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Number of items: 63.

Santoshi, M and Engleng, B and Eligar, SM and Ratnakar, IS and Nagamalleshwari, E and Nagaraja, V (2023) Identification and characterization of a new HNH restriction endonuclease with unusual properties. In: Applied Microbiology and Biotechnology, 107 (20). 6263 -6275.

Biswas, P and Sengupta, S and Nagaraja, V (2023) Evolution of YacG to safeguard DNA gyrase from external perturbation. In: Research in Microbiology, 174 (7).

Ahmad, E and Mitra, A and Ahmed, W and Mahapatra, V and Hegde, SR and Sala, C and Cole, ST and Nagaraja, V (2023) Rho-dependent transcription termination is the dominant mechanism in Mycobacterium tuberculosis. In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1866 (2).

Faheem, I and Gupta, R and Nagaraja, V (2023) Distinct subunit architecture and assembly pattern of DNA gyrase from mycobacteria. In: Molecular Microbiology .

Ahmad, E and Mahapatra, V and Vanishree, VM and Nagaraja, V (2022) Intrinsic and Rho-dependent termination cooperate for efficient transcription termination at 3’ untranslated regions. In: Biochemical and Biophysical Research Communications, 628 . pp. 123-132.

Udupa, S and Nagaraja, V and Karambelkar, S (2022) Binding Affinity Quantifications of the Bacteriophage Mu DNA Modification Protein Mom Using Microscale Thermophoresis (MST). In: Bio-protocol, 12 (14).

Pulusu, CP and Manivannan, B and Raman, SS and Singh, S and Khamari, B and Lama, M and Peketi, ASK and Datta, C and Prasad, KN and Nagaraja, V and Pradeep, BE (2022) Localized outbreaks of Pseudomonas aeruginosa belonging to international high-risk clones in a south Indian hospital. In: Journal of medical microbiology, 71 (3).

Nagaraja, V and Singh, PR (2022) Challenges in elucidating bacteria-host epigenetic dynamics. In: Epigenomics, 14 (2). pp. 69-72.

Chanakya, PP and Khamari, B and Lama, M and Peketi, ASK and Kumar, P and Nagaraja, V and Bulagonda, EP (2021) Complete genome sequence of an extensively drug resistant (XDR) M. morganii SMM01 isolated from a patient with urinary and fecal incontinence. In: BMC Genomic Data, 22 (1).

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe�4S cluster and regulates Fe�S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe–4S cluster and regulates Fe–S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .

Lama, M and Chanakya, PP and Khamari, B and Peketi, ASK and Kumar, P and Muddu, GK and Nagaraja, V and Bulagonda, EP (2021) Genomic analysis of a multidrug-resistant Brucella anthropi strain isolated from a 4-day-old neonatal sepsis patient. In: Journal of Global Antimicrobial Resistance, 26 . pp. 227-229.

Garg, R and Anand, C and Ganguly, S and Rao, S and Verma, R and Nagaraja, V (2021) Direct Interaction of Polar Scaffolding Protein Wag31 with Nucleoid-Associated Protein Rv3852 Regulates Its Polar Localization. In: Cells, 10 (6).

Pulusu, CP and Khamari, B and Lama, M and Peketi, ASK and Kumar, P and Nagaraja, V and Bulagonda, EP (2021) Draft genome sequence of pandrug-resistant Pseudomonas aeruginosa SPA03, Isolated from a patient with benign prostatic hyperplasia. In: Microbiology Resource Announcements, 10 (22).

Lama, M and Chanakya, PP and Khamari, B and Peketi, ASK and Kumar, P and Nagaraja, V and Bulagonda, EP (2021) Genomic and phylogenetic analysis of a multidrug-resistant Burkholderia contaminans strain isolated from a patient with ocular infection. In: Journal of Global Antimicrobial Resistance, 25 . pp. 323-325.

Nagaraja, V and Narayana, C and Aggarwal, S and Mondal, S and Siddhanta, S and Bharat, E and Nagamalleswari, E (2021) Divalent ion-induced switch in dna cleavage of kpni endonuclease probed through surface-enhanced raman spectroscopy. In: Journal of Physical Chemistry B, 125 (9). pp. 2241-2250.

Anand, C and Santoshi, M and Singh, PR and Nagaraja, V (2021) Rv0802c is an acyltransferase that succinylates and acetylates mycobacterium tuberculosis nucleoid-associated protein hu. In: Microbiology (United Kingdom), 167 (7).

Ahmad, E and Hegde, SR and Nagaraja, V (2020) Revisiting intrinsic transcription termination in mycobacteria: U-tract downstream of secondary structure is dispensable for termination. In: Biochemical and Biophysical Research Communications, 522 (1). pp. 226-232.

Garg, R and Borbora, SM and Bansia, H and Rao, S and Singh, P and Verma, R and Balaji, KN and Nagaraja, V (2020) Mycobacterium tuberculosis Calcium Pump CtpF Modulates the Autophagosome in an mTOR-Dependent Manner. In: Frontiers in Cellular and Infection Microbiology, 10 .

Franch, O and Gutiérrez-Corbo, C and Domínguez-Asenjo, B and Boesen, T and Jensen, PB and Nejsum, LN and Keller, JG and Nielsen, SP and Singh, PR and Jha, RK and Nagaraja, V and Balaña-Fouce, R and Ho, Y-P and Reguera, RM and Knudsen, BR (2020) DNA flowerstructure co-localizes with human pathogens in infected macrophages. In: Nucleic Acids Research, 48 (11). pp. 6081-6091.

Jha, RK and Udupa, S and Rai, AK and Rani, P and Singh, PR and Govind, S and Nagaraja, V (2020) Conditional down-regulation of GreA impacts expression of rRNA and transcription factors, affecting Mycobacterium smegmatis survival. In: Scientific Reports, 10 (1).

Karambelkar, S and Udupa, S and Gowthami, VN and Ramachandra, SG and Swapna, G and Nagaraja, V (2020) Emergence of a novel immune-evasion strategy from an ancestral protein fold in bacteriophage mu. In: Nucleic Acids Research, 48 (10). pp. 5294-5305.

Rani, P and Kalladi, SM and Bansia, H and Rao, S and Jha, RK and Jain, P and Bhaduri, T and Nagaraja, V (2020) A Type IA DNA/RNA Topoisomerase with RNA Hydrolysis Activity Participates in Ribosomal RNA Processing. In: Journal of Molecular Biology .

Vasu, K and Rao, DN and Nagaraja, V (2019) Restriction-modification systems. [Book Chapter]

Nandi, Dipankar and Nath, Utpal and Nagaraja, V (2012) Parag P. Sadhale (1960-2012). In: CURRENT SCIENCE, 102 (6). pp. 929-930.

Anandhakumar, S and Debapriya, M and Nagaraja, V and Raichur, Ashok M (2011) Polyelectrolyte microcapsules for sustained delivery of water-soluble drugs. In: Materials Science and Engineering: C, 31 (2). pp. 342-349.

Anandhakumar, S and Nagaraja, V and Raichur, Ashok M (2010) Reversible polyelectrolyte capsules as carriers for protein delivery. In: Colloids and Surfaces B: Biointerfaces, 78 (2). pp. 266-274.

Mitra, A and Angamuthu, K and Nagaraja, V (2008) Genome-wide analysis of the intrinsic terminators of transcription across the genus Mycobacterium. In: Tuberculosis, 88 (6). pp. 566-575.

Nagaraja, V (2008) Irreversible genetic switch to transactivate mom gene during lytic cycle of bacteriophage Mu. In: Indian Journal Of Virology, 19 (1). p. 55.

Kamal, A and Ahmed, SK and Reddy, KS and Khan, MNA and Shetty, RVCRNC and Siddhardha, B and Murty, USN and China, A and Nagaraja, V (2007) Synthesis and Biological Evaluation of a New Series of Benzothiazole-Benzothiadiazine Conjugates as Antibacterial Agents. In: Letters in Drug Design & Discovery, 4 (8). pp. 550-556.

Nagaraja, V (2004) Regulation of DNA topology in mycobacteria. In: Current Science, 86 (1). pp. 135-140.

Jain, P and Nagaraja, V (2002) An orphan gyrB in the Mycobacterium smegmatis genome uncovered by comparative genomics. In: Journal of Genetics, 81 (3). pp. 106-110.

Unniraman, S and Prakash, R and Nagaraja, V (2002) Conserved economics of transcription termination in eubacteria. In: Nucluic Acids Research, 30 (3). pp. 675-684.

Kalate, Rupali N and Kulkarni, BD and Nagaraja, V (2002) Analysis of DNA curvature distribution in mycobacterial promoters using theoretical models. In: Biophysical Chemistry, 99 . pp. 77-97.

Nagaraja, V and Sikder, D and Jain, P (2002) DNA topoisomerase I from mycobacteria - A potential drug target. In: Current Pharmaceutical Design, 8 (22). pp. 1995-2007.

Manjunatha, UH and Mahadevan, S and Visweswariah, Sandhya S and Nagaraja, V (2001) Monoclonal antibodies to mycobacterial DNA gyrase A inhibit DNA supercoiling activity. In: European Journal of Biochemistry, 268 . pp. 2038-2046.

Manjunatha, UH and Somesh, BP and Nagaraja, V and Visweswariah, Sandhya S (2001) A Mycobacterium smegmatis gyrase B specific monoclonal antibody reveals association of gyrase A and B subunits in the cell. In: FEMS Microbiogy Letters, 194 . pp. 87-92.

Basak, Shashwati and Nagaraja, V (2001) A versatile in vivo footprinting technique using 1,10-phenanthroline-copper complex to study important cellular processes. In: Nucleic Acids Research, 29 (21). e105-1-e105-6.

Manjunatha, UH and Madhusudan, K and Visweswariah, Sandhya S and Nagaraja, V (2000) Structural heterogeneity in DNA gyrases from Gram-positive and Gram-negative bacteria. In: Current Science, 79 (7). pp. 968-974.

Bhaduri, T and Sikder, D and Nagaraja, V (1998) Sequence specific interaction of Mycobacterium smegmatis topoisomerase I with duplex DNA. In: Nucleic Acids Research, 26 (07). pp. 1668-1674.

De, Amitabha and Ramesh, V and Mahadevan, S and Nagaraja, V (1998) Mg2+ Mediated Sequence-Specific Binding of Transcriptional Activator Protein C of Bacteriophage Mu to DNA. In: Biochemistry, 37 (11). pp. 3831-3838.

De, Amitabha and Paul, BD and Nagaraja, V (1997) Use of protein A gene fusions for the analysis of structure–function relationship of the transactivator protein C of bacteriophage Mu. In: Protein Engineering, 10 (8). pp. 935-941.

Madhusudan, K and Nagaraja, V (1996) Alignment and phylogenetic analysis of type II DNA topoisomerases. In: Journal of Biosciences, 21 (5). pp. 613-629.

Ramesh, V and Nagaraja, V (1996) Sequence-specific DNA Binding of the Phage Mu C Protein:Footprinting Analysis Reveals Altered DNA Conformation Upon Protein Binding. In: Journal of Molecular Biology, 22 . pp. 22-33.

Nair, Murlidharan T and Madhusudan, K and Nagaraja, V and Kulkarni, BD and Majumdar, HK and Singh, Rajan (1996) Theoretical permutation gel electrophoretic analysis of a curved DNA fragment located in circular permutation. In: Electrophoresis, 17 (4). pp. 633-641.

Nair, Murlidharan T and Kulkarni, BD and Nagaraja, V (1995) Differential binding of RNA polymerase to the wild type Mu mom promoter and its C independent mutant: a theoretical analysis. In: Biophysical Chemistry, 53 (3). pp. 241-245.

Madhusudan, K and Nagaraja, V (1995) Mycobacterium smegmatis DNA gyrase: cloning and overexpression in Escherichia coli. In: Microbiology, 141 . pp. 3029-3037.

Ahmed, Said M and Ramesh, V and Nagaraja, V and Parish, JH and Hadi, SM (1994) Mode of binding of quercetin to DNA. In: Mutagenesis, 1 . pp. 193-197.

Bhaduri, Tisha and Nagaraja, V (1994) DNA topoisomerase I from Mycobacterium smegmatis. In: Indian Journal of Biochemistry & Biophysics, 31 . pp. 339-343.

Ramesh, V and De, Amitabha and Nagaraja, V (1994) Overproduction and Purification of C Protein, the Late Gene Transcription Activator from Phage Mu. In: Protein Expression and Purification, 5 (4). pp. 379-384.

Madhusudan, K and Ramesh, V and Nagaraja, V (1994) Molecular cloning of gyrA and gyrB genes of mycobacterium tuberculosis: analysis of nucleotide sequence. In: Biochemistry and Molecular Biology International, 33 (4). pp. 651-660.

Madhusudan, K and Ramesh, V and Nagaraja, V (1994) Cloning and sequence analysis of DNA gyrase genes from Mycobacterium tuberculosis. In: Current Science, 66 (9). pp. 664-667.

Ramesh, V and De, Amitabha and Nagaraja, V (1994) Engineering hyperexpression of bacteriophage Mu C protein by removal of secondary structure at the translation initiation region. In: Protein Engineering, 7 (8). pp. 1053-1057.

Nair, Murlidharan T and Madhusudan, K and Nagaraja, V and Kulkarni, BD and Majumdar, HK and Singh, Rajan (1994) On the mobility behavior of a curved DNA fragment located in circular permutation. In: FEBS letters, 351 . pp. 321-324.

Nagaraja, V (1993) Control of transcription initiation. In: Journal of Biosciences, 18 (1). pp. 13-25.

Nagaraja, V and Gopinathan, KP (1987) Transcriptional specificity after mycobacteriophage I3 infection. In: Journal of Biosciences, 11 (1-4). pp. 167-179.

Nagaraja, V and Gopinathan, KP (1981) Macromolecular synthesis in mycobacteriophage I3 infected cells. In: Molecular Biology Reports, 8 (1). pp. 11-15.

Nagaraja, V and Gopinathan, KP (1981) Involvement of DNA gyrase in the replication and transcription of mycobacteriophage 13 DNA. In: FEBS Letters, 127 (1). pp. 57-62.

Karnik, SS and Nagaraja, V and Gope, ML and Gopinathan, KP (1981) Chromosome Structure Of Mycobacteriophage-13. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 16.

Nagaraja, V (1981) Transcriptional specificity after mycobacteriophage-13 infection. In: Indian Journal of Biochemistry & Biophysics, 18 (4). p. 190.

Nagaraja, V and Karnik, S and Gopinathan, KP (1980) Nature of CA2+ Involvement in phage DNA injection. In: Indian Journal of Biochemistry & Biophysics, 17 (4). S65 -S65.

Nagaraja, V and Gopinathan, KP (1979) Transcriptional control following phage-13. In: Indian Journal of Biochemistry & Biophysics, 16 (1). pp. 22-23.

De, Amitabha and Paul, BD and Ramesh, V and Nagaraja, V (1977) Use of protein A gene fusions for the analysis of structure-function relationship of the transactivator protein C of bacteriophage Mu. In: Protein Engineering, 10 (8). pp. 935-941.

This list was generated on Fri Mar 29 14:28:56 2024 IST.