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Kumar, Gayatri and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2022) Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Gaps: Implications in Distant Homology Detection. [Book Chapter]
Tandon, Himani and Sharma, Arun and Wadhwa, Saruchi and Varadarajan, Raghavan and Singh, Ramandeep and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2019) Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (23). pp. 9048-9063.
Tandon, Himani and Sharma, Arun and Sandhya, Sankaran and Srinivasan, Narayanaswamy and Singh, Ramandeep (2019) Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair. In: SCIENTIFIC REPORTS, 9 .
Tandon, Himani and Sharma, Arun and Sandhya, Sankaran and Srinivasan, Narayanaswamy and Singh, Ramandeep (2019) Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair. In: SCIENTIFIC REPORTS, 9 .
Sandhya, Sankaran and Maulik, Aditi and Giri, Malyasree and Singh, Mahavir (2018) Domain architecture of BAF250a reveals the ARID and ARM-repeat domains with implication in function and assembly of the BAF remodeling complex. In: PLOS ONE, 13 (10).
Kumar, Gayatri and Mudgal, Richa and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2018) Use of designed sequences in protein structure recognition. In: BIOLOGY DIRECT, 13 .
Sandhya, Sankaran and Mudgal, Richa and Kumar, Gayatri and Sowdhamini, Ramanathan and Srinivasan, Narayanaswamy (2016) Protein sequence design and its applications. In: CURRENT OPINION IN STRUCTURAL BIOLOGY, 37 . pp. 71-80.
Bin Masood, Talha and Sandhya, Sankaran and Chandra, Nagasuma and Natarajan, Vijay (2015) CHEXVIS: a tool for molecular channel extraction and visualization. In: BMC BIOINFORMATICS, 16 .
Mudgal, Richa and Sandhya, Sankaran and Chandra, Nagasuma and Srinivasan, Narayanaswamy (2015) De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods. In: BIOLOGY DIRECT, 10 .
Mudgal, Richa and Sandhya, Sankaran and Kumar, Gayatri and Sowdhamini, Ramanathan and Chandra, Nagasuma R and Srinivasan, Narayanaswamy (2015) NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. In: NUCLEIC ACIDS RESEARCH, 43 (D1). D300-D305.
Mudgal, Richa and Sowdhamini, Ramanathan and Chandra, Nagasuma and Srinivasan, Narayanaswamy and Sandhya, Sankaran (2014) Filling-in Void and Sparse Regions in Protein Sequence Space by Protein-Like Artificial Sequences Enables Remarkable Enhancement in Remote Homology Detection Capability. In: JOURNAL OF MOLECULAR BIOLOGY, 426 (4). pp. 962-979.
Pentakota, Satya Krishna and Sandhya, Sankaran and Sikarwar, Arun P and Chandra, Nagasuma and Rao, Manchanahalli Satyanarayana R (2014) Mapping Post-translational Modifications of Mammalian Testicular Specific Histone Variant TH2B in Tetraploid and Haploid Germ Cells and Their Implications on the Dynamics of Nucleosome Structure. In: JOURNAL OF PROTEOME RESEARCH, 13 (12). pp. 5603-5617.
Sandhya, Sankaran and Pankaj, Barah and Govind, Madabosse Kande and Offmann, Bernard and Srinivasan, Narayanaswamy and Sowdhamini, Ramanathan (2008) CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations. In: BMC Structural Biology, 8 (28).
