire of Protein Kinases Encoded in the Genome of Takifugu rubripes. In: COMPARATIVE AND FUNCTIONAL GENOMICS, 2012 .
Joseph, Agnel Praveen and Srinivasan, N and de Brevern, Alexandre G (2011) Improvement of protein structure comparison using a structural alphabet. In: Biochimie, 93 (9). pp. 1434-1445.
Krishnadev, O and Srinivasan, N (2011) Prediction of protein-protein interactions between human host and a pathogen and its application to three pathogenic bacteria. In: International Journal of Biological Macromolecules, 48 (4). pp. 613-619.
Aggarwal, P and Dasgupta, M and Joseph, AP and Chatterjee, N and Srinivasan, N and Nath, U (2010) Identification of Specific DNA Binding Residues in the TCP Family of Transcription Factors in Arabidopsis. In: Plant Cell Online, The, 22 (4). pp. 1174-1189.
Chawla, Bhavna and Jhingran, Anupam and Singh, Sushma and Tyagi, Nidhi and Park, Myung Hee and Srinivasan, N and Roberts, Sigrid C and Madhubala, Rentala (2010) Identification and Characterization of a Novel Deoxyhypusine Synthase in Leishmania donovani. In: Journal of biological chemistry, 285 (1). pp. 453-463.
Mookiah, P and Rajesh, K and Narasimhamurthy, T and Vijayakumar, V and Srinivasan, N (2009) Ethyl 4-(3-hydroxyphenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate. In: Acta Crystallographica Section E, 65 (Part 11). O2664-U2876.
Kumar, Anujith and Reddy, Surendranath and Srinivasan, N and Nandi, Dipankar (2009) Interaction Between Two Residues in the Inter-Domain Interface of Escherichia coli Peptidase N Modulates Catalytic Activity. In: Protein and Peptide Letters, 16 (4). pp. 415-422.
Gadkari, Rupali A and Varughese, Deepthi and Srinivasan, N (2009) Recognition of Interaction Interface Residues in Low-Resolution Structures of Protein Assemblies Solely from the Positions of C alpha Atoms. In: PLoS ONE, 4 (2).
Anamika, K and Abhinandan, KR and Deshmukh, K and Srinivasan, N (2009) Classification of Nonenzymatic Homologues of Protein Kinases. In: Comparative and Functional Genomics, 2009 . pp. 1-7.
Thangudu, Ratna R and Manoharan, Malini and Srinivasan, N and Cadet, Frederic and Sowdhamini, R and Offmann, Bernard (2008) Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. In: BMC Structural Biology, 8 .
Anamika, K and Bhattacharya, A and Srinivasan, N (2008) Analysis of the protein kinome of Entamoeba histalytica. In: Proteins: Structure, Function, and Bioinformatics, 71 (2). pp. 995-1006.
Tyagi, M and de Brevern, AG and Srinivasan, N and Offmann, B (2008) Protein structure mining using a structural alphabet. In: Proteins: Structure, Function, and Bioinformatics, 71 (2). pp. 920-937.
Srinivasan, N and Prasad, YVRK and Rao, P Rama (2008) Hot deformation behaviour of Mg–3Al alloy—A study using processing map. In: Materials Science and Engineering A, 476 (1-2). pp. 146-156.
Tina, KG and Bhadra, R and Srinivasan, N (2007) PIC: Protein Interactions Calculator. In: Nucleic Acids Research, 35 (5). pp. 473-476.
Gowri, VS and Anamika, K and Gore, S and Srinivasan, N (2007) Analysis on sliding helices and strands in protein structural comparisons: A case study with protein kinases. In: Journal of Biosciences, 32 (5). pp. 921-928.
Anamika, K and Srinivasan, N (2007) Comparative Kinomics of Plasmodium Organisms: Unity in Diversity. In: Protein and Peptide Letters, 14 (6). pp. 509-517.
Gowri, VS and Tina, KG and Krishnadev, O and Srinivasan, N (2007) Strategies for the Effective Identification of Remotely Related Sequences in Multiple PSSM Search Approach. In: Proteins: Structure, Function, and Bioinformatics, 67 (4). 789 -794.
Balaji, S and Srinivasan, N (2007) Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution. In: Journal of Biosciences, 32 (1). pp. 83-96.
Srinivasan, N and Sowdhamini, R and Bhattacharya, Alok (2007) Computational biology: More than just a set of techniques. In: Journal of Biosciences, 32 (1). pp. 1-2.
Thangudu, Ratna R and Sharma, Priyanka and Srinivasan, N and Offmann, Bernard (2007) Analycys: A Database for Conservation and Conformation of Disulphide Bonds in Homologous Protein Domains. In: Proteins: Structure, Function, and Bioinformatics, 67 (2). pp. 255-261.
Ramakrishnan, C and Lakshmi, B and Kurien, A and Devipriya, D and Srinivasan, N (2007) Structural compromise of disallowed conformations in Peptide and protein structures. In: Protein Peptide Letters, 14 (7). pp. 672-682.
Krupa, A and Anamika, * and Srinivasan, N (2006) Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa. In: Gene, 380 (1). pp. 1-13.
Bhadra, R and Sandhya, S and Abhinandan, KR and Chakrabarti, Sandip and Sowdhamini, R and Srinivasan, N (2006) Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. In: Nucleic Acids Research, 34 (Sp. Is). W143-W146.
Pugalenthi, G and Shameer, K and Srinivasan, N and Sowdhamini, R (2006) HARMONY: a server for the assessment of protein structures. In: Nucleic Acids Research, 34 (Sp. Is). W231-W234.
Tyagi, M and Sharma, P and Swamy, CS and Cadet, F and Srinivasan, N and de Brevern, AG and Offmann, B (2006) Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. In: Nucleic Acids Research, 34 (Sp. Is). W119-W123.
Pugalenthi, G and Shameer, K and Srinivasan, N and Sowdhamini, R (2006) HARMONY: a server for the assessment of protein structures. In: Nucleic Acids Research, 34 . W231-W234.
Mahesha, HG and Singh, Sandeep B and Srinivasan, N and Rao, AGA (2006) A spectroscopic study of the interaction of isoflavones with human serum albumin. In: FEBS Journal, 273 (3). pp. 451-467.
Sandhya, S and Chakrabarti, S and Abhinandan, KR and Sowdhamini, R and Srinivasan, N (2005) Assessment of a rigorous transitive profile based search method to detect remotely similar proteins. In: Journal of Biomolecular Structure & Dynamics, 23 (3). pp. 283-298.
Krupa, A and Srinivasan, N (2005) Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes. In: Bmc Genomics, 6 (129).
De, Subhajyoti and Krishnadev, O and Srinivasan, N and Rekha, N (2005) Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different. In: BMC Structural Biology, 5 . pp. 1-16.
Krishnadev, O and Rekha, N and Pandit, SB and Abhiman, Saraswathi and Mohanty, S and Swapna, LS and Gore, S and Srinivasan, N (2005) PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. In: Nucleic Acids Research, 33 (Web Se). W126-W129.
Gadkari, RA and Roy, S and Rekha, N and Srinivasan, N and Dighe, RR (2005) Identification of a heterodimer-specific epitope present in human chorionic gonadotrophin (hCG) using a monoclonal antibody that can distinguish between hCG and human LH. In: Journal of Molecular Endocrinology, 34 (3). pp. 879-887.
Anand, B and Gowri, VS and Srinivasan, N (2005) Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. In: Bioinformatics, 21 (12). pp. 2821-2826.
Anamika, * and Srinivasan, N and Krupa, A (2005) A Genomic Perspective of Protein Kinases in Plasmodium falciparum. In: Proteins, 58 (1). pp. 180-189.
Rekha, N and Machado, SM and Narayanan, C and Krupa, A and Srinivasan, N (2004) Interaction Interfaces of Protein Domains Are Not Topologically Equivalent Across Families Within Superfamilies: Implications for Metabolic and Signaling Pathways. In: Proteins: Structure, Function, and Bioinformatics, 58 (2). pp. 339-353.
Anand, B and Namboori, S and Sandhya, S and Srinivasan, N (2004) Influence of protein structural similarities in adding value to genome data. In: Indian Journal of Biotechnology, 3 (4). pp. 473-485.
Mahajan, A and Sharma, A and Chavali, S and Kabra, M and Chowdhury, MR and Srinivasan, N and Bharadwaj, D (2004) Novel missense mutation in the coagulation factor IX catalytic domain associated with severe haemophilia B- Factor $IX_{Delhi}$. In: Haemophilia, 10 (5). pp. 550-552.
Krupa, A and Preethi, G and Srinivasan, N (2004) Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases. In: Journal of Molecular Biology, 339 (5). pp. 1025-1039.
Pandit, SB and Balaji, S and Srinivasan, N (2004) Structural and Functional Characterization of Gene Products Encoded in the Human Genome by Homology Detection. In: IUBMB Life (International Union of Biochemistry and Molecular Biology: Life), 56 (6). pp. 317-331.
Pandit, Shashi B and Bhadra, Rana and Gowri, VS and Balaji, S and Anand, B and Srinivasan, N (2004) SUPFAM: A database of sequence superfamilies of protein domains. In: BMC Bioinformatics, 5 . pp. 1-5.
Singh, Sunanda R and Rekha, Nambudiry and Pillai, Beena and Singh, Vijender and Naorem, Aruna and Sampath, Vinaya and Srinivasan, N and Sadhale, Parag (2004) Domainal organization of the lower eukaryotic homologs of the yeast RNA polymerase II core subunit Rpb7 reflects functional conservation. In: Nucleic Acids Research, 32 (1). pp. 201-210.
Krupa, A and Abhinandan, KR and Srinivasan, N (2004) KinG: a database of protein kinases in genomes. In: Nucleic Acids Research, 32 . D153-D155.
Pandit, Shashi B and Srinivasan, N (2004) Identification and Analysis of a New Family of Bacterial Serine Proteinases. In: In Silico Biology, 4 (4). pp. 563-572.
Shenoy, Avinash R and Sivakumar, K and Krupa, A and Srinivasan, N and Visweswariah, Sandhya S (2004) A survey of nucleotide cyclases in Actinobacteria: unique domain organization and expansion of the class III cyclase family in Mycobacterium tuberculosis. In: Comparative and Functional Genomics, 5 (1). pp. 17-38.
Sampath, Vinaya and Rekha, Nambudiry and Srinivasan, N and Sadhale, Parag (2003) The Conserved and Non-conserved Regions of Rpb4 Are Involved in Multiple Phenotypes in Saccharomyces cerevisiae. In: The Journal of Biological Chemistry, 278 (51). pp. 51566-51576.
Sandhya, S and Kishore, S and Sowdhamini, R and Srinivasan, N (2003) Effective detection of remote homologues by searching in sequence dataset of a protein domain fold. In: FEBS Letters, 552 (2-3). pp. 225-230.
Shenoy, Avinash R and Srinivasan, N and Subramaniam, M and Visweswariah, Sandhya S (2003) Mutational analysis of the Mycobacterium tuberculosis Rv1625c adenylyl cyclase: residues that confer nucleotide specificity contribute to dimerization. In: FEBS Letters, 545 (2-3). pp. 253-259.
Eswar, Narayanan and Ramakrishnan, C and Srinivasan, N (2003) Stranded in isolation: structural role of isolated extended strands in proteins. In: Protein Engineering, 16 (5). pp. 331-339.
Sopory, Shailaja and Balaji, S and Srinivasan, N and Visweswariah, Sandhya S (2003) Modeling and mutational analysis of the GAF domain of the cGMP-binding, cGMP-specific phosphodiesterase, PDE5. In: FEBS Letters, 539 (1-3). pp. 161-166.
Rahaman, Abdur and Srinivasan, N and Shamala, N and Shaila, MS (2003) The Fusion Core Complex of the Peste des Petits Ruminants Virus is a Six-helix Bundle Assembly. In: Biochemistry, 42 (4). pp. 922-931.
Gowri, V S and Pandit, Shashi B and Karthik, P S and Srinivasan, N and Balaji, S (2003) Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. In: Nucleic Acids Research, 31 (1). pp. 486-488.
Pandit, Shashi B and Srinivasan, N (2003) Survey for G-Proteins in the Prokaryotic Genomes: Prediction of Functional Roles Based on Classification. In: Proteins: Structure, Function, and Genetics, 52 (4). pp. 585-597.
Balaji, S and Aruna, S and Srinivasan, N (2003) Tolerance to the Substitution of Buried Apolar Residues by Charged Residues in the Homologous Protein Structures. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 783-791.
Krupa, A and Srinivasan, N (2002) Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. In: Protein Science, 11 (6). pp. 1580-1584.
Shenoy, Avinash R and Srinivasan, N and Visweswariah, Sandhya S (2002) The ascent of nucleotide cyclases: conservation and evolution of a theme. In: Journal of Biosciences, 27 (2). pp. 85-91.
Pandit, Shashi B and Gosar, Dilip and Abhiman, Saraswathi and Sujatha, S and Dixit, Sayali S and Mhatre, Natasha S and Sowdhamini, R and Srinivasan, N (2002) SUPFAM—a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. In: Nucleic Acids Research, 30 (1). pp. 289-293.
Eswar, Narayanan and Nagarajaram, HA and Ramakrishnan, C and Srinivasan, N (2002) Influence of Solvent Molecules on the Stereochemical Code of Glycyl Residues in Proteins. In: Proteins: Structure, Function, and Genetics, 49 (3). pp. 326-334.
Krupa, A and Srinivasan, N (2002) The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations. In: Genome Biology, 3 (12). 0066.1.
Bhandari, Rashna and Srinivasan, N and Mahaboobi, * and Ghanekar, Yashoda and Suguna, K and Visweswariah, Sandhya S (2001) Functional Inactivation of the Human Guanylyl Cyclase C Receptor: Modeling and Mutation of the Protein Kinase-like Domain. In: Biochemistry, 40 (31). 9196 -9206.
Sujatha, S and Balaji, S and Srinivasan, N (2001) PALI: a database of alignments and phylogeny of homologous protein structures. In: Bioinformatics, 17 (4). pp. 375-376.
Balaji, S and Srinivasan, N (2001) Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins. In: Protein Engineering, 14 (4). pp. 219-226.
Deam, S and Srinivasan, N and Westby, J and Horn, EH and Dolan, G (2001) F X Nottingham and F X Taunton two novel mutations in factor X resulting in loss of functional activity and an interpretation using molecular modelling. In: Thrombosis And Haemostasis, 85 (29). pp. 265-269.
Balaji, S and Sujatha, S and Chetan Kumar, Sai S and Srinivasan, N (2001) PALI—a database of Phylogeny and ALIgnment of homologous protein structures. In: Nucleic Acids Research, 29 (1). pp. 61-65.
Vijayachandra, K and Guruprasad, M and Bhandari, Rashna and Manjunath, UH and Somesh, BP and Srinivasan, N and Suguna, K and Visweswariah, Sandhya S (2000) Biochemical characterization of the intracellular domain of the human guanylyl cyclase C receptor provides evidence for a catalytically active homotrimer. In: Biochemistry, 39 (51). pp. 16075-16083.
Vijayachandra, K and Guruprasad, M and Bhandari, Rashna and Manjunath, UH and Somesh, BP and Srinivasan, N and Suguna, K and Visweswariah, Sandhya S (2000) Biochemical Characterization of the Intracellular Domain of the Human Guanylyl Cyclase C Receptor Provides Evidence for a Catalytically Active Homotrimer. In: Biochemistry, 39 (51). pp. 16075-16083.
Lindsey-Boltz, Laura A and Chawla, Geetanjali and Srinivasan, N and Vijeyraghavan, Usha and Mariano, A and Garica-Blanco, * (2000) The carboxy terminal WD domain of the pre-mRNA splicing factor Prp17p is critical for function. In: RNA, 6 (9). pp. 1289-1305.
Srinivasan, N and Antonelli, Marcelo and Jacob, Germaine and Korn, Iris and Jedlicki, Ana and Dhanaraj, V and Sayed, Muhammed FR and Blundell, Tom L and Allende, Catherine C and Allende, Jorge E (1999) Structural interpretation of site-directed mutagenesis and specificity of the catalytic subunit of protein kinase CK2 using comparative modelling. In: Protein Engineering, 12 (2). pp. 119-127.
Ramakrishnan, C and Srinivasan, N and Nataraj, DV (1996) Motifs and conformational analysis of amino acid residues adjoining beta-turns in proteins. In: International Journal of Peptide And Protein Research, 48 (05). pp. 420-428.
Natraj, DV and Srinivasan, N and Sowdhamini, R and Ramakrishnan, C (1995) Alpha-Turns In Protein Structures. In: Current Science, 69 (5). pp. 434-447.
Srinivasan, N and Prasad, YVRK (1995) Hot working characteristics of nimonic 75, 80A and 90 superalloys: a comparison using processing maps. In: Journal of Materials Processing Technlogy, 51 (1-4). pp. 171-192.
Srinivasan, N and Prasad, YVRK (1994) Microstructural control in hot working of IN-718 superalloy using processing map. In: Metallurgical and Materials Transactions A, 25 (10). pp. 2275-2284.
Srinivasan, N and Prasad, YVRK (1994) Microstructural control in hot working of IN-718 superalloy using processing map. In: Metallurgical and Materials Transactions A, 25 (10). 2275 -2284 .
Srinivasan, N and Anuradha, VS and Ramakrishnan, C and Sowdhamini, R and Balaram, P (1994) Conformational characteristics of asparaginyl residues in proteins. In: International Journal of Peptide & Protein Research, 24 (2). pp. 112-122.
Srinivasan, N and Prasad, YVRK (1994) Processing map for hot working of Ni–16Cr–8Fe alloy (IN 600). In: Materials Science and Technology, 10 (5). 377-383 .
Srinivasan, N and Prasad, YVRK (1994) Hot-working characteristics of nichrome and the development of a processing map. In: Journal of Materials Processing Technology, 41 (4). pp. 409-424.
Srinivasan, N and Prasad, YVRK (1992) Influence of sulfur on the processing map for hot working of nickel. In: Scripta Metallurgica et Materialia, 27 (3). pp. 309-312.
Srinivasan, N and Prasad, YVRK (1992) Characterisation of dynamic recrystallisation in nickel using processing map for hot deformation. In: Materials Science and Technology, 8 (3). pp. 206-212.
Sowdhamini, R and Srinivasan, N and Ramakrishnan, C and Balaram, P (1992) Orthogonal beta-beta motifs in proteins. In: Journal of Molecular Biology, 223 (4). pp. 845-851.
Srinivasan, N and Sowdhamini, Ramanathan and Ramakrishnan, Chandrashekharan and Balaram, Padmanabhan (1991) Analysis of short loops connecting secondary structural elements in proteins. In: Molecular Conformation and Biological Interactions . pp. 59-73.
Srinivasan, N and Sowdhamini, R and Ramakrishnan, C and Balaram, P (1990) Conformations of disulfide bridges in proteins. In: International Journal of Peptide and Protein Research, 36 (2). pp. 147-155.
Ramakrishnan, C and Srinivasan, N (1990) Glycyl residues in proteins and peptides:an analysis. In: Current Science, 59 (17-18). pp. 851-862.
Sowdhamini, R and Srinivasan, N and Shoichet, Brian and Santi, Daniel V and Ramakrishnan, C and Balaram, P (1989) Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis. In: Protein Engineering, 3 (2). pp. 95-103.
Ramakrishnan, C and Srinivasan, N and Prashanth, D (1987) Conformation of glycyl residues in globular proteins. In: International Journal of Peptide & Protein Research, 29 (5). pp. 629-637.
Srinivasan, N and Mudgal, R and Kumar, G and Chandra, NR and Sowdhamini, R and Sandhya, S (2015) Bridging the islands of protein families in sequence space using artificial sequences. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (1). pp. 103-104.
Selot, Ruchita and Balakrishnan, Balaji and Cheemadan, Sabna and Govindarajan, Sudha and Gadkari, Rupali and Srinivasan, N and Jayandharan, Giridhara R (2015) Successful Gene Transfer in Passively Immunized Mice With Immunologically-Inert AAVrh.10 Vectors. In: MOLECULAR THERAPY, 23 (1). S179.
Sen, Dwaipayan and Gadkari, Rupali A and Sudha, Govindarajan and Gabriel, Nishanth and Ramya, V and Nair, Sukesh C and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara R (2013) A novel adeno-associated virus serotype (AAV)-8 capsid mutant improves human coagulation factor IX expression in vivo. In: Molecular Therapy, 21 (1). S47-S47.
Sen, Dwaipayan and Kalaivani, V and Gadkari, Rupali and Sudha, G and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara R (2013) Multiple molecular alterations in phosphodegrons 1-3 within AAV2 capsid demonstrates higher hepatic gene transfer efficiency. In: Molecular Therapy, 21 (1). S206-S207.
Gabriel, Nishanth and Duraiswamy, Ramya and Gadkari, Rupali A and Govindarajan, Sudha and Ramakrishna, Banumathi and Srivastava, Arun and Srinivasan, N and Srivastava, Alok and Jayandharan, Giridhara Rao (2012) Targeted Mutagenesis of Ubiquitin-Binding Lysine Residues on the Adeno-Associated Virus (AAV)2 Capsid Improves Its Transduction Efficiency. In: Molecular Therapy, 20 (1). p. 146.
