An algorithm to find similar internal sequence repeats

Banerjee, Nirjhar and Chidambarathanu, N and Sabarinathan, R and Michael, Daliah and Ranjani, C Vasuki and Balakrishnan, N and Sekar, K (2009) An algorithm to find similar internal sequence repeats. In: Current science, 97 (9). pp. 1345-1349.

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Abstract

In recent years, identification of sequence patterns has been given immense importance to understand better their significance with respect to genomic organization and evolutionary processes. To this end, an algorithm has been derived to identify all similar sequence repeats present in a protein sequence. The proposed algorithm is useful to correlate the three-dimensional structure of various similar sequence repeats available in the Protein Data Bank against the same sequence repeats present in other databases like SWISS-PROT, PIR and Genome databases.

Item Type:	Journal Article
Publication:	Current science
Publisher:	Indian Academy of Sciences
Additional Information:	Copyright for this article belongs to Indian Academy of Sciences.
Keywords:	Amino acid substitution; evolutionary divergence; protein sequence;three-dimensional structures
Department/Centre:	Division of Interdisciplinary Sciences > Supercomputer Education & Research Centre
Date Deposited:	01 Dec 2009 06:12
Last Modified:	19 Sep 2010 05:53
URI:	http://eprints.iisc.ac.in/id/eprint/25029

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