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Tripathi, S and Xing, J and Levine, H and Jolly, MK (2020) Mathematical modeling of plasticity and heterogeneity in EMT. [Book Chapter]
Jia, D and Jolly, MK and Levine, H and Onuchic, JN (2020) Epithelial-mesenchymal transition in cancer. [Book Chapter]
Levine, H and Jolly, MK and Kulkarni, P and Nanjundiah, V (2020) Phenotypic Switching: Implications in Biology and Medicine. [Book Chapter]
Tripathi, S and Levine, H and Jolly, MK (2020) The Physics of Cellular Decision Making during Epithelial-Mesenchymal Transition. [Book Chapter]
Yang, Y and Jolly, MK and Levine, H (2019) Computational Modeling of Collective Cell Migration: Mechanical and Biochemical Aspects. [Book Chapter]
Catalanotto, M and Vaz, JM and Abshire, C and Youngblood, R and Chu, M and Levine, H and Jolly, MK and Dragoi, A-M (2024) Dual role of CASP8AP2/FLASH in regulating epithelial-to-mesenchymal transition plasticity (EMP). In: Translational Oncology, 39 .
Jia, W and Duddu, AS and Jolly, MK and Levine, H (2022) Lack of Correlation between Landscape Geometry and Transition Rates. In: Journal of Physical Chemistry B, 126 (30). pp. 5613-5618.
Masuda, H and Harano, K and Miura, S and Wang, Y and Hirota, Y and Harada, O and Jolly, MK and Matsunaga, Y and Lim, B and Wood, AL and Parinyanitikul, N and Lee, HJ and Gong, G and George, JT and Levine, H and Lee, J and Wang, X and Lucci, A and Rao, A and Schweitzer, BL and Lawrence, OR and Seitz, RS and Morris, SW and Hout, DR and Nakamura, S and Krishnamurthy, S and Ueno, NT (2022) Changes in Triple-Negative Breast Cancer Molecular Subtypes in Patients Without Pathologic Complete Response After Neoadjuvant Systemic Chemotherapy. In: JCO Precision Oncology, 6 .
Vilchez Mercedes, SA and Bocci, F and Ahmed, M and Eder, I and Zhu, N and Levine, H and Onuchic, JN and Jolly, MK and Wong, PK (2022) Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration. In: Frontiers in Molecular Biosciences, 9 .
Muralidharan, S and Sahoo, S and Saha, A and Chandran, S and Majumdar, SS and Mandal, S and Levine, H and Jolly, MK (2022) Quantifying the Patterns of Metabolic Plasticity and Heterogeneity along the Epithelial–Hybrid–Mesenchymal Spectrum in Cancer. In: Biomolecules, 12 (2).
Mandal, S and Tejaswi, T and Janivara, R and Srikrishnan, S and Thakur, P and Sahoo, S and Chakraborty, P and Sohal, SS and Levine, H and George, JT and Jolly, MK (2022) Transcriptomic-based quantification of the epithelial-hybrid-mesenchymal spectrum across biological contexts. In: Biomolecules, 12 (1).
Nam, A and Mohanty, A and Bhattacharya, S and Kotnala, S and Achuthan, S and Hari, K and Srivastava, S and Guo, L and Nathan, A and Chatterjee, R and Jain, M and Nasser, MW and Batra, SK and Rangarajan, G and Massarelli, E and Levine, H and Jolly, MK and Kulkarni, P and Salgia, R (2022) Dynamic phenotypic switching and group behavior help non-small cell lung cancer cells evade chemotherapy. In: Biomolecules, 12 (1).
Jia, W and Jolly, MK and Levine, H (2022) NRF2-dependent Epigenetic Regulation can Promote the Hybrid Epithelial/Mesenchymal Phenotype. In: Frontiers in Cell and Developmental Biology, 9 .
Sahoo, S and Nayak, SP and Hari, K and Purkait, P and Mandal, S and Kishore, A and Levine, H and Jolly, MK (2021) Immunosuppressive Traits of the Hybrid Epithelial/Mesenchymal Phenotype. In: Frontiers in Immunology, 12 .
Vilchez Mercedes, SA and Bocci, F and Levine, H and Onuchic, JN and Jolly, MK and Wong, PK (2021) Decoding leader cells in collective cancer invasion. In: Nature Reviews Cancer .
Jia, D and Park, JH and Kaur, H and Jung, KH and Yang, S and Tripathi, S and Galbraith, M and Deng, Y and Jolly, MK and Kaipparettu, BA and Onuchic, JN and Levine, H (2021) Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer. In: British Journal of Cancer .
Deshmukh, AP and Vasaikar, SV and Tomczak, K and Tripathi, S and Den Hollander, P and Arslan, E and Chakraborty, P and Soundararajan, R and Jolly, MK and Rai, K and Levine, H and Mani, SA (2021) Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing. In: Proceedings of the National Academy of Sciences of the United States of America, 118 (19).
Deng, Y and Chakraborty, P and Jolly, MK and Levine, H (2021) A theoretical approach to coupling the epithelial-mesenchymal transition (Emt) to extracellular matrix (ecm) stiffness via loxl2. In: Cancers, 13 (7).
Chakraborty, P and George, JT and Woodward, WA and Levine, H and Jolly, MK (2021) Gene expression profiles of inflammatory breast cancer reveal high heterogeneity across the epithelial-hybrid-mesenchymal spectrum. In: Translational Oncology, 14 (4).
Nihan Kilinc, A and Sugiyama, N and Reddy Kalathur, RK and Antoniadis, H and Birogul, H and Ishay-Ronen, D and George, JT and Levine, H and Kumar Jolly, M and Christofori, G (2020) Histone deacetylases, Mbd3/NuRD, and Tet2 hydroxylase are crucial regulators of epithelial–mesenchymal plasticity and tumor metastasis. In: Oncogene, 39 (7). pp. 1498-1513.
Thankamony, AP and Murali, R and Karthikeyan, N and Varghese, BA and Teo, WS and McFarland, A and Roden, DL and Holliday, H and Konrad, CV and Cazet, A and Dodson, E and Yang, J and Baker, LA and George, JT and Levine, H and Jolly, MK and Swarbrick, A and Nair, R (2020) Targeting the id1-kif11 axis in triple-negative breast cancer using combination therapy. In: Biomolecules, 10 (9). pp. 1-15.
Chakraborty, P and George, JT and Tripathi, S and Levine, H and Jolly, MK (2020) Comparative Study of Transcriptomics-Based Scoring Metrics for the Epithelial-Hybrid-Mesenchymal Spectrum. In: Frontiers in Bioengineering and Biotechnology, 8 .
Tripathi, S and Chakraborty, P and Levine, H and Jolly, MK (2020) A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells. In: PLoS Computational Biology, 16 (2).
Lourenco, AR and Ban, Y and Crowley, MJ and Lee, SB and Ramchandani, D and Du, W and Elemento, O and George, JT and Jolly, MK and Levine, H and Sheng, J and Wong, ST and Altorki, NK and Gao, D (2020) Differential contributions of pre- And post-EMT tumor cells in breast cancer metastasis. In: Cancer Research, 80 (2). pp. 163-169.
Lourenco, AR and Ban, Y and Crowley, MJ and Lee, SB and Ramchandani, D and Du, W and Elemento, O and George, JT and Jolly, MK and Levine, H and Sheng, J and Wong, ST and Altorki, NK and Gao, D (2020) Differential contributions of pre- And post-EMT tumor cells in breast cancer metastasis. In: Cancer Research, 80 (2). pp. 163-169.
Sarkar, S and Sinha, SK and Levine, H and Jolly, MK and Dutta, PS (2019) Anticipating critical transitions in epithelial-hybrid-mesenchymal cell-fate determination. In: Proceedings of the National Academy of Sciences of the United States of America, 116 (52). pp. 26343-26352.
Jolly, MK and Ware, KE and Xu, S and Gilja, S and Shetler, S and Yang, Y and Wang, X and Austin, RG and Runyambo, D and Hish, AJ and DeWitt, SB and George, JT and Kreulen, RT and Boss, M-K and Lazarides, AL and Kerr, DL and Gerber, DG and Sivaraj, D and Armstrong, AJ and Dewhirst, MW and Eward, WC and Levine, H and Somarelli, JA (2019) E-cadherin represses anchorage-independent growth in sarcomas through both signaling and mechanical mechanisms. In: Molecular Cancer Research, 17 (6). pp. 1391-1402.
Lin, X and Kulkarni, P and Bocci, F and Schafer, NP and Roy, S and Tsai, MY and He, Y and Chen, Y and Rajagopalan, K and Mooney, SM and Zeng, Y and Weninger, K and Grishaev, A and Onuchic, JN and Levine, H and Wolynes, PG and Salgia, R and Rangarajan, G and Uversky, V and Orban, J and Jolly, MK (2019) Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. In: Biomolecules, 9 (2).
Adler, FR and Anderson, ARA and Bhushan, A and Bogdan, P and Bravo-Cordero, JJ and Brock, A and Chen, Y and Cukierman, E and DelGiorno, KE and Denis, GV and Ferrall-Fairbanks, MC and Gartner, ZJ and Germain, RN and Gordon, DM and Hunter, G and Jolly, MK and Karacosta, LG and Mythreye, K and Katira, P and Kulkarni, RP and Kutys, ML and Lander, AD and Laughney, AM and Levine, H and Lou, E and Lowenstein, PR and Masters, KS and Pe'er, D and Peyton, SR and Platt, MO and Purvis, JE and Quon, G and Richer, JK and Riddle, NC and Rodriguez, A and Snyder, JC and Lee Szeto, G and Tomlin, CJ and Yanai, I and Zervantonakis, IK and Dueck, H (2023) Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. In: Cell Systems, 14 (4). pp. 252-257.
Tripathi, SC and Jolly, MK and Mani, SA and Levine, H (2021) Editorial: Characterizing the Multi-Faceted Dynamics of Tumor Cell Plasticity. In: Frontiers in Molecular Biosciences, 7 .
