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Number of items: 60.

Conference Proceedings

Mahendra, Ankit and Peyron, Ivan and Thaunat, Olivier and Dollinger, Cecile and Gilardin, Laurent and Sharma, Meenu and Wootla, Bharath and Rao, Desirazu N and Padiolleau-Lefevre, Severine and Boquet, Didier and More, Abhijit and Varadarajan, Navin and Kaveri, Srini and Legendre, Christophe and Lacroix-Desmazes, Sebastien (2016) Generation of catalytic antibodies is an intrinsic property of an individual's immune system: a study on a large cohort of renal transplant patients. In: Annual Meeting of the American-Association-of-Immunologists (AAI), MAY 13-17, 2016, Seattle, WA.

Journal Article

Prasad, Yedu and Kumar, Ritesh and Chaudhary, Awanish Kumar and Dhanaraju, Rajkumar and Majumdar, Soneya and Rao, Desirazu N (2019) Kinetic and catalytic properties of M.HpyAXVII, a phase-variable DNA methyltransferase from Helicobacter pylori. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 294 (3). pp. 1019-1034.

Kumar, Sumith and Karmakar, Bipul C and Nagarajan, Deepesh and Mukhopadhyay, Asish K and Morgan, Richard D and Rao, Desirazu N (2018) N-4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori. In: NUCLEIC ACIDS RESEARCH, 46 (7). pp. 3429-3445.

Nirwal, Shivlee and Kulkarni, Dhananjaya S and Sharma, Amit and Rao, Desirazu N and Nair, Deepak T (2018) Mechanism of formation of a toroid around DNA by the mismatch sensor protein. In: NUCLEIC ACIDS RESEARCH, 46 (1). pp. 256-266.

Urulangodi, Madhusoodanan and Dhanaraju, Rajkumar and Gupta, Kanchan and Roy, Rajendra P and Bujnicki, Janusz M and Rao, Desirazu N (2016) Asymmetric DNA methylation by dirneric EcoP15I DNA methyltransferase. In: BIOCHIMIE, 128 . pp. 70-82.

Mahendra, Ankit and Peyron, Ivan and Thaunat, Olivier and Dollinger, Cecile and Gilardin, Laurent and Sharma, Meenu and Wootla, Bharath and Rao, Desirazu N and Padiolleau-Lefevre, Severine and Boquet, Didier and More, Abhijit and Varadarajan, Navin and Kaveri, Srini V and Legendre, Christophe and Lacroix-Desmazes, Sebastien (2016) Generation of Catalytic Antibodies Is an Intrinsic Property of an Individual's Immune System: A Study on a Large Cohort of Renal Transplant Patients. In: JOURNAL OF IMMUNOLOGY, 196 (10). pp. 4075-4081.

Damke, Prashant P and Dhanaraju, Rajkumar and Marsin, Stephanie and Radicella, Pablo J and Rao, Desirazu N (2016) Mutations in the nucleotide binding and hydrolysis domains of Helicobacter pylori MutS2 lead to altered biochemical activities and inactivation of its in vivo function. In: BMC MICROBIOLOGY, 16 .

Damke, Prashant P and Dhanaraju, Rajkumar and Marsin, Stephanie and Radicella, Pablo J and Rao, Desirazu N (2016) Mutations in the nucleotide binding and hydrolysis domains of helicobacter pylori MutS2 lead to altered biochemical activities and inactivation of its in vivo function (vol 16, 14, 2016). In: BMC MICROBIOLOGY, 19 (1).

Dwivedi, Gajendradhar R and Srikanth, Kolluru D and Anand, Praveen and Naikoo, Javed and Srilatha, NS and Rao, Desirazu N (2015) Insights into the Functional Roles of N-Terminal and C-Terminal Domains of Helicobacter pylori DprA. In: PLOS ONE, 10 (7).

Seib, Kate L and Jen, Freda EC and Tan, Aimee and Scott, Adeana L and Kumar, Ritesh and Power, Peter M and Chen, Li-Tzu and Wu, Hsing-Ju and Wang, Andrew HJ and Hill, Dorothea MC and Luyten, Yvette A and Morgan, Richard D and Roberts, Richard J and Maiden, Martin CJ and Boitano, Matthew and Clark, Tyson A and Korlach, Jonas and Rao, Desirazu N and Jennings, Michael P (2015) Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N-6-adenine DNA methyltransferases of Neisseria meningitidis. In: NUCLEIC ACIDS RESEARCH, 43 (8). pp. 4150-4162.

Damke, Prashant P and Dhanaraju, Rajkumar and Marsin, Stephanie and Radicella, Juan Pablo and Rao, Desirazu N (2015) The nuclease activities of both the Smr domain and an additional LDLK motif are required for an efficient anti-recombination function of Helicobacter pyloriMutS2. In: MOLECULAR MICROBIOLOGY, 96 (6). pp. 1240-1256.

Thakur, Roshan Singh and Desingu, Ambika and Basavaraju, Shivakumar and Subramanya, Shreelakshmi and Rao, Desirazu N and Nagaraju, Ganesh (2014) Mycobacterium tuberculosis DinG Is a Structure-specific Helicase That Unwinds G4 DNA IMPLICATIONS FOR TARGETING G4 DNA AS A NOVEL THERAPEUTIC APPROACH. In: JOURNAL OF BIOLOGICAL CHEMISTRY, 289 (36). pp. 25112-25136.

Rao, Desirazu N and Dryden, David TF and Bheemanaik, Shivakumara (2014) Type III restriction-modification enzymes: a historical perspective. In: NUCLEIC ACIDS RESEARCH, 42 (1). pp. 45-55.

Mahendra, Ankit and Sharma, Meenu and Rao, Desirazu N and Peyron, Ivan and Planchais, Cyril and Dimitrov, Jordan D and Kaveri, Srini V and Lacroix-Desmazes, Sebastien (2013) Antibody-mediated catalysis: Induction and therapeutic relevance. In: Autoimmunity Reviews, 12 (6). pp. 648-652.

Dwivedi, Gajendradhar R and Sharma, Eshita and Rao, Desirazu N (2013) Helicobacter pylori DprA alleviates restriction barrier for incoming DNA. In: Nucleic Acids Research, 41 (5). pp. 3274-3288.

Kumar, Ritesh and Mukhopadhyay, Asish K and Ghosh, Prachetash and Rao, Desirazu N (2012) Comparative Transcriptomics of H. pylori Strains AM5, SS1 and Their hpyAVIBM Deletion Mutants: Possible Roles of Cytosine Methylation. In: PLOS ONE, 7 (8).

Sharma, Ruchika and Rao, Desirazu N (2012) Functional characterization of UvrD helicases from Haemophilus influenzae and Helicobacter pylori. In: FEBS JOURNAL, 279 (12). pp. 2134-2155.

Kumar, Ritesh and Sabareesh, Varatharajan and Mukhopadhyay, Asish K and Rao, Desirazu N (2012) Mutations in hpyAVIBM, C5 cytosine DNA methyltransferase from Helicobacter pylori result in relaxed specificity. In: FEBS Journal, 279 (6). pp. 1080-1092.

Raghavendra, Nidhanapati K and Bheemanaik, Shivakumara and Rao, Desirazu N (2012) Mechanistic insights into type III restriction enzymes. In: Frontiers in Bioscience, 17 . pp. 1094-1107.

Banerjee, Arun and Rao, Desirazu N (2011) Functional Analysis of an Acid Adaptive DNA Adenine Methyltransferase from Helicobacter pylori 26695. In: PLos One, 6 (2).

Namadurai, Sivakumar and Jain, Deepti and Kulkarni, Dhananjay S and Tabib, Chaitanya R and Friedhoff, Peter and Rao, Desirazu N and Nair, Deepak T (2010) The C-Terminal Domain of the MutL Homolog from Neisseria gonorrhoeae Forms an Inverted Homodimer. In: PLoS One, 5 (10).

Kumar, Ritesh and Mukhopadhyay, Asish K and Rao, Desirazu N (2010) Characterization of an N6 adenine methyltransferase from Helicobacter pylori strain 26695 which methylates adjacent adenines on the same strand. In: FEBS Journal, 277 (7). pp. 1666-1683.

Yadav, Vijay Pal and Mandal, Prabhat Kumar and Rao, Desirazu N and Bhattacharya, Sudha (2009) Characterization of the restriction enzyme-like endonuclease encoded by the Entamoeba histolytica non-long terminal repeat retrotransposon EhLINE1. In: Febs journal, 276 (23). pp. 7070-7082.

Duppatla, Viswanadham and Bodda, Chiranjeevi and Urbanke, Claus and Friedhoff, Peter and Rao, Desirazu N (2009) The C-terminal domain is sufficient for endonuclease activity of Neisseria gonorrhoeae MutL. In: Biochemical Journal, 423 (Part 2). pp. 265-277.

Wootla, Bharath and Mahendra, Ankit and Dimitrov, Jordan D and Friboulet, Alain and Borel-Derlon, Annie and Rao, Desirazu N and Uda, Taizo and Borg, Jeanne-Yvonne and Bayry, Jagadeesh and Kaveri, Srinivas V and Lacroix-Desmazes, Sebastien (2009) Factor VIII-hydrolyzing IgG in acquired and congenital hemophilia. In: FEBS Letters, 583 (15). pp. 2565-2572.

Kranthi, Balla Venkata and Kumar, Ritesh and Kumar, Nallani Vijay and Rao, Desirazu N and Rangarajan, Pundi N (2009) Identification of key DNA elements involved in promoter recognition by Mxr1p, a master regulator of methanol utilization pathway in Pichia pastoris. In: Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1789 (6-8). pp. 460-468.

Sharma, Ruchika and Rao, Desirazu N (2009) Orchestration of Haemophilus influenzae RecJ Exonuclease by Interaction with Single-Stranded DNA-Binding Protein. In: Journal Of Molecular Biology, 385 (5). pp. 1375-1396.

Jois, Prashanth S and Madhu, Nagaraj and Rao, Desirazu N (2008) Role of histidine residues in EcoP15I DNA methyltransferase activity as probed by chemical modification and site-directed mutagenesis. In: Biochemical Journal, 410 . pp. 543-553.

Kumar, Ritesh and Srivastava, Richa and Singh, Ramendra Kumar and Surolia, Avadhesha and Rao, Desirazu N (2008) Activation and inhibition of DNA methyltransferases by S-adenosyl-$L$-homocysteine analogues. In: Bioorganic & Medicinal Chemistry, 16 (5). pp. 2276-2285.

Sivapriya, Kirubakaran and Suguna, Perumal and Banerjee, Arun and Saravanan, Vadivelu and Rao, Desirazu N and Chandrasekaran, Srinivasan (2007) Facile one-pot synthesis of thio and selenourea derivatives: A new class of potent urease inhibitors. In: Bioorganic & Medicinal Chemistry Letters, 17 (22). pp. 6387-6391.

Crampton, Neal and Roes, Stefanie and Dryden, David TF and Rao, Desirazu N and Edwardson, J Michael and Henderson, Robert M (2007) DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes. In: EMBO Journal, 26 (16). 3815 -3825.

Bist, Pradeep and Madhusoodanan, Urulangodi Kunhiraman and Rao, Desirazu N (2007) A Mutation in the Mod Subunit of EcoP15I Restriction Enzyme Converts the DNA Methyltransferase to a Site-specific Endonuclease. In: Journal of Biological Chemistry, 282 (6). pp. 3520-3530.

Bheemanaik, Shivakumara and Reddy, Yeturu VR and Rao, Desirazu N (2006) Structure, function and mechanism of exocyclic DNA methyltransferases. In: Biochemical Journal, 399 (2). pp. 177-190.

Joseph, Nimesh and Duppatlaa, Viswanadham and Rao, Desirazu N (2006) Prokaryotic DNA Mismatch Repair. In: Progress in Nucleic Acid Research and Molecular Biology, 81 . pp. 1-49.

Lee, Jae Young and Chang, Judy and Joseph, Nimesh and Ghirlando, Rodolfo and Rao, Desirazu N and Yang, Wei (2005) MutH Complexed with Hemi- and Unmethylated DNAs: Coupling Base Recognition and DNA Cleavage. In: Molecular Cell, 20 (1). pp. 155-166.

Raghavendra, Nidhanapati K and Rao, Desirazu N (2005) Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP151 - Usefulness in SAGE. In: Biochemical and Biophysical Research Communications, 334 (3). pp. 803-811.

Joseph, Nimesh and Duppatla, Viswanadham and Rao, Desirazu N (2005) Functional characterization of the DNA mismatch binding protein MutS from Haemophilus influenzae. In: Biochemical and Biophysical Research Communications, 334 (3). pp. 891-900.

Saravanan, Matheshwaran and Bujnicki, Janusz M and Cymerman, Iwona A and Rao, Desirazu N and Nagaraja, Valakunja (2004) Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily. In: Nucleic Acids Research, 32 (20). pp. 6129-6135.

Raghavendra, Nidhanapati K and Rao, Desirazu N (2004) Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme. In: Nucleic Acids Research, 32 (19). pp. 5703-5711.

Joseph, Nimesh and Sawarkar, Ritwick and Rao, Desirazu N (2004) DNA mismatch correction in Haemophilus influenzae:characterization of MutL, MutH and their interaction. In: DNA Repair, 3 . pp. 1561-1577.

Joseph, Nimesh and Sawarkar, Ritwick and Rao, Desirazu N (2004) DNA mismatch correction in Haemophilus influenzae: characterization of MutL, MutH and their interaction. In: DNA Repair, 3 (12). pp. 1561-1577.

Sistla, Srivani and Rao, Desirazu N (2004) S-Adenosyl-L-methionine-Dependent Restriction Enzymes. In: Critical Reviews in Biochemistry and Molecular Biology, 39 (1). pp. 1-19.

Sistla, Srivani and Krishnamurthy, Vinita and Rao, Desirazu N (2004) Single-stranded DNA binding and methylation by EcoP1I DNA methyltransferase. In: Biochemical and Biophysical Research Communications, 314 (1). pp. 159-165.

Bist, Pradeep and Rao, Desirazu N (2003) Identification and Mutational Analysis of $Mg^{2+}$ Binding Site in EcoP15I DNA Methyltransferase. In: The Journal of Biological Chemistry, 278 (43). pp. 41837-41848.

Raghavendra, Nidhanapathi K and Rao, Desirazu N (2003) Functional cooperation between exonucleases and endonucleases: basis for the evolution of restriction enzymes. In: Nucleic Acids Research, 31 (7). pp. 1888-1896.

Bheemanaik, Shivakumara and Chandrashekaran, Siddamadappa and Nagaraja, Valakunja and Rao, Desirazu N (2003) Kinetic and Catalytic Properties of Dimeric KpnI DNA Methyltransferase. In: Journal of Biological Chemistry, 278 (10). pp. 7863-7874.

Roberts, Richard J and Belfort, Marlene and Bestor, Timothy and Bhagwat, Ashok S and Bickle, Thomas A and Bitinaite, Jurate and Blumenthal, Robert M and Degtyarev, Sergey Kh and Dryden, David TF and Dybvig, Kevin and Firmang, Keith and Gromova, Elizaveta S and Gumport, Richard I and Halford, Stephen E and Hattman, Stanley and Heitman, Joseph and Hornby, David P and Janulaitis, Arvydas and Jeltsch, Albert and Josephsen, Jytte and Kiss, Antal and Klaenhammer, Todd R and Kobayashi, Ichizo and Kong, Huimin and Kruger, Detlev H and Lacks, Sanford and Marinus, Martin G and Miyahara, Michiko and Morgan, Richard D and Murray, Noreen E and Nagaraja, Valakunja and Piekarowicz, Andrzej and Pingoud, Alfred and Raleigh, Elisabeth and Rao, Desirazu N and Reich, Norbert and Repin, Vladimir E and Selker, Eric U and Shaw, Pang-Chui and Stein, Daniel C and Stoddard, Barry L. and Szybalski, Waclaw and Trautner, Thomas A and Van Etten, James L. and Vitor, Jorge MB and Wilson, Geoffrey G and Xu, Shuang-yong (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. In: Nucleic Acids Research, 31 (7). pp. 1805-1812.

Sankpal, Umesh T and Rao, Desirazu N (2002) Mutational analysis of conserved residues in HhaI DNA methyltransferase. In: Nucleic-Acids-Research, 30 (12). pp. 2628-2638.

Swaminathan, Chittoor P and Sankpal, Umesh T and Rao, Desirazu N and Surolia, Avadhesha (2002) Water-assisted dual mode cofactor recognition by HhaI DNA methyltransferase. In: Journal of Biological Chemistry, 277 (6). pp. 4042-4049.

Sankpal, Umesh T and Rao, Desirazu N (2002) Structure, function, and mechanism of HhaI DNA methyltransferases. In: Critical Reviews in Biochemistry and Molecular Biology, 37 (3). pp. 167-197.

Bist, Pradeep and Sistla, Srivani and Krishnamurthy, Vinita and Acharya, Asha and Chandrakala, Basavannachar and Rao, Desirazu N (2001) S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes. In: Journal of Molecular Biology, 310 (1). pp. 93-109.

Reddy, Yeturu VR and Rao, Desirazu N (2000) Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence. In: Journal of Molecular Biology, 298 (4). pp. 597-610.

Rao, Desirazu N and Saha, Swati and Krishnamurthy, Vinita (2000) ATP-dependent restriction enzymes. In: Progress in Nucleic Acid Research and Molecular Biology, 64 . pp. 1-63.

Reddy, Yeturu VR and Rao, Desirazu N (1998) Probing the role of cysteine residues in the EcoP15I DNA methyltransferase. In: Journal of Biological Chemistry, 273 (37). 23866 -23876.

Saha, Swati and Rao, Desirazu N (1997) Mutations in the Res subunit of the EcoPI restriction enzyme that affect ATP-dependent reactions. In: Journal of Molecular Biology, 269 (3). pp. 342-354.

Ahmad, Ishtiyaque and Rao, Desirazu N (1996) Functional analysis of conserved motifs in EcoP15I DNA methyltransferase. In: Journal of Molecular Biology, 259 (2). pp. 229-240.

Ahmad, Ishtiyaque and Krishnamurthy, Vinita and Rao, Desirazu N (1995) DNA recognition by the EcoP15I and EcoPI modification methyltransferases. In: Gene, 157 (1-2). pp. 143-147.

Saha, Swati and Rao, Desirazu N (1995) ATP hydrolysis is required for DNA cleavage by EcoPI restriction enzyme. In: Journal of Molecular Biology, 247 (4). pp. 559-567.

Editorials/Short Communications

Crampton, Neal and Roes, Stefanie and Rao, Desirazu N and Edwardson, Michael and Dryden, David and Henderson, Robert M (2007) AFM imaging reveals that the architecture of DNA loops produced by. In: Biophysical Journal . 184A-184A.

Ahmad, Ishtiyaque and Rao, Desirazu N (1994) Photolabeling of the EcoP15 DNA methyltransferase with S-adenosyl-l-methionine. In: Gene, 142 (1). pp. 67-71.

This list was generated on Fri Mar 29 03:16:43 2024 IST.