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Joshi, Anuja and Shukla, Jinal K and Jaiswal, Ravi K and Goutam, Kapil and Gopal, B (2013) CONFORMATIONAL FEATURES OF SIGMA FACTOR/ANTI-SIGMA COMPLEXES. In: Conference on Biomolecular Forms and Functions - A Celebration of 50 Years of the Ramachandran Map, JAN, 2013, Indian Inst Sci, Bangalore, INDIA, pp. 385-397.
Kesharwani, S and Raj, P and Paul, A and Roy, K and Bhanot, A and Mehta, A and Gopal, A and Varshney, U and Gopal, B and Sundriyal, S (2023) Crystal structures of non-uracil ring fragments in complex with Mycobacterium tuberculosis uracil DNA glycosylase (MtUng) as a starting point for novel inhibitor design: A case study with the barbituric acid fragment. In: European Journal of Medicinal Chemistry, 258 .
Singha, B and Behera, D and Khan, MZ and Singh, NK and Sowpati, DT and Gopal, B and Nandicoori, VK (2023) The unique N-terminal region of Mycobacterium tuberculosis sigma factor A plays a dominant role in the essential function of this protein. In: Journal of Biological Chemistry, 299 (3).
Tandi, M and Tripathi, N and Gaur, A and Gopal, B and Sundriyal, S (2022) Curation and cheminformatics analysis of a Ugi-reaction derived library (URDL) of synthetically tractable small molecules for virtual screening application. In: Molecular Diversity .
Raj, P and Selvam, K and Roy, K and Mani Tripathi, S and Kesharwani, S and Gopal, B and Varshney, U and Sundriyal, S (2022) Identification of a new and diverse set of Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) inhibitors using structure-based virtual screening: Experimental validation and molecular dynamics studies. In: Bioorganic and Medicinal Chemistry Letters, 76 .
Gupta, AK and Singh, K and Patidar, Y and Sharma, R and Sardesai, AA and Reddy, G and Gopal, B (2022) Allosteric Determinants in High Temperature Requirement A Enzymes Are Conserved and Regulate the Population of Active Conformations. In: ACS Chemical Biology .
Kumar, S and Khan, MZ and Khandelwal, N and Chongtham, C and Singha, B and Dabla, A and Behera, D and Singh, A and Gopal, B and Arimbasseri, GA and Kamat, SS and Nandicoori, VK (2022) Mycobacterium tuberculosis Transcription Factor EmbR Regulates the Expression of Key Virulence Factors That Aid in Ex Vivo and in Vivo Survival. In: mBio, 13 (3).
Raja, S and Paul, A and Raghavan, S and Narayanan, S and Shee, S and Singh, A and Varshney, U and Gopal, B and Vijayan, M (2022) Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition. In: Current Science, 122 (3). pp. 281-289.
Sharma, P and Vijaykumar, A and Raghavan, JV and Rananaware, SR and Alakesh, A and Bodele, J and Rehman, JU and Shukla, S and Wagde, V and Nadig, S and Chakrabarti, S and Visweswariah, SS and Nandi, D and Gopal, B and Jhunjhunwala, S (2022) Particle uptake driven phagocytosis in macrophages and neutrophils enhances bacterial clearance. In: Journal of Controlled Release, 343 . pp. 131-141.
Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe�4S cluster and regulates Fe�S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .
Anand, K and Tripathi, A and Shukla, K and Malhotra, N and Jamithireddy, AK and Jha, RK and Chaudhury, SN and Rajmani, RS and Ramesh, A and Nagaraja, V and Gopal, B and Nagaraju, G and Narain Seshayee, AS and Singh, A (2021) Mycobacterium tuberculosis SufR responds to nitric oxide via its 4Fe–4S cluster and regulates Fe–S cluster biogenesis for persistence in mice. In: Redox Biology, 46 .
Mehta, A and Raj, P and Sundriyal, S and Gopal, B and Varshney, U (2021) Use of a molecular beacon based fluorescent method for assaying uracil DNA glycosylase (Ung) activity and inhibitor screening. In: Biochemistry and Biophysics Reports, 26 .
Thakur, M and Mohan, D and Singh, AK and Agarwal, A and Gopal, B and Muniyappa, K (2021) Novel insights into ATP-Stimulated Cleavage of branched DNA and RNA Substrates through Structure-Guided Studies of the Holliday Junction Resolvase RuvX. In: Journal of Molecular Biology, 433 (13).
Nadig, S and Murthy, S and Vandanashree, M and Subramanya, HS and Gopal, B and Vembarc, S (2021) Draft genome sequence of the community-associated staphylococcus aureus sequence type 88 strain LVP-7, isolated from an ocular infection. In: Microbiology Resource Announcements, 10 (7).
Raj, R and Nadig, S and Patel, T and Gopal, B (2020) Structural and biochemical characteristics of two Staphylococcus epidermidis RNase J paralogs RNase J1 and RNase J2. In: Journal of Biological Chemistry, 295 (49). pp. 16863-16876.
Jamithireddy, AK and Runthala, A and Gopal, B (2020) Evaluation of specificity determinants in Mycobacterium tuberculosis �/anti-� factor interactions. In: Biochemical and Biophysical Research Communications, 521 (4). pp. 900-906.
Deshmukh, A and Gopal, B (2020) Structural insights into the catalytic mechanism of Bacillus subtilis BacF. In: Acta Crystallographica Section F: Structural Biology Communications, 76 . pp. 145-151.
Samuel, AG and Nagarajan, K and Cidhuraj, K and Gopal, B and Chakravarty, S and Selvaraj, V and Lourdusamy, E and Bhagavathsingh, J (2020) Copper(II) complex intercalated graphene oxide nanocomposites as versatile, reusable catalysts for click reaction. In: Applied Organometallic Chemistry .
Joshi, AC and Kaur, P and Nair, RK and Lele, DS and Nandicoori, VK and Gopal, B (2019) Selectivity among Anti-� Factors by Mycobacterium tuberculosis ClpX Influences Intracellular Levels of Extracytoplasmic Function � Factors. In: Journal of bacteriology, 201 (6).
Jamithireddy, Anil K and Samajdar, Rudra N and Gopal, B and Bhattacharyya, Aninda J (2017) Determination of Redox Sensitivity in Structurally Similar Biological Redox Sensors. In: JOURNAL OF PHYSICAL CHEMISTRY B, 121 (29). pp. 7005-7015.
Shukla, Jinal and Gupta, Radhika and Thakur, Krishan Gopal and Gokhale, Rajesh and Gopal, B (2014) Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA sigma-anti-sigma complex. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 70 (4). pp. 1026-1036.
Mandal, Soumit S and Navratna, Vikas and Sharma, Pratyush and Gopal, B and Bhattacharyya, Aninda J (2014) Titania nanotube-modified screen printed carbon electrodes enhance the sensitivity in the electrochemical detection of proteins. In: BIOELECTROCHEMISTRY, 98 . pp. 46-52.
Rajavel, Malligarjunan and Perinbam, Kumar and Gopal, B (2013) Structural insights into the role of Bacillus subtilis YwfH (BacG) in tetrahydrotyrosine synthesis. In: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 69 (3). pp. 324-332.
Girish, Tavarekere S and Vivek, B and Colaco, Melwin and Misquith, Sandra and Gopal, B (2013) Structure of an amidohydrolase, SACOL0085, from methicillin-resistant Staphylococcus aureus COL. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (Part 2). pp. 103-108.
Girish, Tavarekere S and Vivek, B and Colaco, Melwin and Misquith, Sandra and Gopal, B (2013) Structure of an amidohydrolase, SACOL0085, from methicillin-resistant Staphylococcus aureus COL. In: ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 69 (2). pp. 103-108.
Madan, Lalima L and Goutam, Kapil and Gopal, B (2012) Inter-domain interactions influence the stability and catalytic activity of the bi-domain protein tyrosine phosphatase PTP99A. In: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1824 (8). pp. 983-990.
Madan, Lalima L and Gopal, B (2011) Conformational Basis for Substrate Recruitment in Protein Tyrosine Phosphatase 10D. In: Biochemistry, 50 (46). pp. 10114-10125.
Srivastava, Sandeep Kumar and Rajasree, Kalagiri and Gopal, B (2011) Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. In: Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1814 (10). pp. 1349-1357.
Madan, Lalima L and Veeranna, S and Shameer, Khader and Reddy, Chilamakuri CS and Sowdhamini, R and Gopal, B (2011) Modulation of Catalytic Activity in Multi-Domain Protein Tyrosine Phosphatases. In: PLos One, 6 (9).
Girish, Tavarekere S and Navratna, Vikas and Gopal, B (2011) Structure and nucleotide specificity of Staphylococcus aureus dihydrodipicolinate reductase (DapB). In: FEBS Letters, 585 (16). pp. 2561-2567.
Thakur, Krishan Gopal and Jaiswal, Ravi Kumar and Shukla, Jinal K and Praveena, T and Gopal, B (2010) Over-expression and purification strategies for recombinant multi-protein oligomers: A case study of Mycobacterium tuberculosis sigma/anti-sigma factor protein complexes. In: Protein Expression and Purification, 74 (2). pp. 223-230.
Jaiswal, Ravi Kumar and Manjeera, G and Gopal, B (2010) Role of a PAS sensor domain in the Mycobacterium tuberculosis transcription regulator Rv1364c. In: Biochemical and Biophysical Research Communications, 398 (3). pp. 342-349.
Rajavel, M and Gopal, B (2010) Analysis of multiple crystal forms of Bacillus subtilis BacB suggests a role for a metal ion as a nucleant for crystallization. In: Acta Crystallographica Section D, 66 (Part 5). pp. 635-839.
Thakur, Krishan Gopal and Praveena, T and Gopal, B (2010) Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslA. In: Journal of Molecular Biology, 397 (5). pp. 1199-1208.
Kapoor, S and Girish, TS and Mandal, SS and Gopal, B and Bhattacharyya, AJ (2010) Inhibition of a Protein Tyrosine Phosphatase Using Mesoporous Oxides. In: Journal of Physical Chemistry B, 114 (9). pp. 3117-3121.
Thakur, Krishan Gopal and Praveena, T and Gopal, B (2010) Mycobacterium tuberculosis Rv2704 is a member of the YjgF/YER057c/UK114 family. In: Proteins: Structure, Function, and Bioinformatics, 78 (3). pp. 773-778.
Chakrabarti, Kalyan Sundar and Thakur, Krishan Gopal and Gopal, B and Sarma, Siddhartha P (2010) X-ray crystallographic and NMR studies of pantothenate synthetase provide insights into the mechanism of homotropic inhibition by pantoate. In: FEBS Journal, 277 (3). pp. 697-712.
Navratna, V and Nadig, S and Sood, V and Prasad, K and Arakere, G and Gopal, B (2010) Molecular Basis for the Role of Staphylococcus aureus Penicillin Binding Protein 4 in Antimicrobial Resistance. In: Journal of Bacteriology, 192 (1). pp. 134-144.
Raghava, Smita and Barua, Bipasha and Singh, Pradeep K and Das, Mili and Madan, Lalima and Bhattacharyya, Sanchari and Bajaj, Kanika and Gopal, B and Varadarajan, Raghavan and Gupta, Munishwar N (2008) Refolding and simultaneous purification by three-phase partitioning of recombinant proteins from inclusion bodies. In: Protein Science, 17 (11). pp. 1987-1997.
Girish, Tavarekere S and Sharma, Eshita and Gopal, B (2008) Structural and functional characterization of Staphylococcus aureus dihydrodipicolinate synthase. In: FEBS Letters, 582 (19). pp. 2923-2930.
Gopal, B and Rajavel, M and Kulkarni, Neema N (2008) Conformational Studies Suggest That the Double Stranded \beta Helix Scaffold Provides an Optimal Balance Between Protein Stability and Function. In: Protein and Peptide Letters, 15 (3). pp. 244-249.
Madan, Lalima L and Gopal, B (2008) Addition of a polypeptide stretch at the N-terminus improves the expression, stability and solubility of recombinant protein tyrosine phosphatases from Drosophila melanogaster. In: Protein Expression and Purification, 57 (2). pp. 234-243.
Madan, Lalima L and Gopal, B (2008) Addition of a polypeptide stretch at the N-terminus improves the expression, stability and solubility of recombinant protein tyrosine phosphatases from Drosophila melanogaster. In: Protein Expression and Purification, 57 (2). pp. 234-243.
Thakur, Krishan Gopal and Joshi, Anagha Madhusudan and Gopal, B (2006) Structural and Biophysical Studies on Two Promoter Recognition Domains of the Extra-cytoplasmic Function \sigma Factor $\sigma ^C$ from Mycobacterium tuberculosis. In: Journal of Biological Chemistry, 282 (7). pp. 4711-4718.
Rajavel, M and Gopal, B (2006) Crystallization and preliminary X-ray diffraction studies on the bicupin YwfC from Bacillus subtilis. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 62 (12). pp. 1259-1262.
Rajavel, M and Warrier, Thulasi and Gopal, B (2006) Old Fold in a New X-Ray Diffraction Dataset? Low-Resolution Molecular Replacement Using Representative Structural Templates Can Provide Phase Information. In: Proteins: Structure, Function, and Bioinformatics, 64 (4). pp. 923-930.
Thakur, Krishan G and Gopal, B (2005) Crystallization and preliminary X-ray diffraction studies of two domains of a bilobed extra-cytoplasmic function sigma factor SigC from Mycobacterium tuberculosis. In: Acta Crystallographica Section F, 61 (Part 8). pp. 779-781.
Girish, TS and Gopal, B (2005) Crystallization and preliminary X-ray diffraction studies on the catalytic domain of the chick retinal neurite-inhibitory factor CRYP-2. In: Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61 (4). pp. 381-383.
Gopal, B and Madan, Lalima L and Betz, Stephen F and Kossiakoff, Anthony A (2005) The Crystal Structure of a Quercetin 2,3-Dioxygenase from Bacillus subtilis Suggests Modulation of Enzyme Activity by a Change in the Metal Ion at the Active Site(s). In: Biochemistry, 44 (1). pp. 193-201.
Moorthy, Anu K and Singh, SK and Gopal, B and Surolia, A and Murthy, MRN (2001) Variability of Calcium Binding to EF-hand Motifs Probed by Electrospray Ionization Mass Spectrometry. In: Journal of the American Society for Mass Spectrometry, 12 (12). pp. 1296-1301.
Moorthy, AK and Gopal, B and Satish, PR and Bhattacharya, S and Bhattacharya, A and Murthy, MRN and Surolia, A (1999) Thermodynamics of target peptide recognition by calmodulin and a calmodulin analogue: implications for the role of the central linker. In: FEBS-Letters, 461 (1-2). pp. 19-24.
Moorthy, Anu K and Gopal, B and Mohan, Gopi C and Murthy, MRN (1999) Temperature-dependent cell transformation in a calcium-binding protein from Entamoeba histolytica. In: Current Science, 77 (7). pp. 855-856.
Velanker, SS and Gokhale, RS and Ray, Soumya S and Gopal, B and Parthasarathy, S and Santi, DV and Balaram, P and Murthy, MRN (1999) Disulfide engineering at the dimer interface of Lactobacillus casei thymidylate synthase: crystal structure of the T155C/E188C/C244T mutant. In: Protein Science, 8 (4). pp. 930-933.
Prasanna, V and Gopal, B and Murthy, MRN and Santi , DV and Balaram, Padmanabhan (1999) Effect of amino acid substitutions at the subunit interface on the stabiity and aggregation properties of a dimeric protein: role of Arg 178 and Arg 218 at the dimer interface of thymidylate synthase. In: Proteins: Structure, Function, and Bioinformatics, 34 (3). pp. 356-368.
Gopal, B and Ray, Soumya S and Gokhale, RS and Balaram, H and Murthy, MRN and Balaram, P (1999) Cavity-Creating Mutation at the Dimer Interface of Plasmodium falciparum Triosephosphate Isomerase: Restoration of Stability by Disulfide Cross-Linking of Subunits. In: Biochemistry, 38 (1). pp. 478-486.
Gopal, B and Krishna Rao, JV and Thomas, CJ and Bhattacharya, A and Bhattacharya, S and Murthy, MRN and Surolia, A (1998) Induction of a spectroscopically defined transition by guanidinium hydrochloride on a recombinant calcium binding protein from Entamoeba histolytica. In: FEBS Letters, 441 (01). pp. 71-76.
Gopal, B and Suma, R and Murthy, MRN and Bhattacharya, A and Bhattacharya, S (1998) Crystallization and preliminary X-ray studies of a recombinant calcium-binding protein from Entamoeba histolytica. In: Acta Crystallographic Section D, 54 (Part 6). pp. 1442-1445.
Gopal, B and Prasanna, V and Parthasarathy, S and Santi, DV and Balaram, P and Murthy, MRN (1998) Crystals of a thymidylate synthase mutant offer insights into crystal packing and plasticity of protein-protein contacts. In: Current Science, 75 (3). pp. 299-304.
Gopal, B and Swaminathan, CP and Bhattacharya, Sudha and Bhattacharya, Alok and Murthy, MRN and Surolia, A (1997) Thermodynamics of metal ion binding and denaturation of a calcium binding protein from Entamoeba histolytica. In: Biochemistry, 36 (36). pp. 10910-10916.
Gopal, B and Manohar, S (1994) VLSI architecture for the Winograd Fourier Transform algorithm. In: Microprocessing & Microprogramming, 40 (9). pp. 605-616.
