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Balaji, S and Srinivasan, N (2007) Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution. In: Journal of Biosciences, 32 (1). pp. 83-96.
Abhilash, V and Balu, R and Balaji, S and Nathan, Senthil S and Mohan, S (2004) Monte Carlo simulation of transport process of the sputtered species in the facing target sputtering technique. In: Computational Materials Science, 30 (3-4). pp. 523-529.
Pandit, SB and Balaji, S and Srinivasan, N (2004) Structural and Functional Characterization of Gene Products Encoded in the Human Genome by Homology Detection. In: IUBMB Life (International Union of Biochemistry and Molecular Biology: Life), 56 (6). pp. 317-331.
Balaji, S and Satyam, PV and Lakshminarayanan, V and Mohan, S (2004) Influence of secondary ion bombardment on the composition, structure and surface properties of platinum thin films. In: Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 217 (3). pp. 423-428.
Pandit, Shashi B and Bhadra, Rana and Gowri, VS and Balaji, S and Anand, B and Srinivasan, N (2004) SUPFAM: A database of sequence superfamilies of protein domains. In: BMC Bioinformatics, 5 . pp. 1-5.
Balaji, S and Mohan, S and Muthu, DVS and Sood, AK (2003) Ultra thin films of nanocrystalline Ge studied by AFM and interference enhanced Raman scattering. In: Journal of Chemical Sciences, 115 (5-6). pp. 401-410.
Sopory, Shailaja and Balaji, S and Srinivasan, N and Visweswariah, Sandhya S (2003) Modeling and mutational analysis of the GAF domain of the cGMP-binding, cGMP-specific phosphodiesterase, PDE5. In: FEBS Letters, 539 (1-3). pp. 161-166.
Gowri, V S and Pandit, Shashi B and Karthik, P S and Srinivasan, N and Balaji, S (2003) Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. In: Nucleic Acids Research, 31 (1). pp. 486-488.
Balaji, S and Aruna, S and Srinivasan, N (2003) Tolerance to the Substitution of Buried Apolar Residues by Charged Residues in the Homologous Protein Structures. In: Proteins: Structure, Function, and Genetics, 53 (4). pp. 783-791.
Rao, G Venugopal and Amarendra, G and Viswanathan, B and Kanakaraju, S and Balaji, S and Mohan, S and Sood, AK (2002) Studies on $Ge/CeO{_2}$ thin film system using positron beam and Raman spectroscopy. In: Thin Solid Films, 406 (1-2). pp. 250-254.
Sujatha, S and Balaji, S and Srinivasan, N (2001) PALI: a database of alignments and phylogeny of homologous protein structures. In: Bioinformatics, 17 (4). pp. 375-376.
Balaji, S and Srinivasan, N (2001) Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins. In: Protein Engineering, 14 (4). pp. 219-226.
Balaji, S and Sujatha, S and Chetan Kumar, Sai S and Srinivasan, N (2001) PALI—a database of Phylogeny and ALIgnment of homologous protein structures. In: Nucleic Acids Research, 29 (1). pp. 61-65.
Balaji, S and Meyn, SP (2000) Multiplicative ergodicity and large deviations for an irreducible Markov chain. In: Stochastic Processes and their Applications, 90 (01). pp. 123-144.
Balaji, S and Abinandanan, TA and Ayappa, KG and Chandrasekhar, N (2000) Molecular dynamics study of vacancy diffusion in a forced Lennard-Jones system. In: Philosophical Magazine A, 80 (2). pp. 301-310.
James, AR and Balaji, S and Krupanidhi, SB (1999) Impedance-fatigue correlated studies on SrBi2Ta2O9. In: Materials Science and Engineering, 64 (3). pp. 149-156.
Balaji, S and Patnaik, LM and Jenkins, Lawrence and Goel, PS (1992) S-nets: A Petri net based model for performance evaluation of real-time scheduling algorithms. In: Journal of Parallel and Distributed Computing, 15 (3). pp. 225-237.
Patnaik, LM and Balaji, S (1987) Byzantine-resilient distributed computing systems. In: Sadhana-Academy Proceedings In Engineering Sciences, 11 (1-2). pp. 81-91.
